genome.fa.s5.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  23  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6023664--6023803	48	2.9	48	80	0	163	23	23	15	37	1.93
6023530--6023755	123	1.8	123	85	1	319	23	19	15	40	1.90
6023558--6023924	171	2.1	171	89	1	574	22	21	17	38	1.93
6023833--6023924	48	1.9	48	93	0	157	21	22	16	39	1.92
6023843--6024009	85	2.0	85	85	4	230	24	23	15	35	1.94
6036519--6036555	16	2.2	18	85	9	51	67	5	8	18	1.36
6036730--6037062	30	11.2	30	80	8	324	38	4	23	33	1.76
6036730--6037062	59	5.6	60	80	7	324	38	4	23	33	1.76
6036730--6037062	89	3.7	90	80	5	322	38	4	23	33	1.76
6036811--6037082	119	2.3	119	78	8	275	38	4	23	34	1.74
6038756--6038789	17	1.9	17	94	5	59	55	0	2	41	1.15
6038746--6038789	6	7.2	6	82	12	54	54	0	2	43	1.12
6044356--6044400	23	2.0	23	86	0	63	31	13	20	35	1.91
6044609--6044730	58	2.1	58	92	0	190	49	20	0	30	1.49
6046751--6046836	26	3.3	26	76	14	88	48	0	1	50	1.08
6046737--6046809	26	2.8	27	81	8	89	45	1	0	53	1.09
6046738--6046836	26	3.8	26	77	9	87	47	1	1	50	1.14
6054132--6054221	17	5.2	17	75	15	87	42	5	2	50	1.38
6054220--6054257	15	2.6	15	91	4	60	52	13	5	28	1.61
6056981--6057075	43	2.2	45	86	5	133	56	9	17	15	1.65
6059164--6059269	50	2.1	51	91	5	171	42	24	21	11	1.86
6059291--6060206	92	10.0	92	91	1	1408	33	16	18	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6060849--6060971	17	7.3	17	76	8	117	41	1	4	52	1.33
6060880--6060927	6	8.3	6	78	17	57	45	2	0	52	1.12
6060970--6061007	15	2.6	15	91	4	60	52	13	5	28	1.61
6062268--6062303	13	2.8	13	91	0	54	63	0	36	0	0.94
6062757--6063112	30	11.9	30	77	6	287	34	18	5	41	1.73
6062760--6063112	60	5.9	61	78	5	328	34	18	5	42	1.72
6062757--6063112	90	4.0	90	81	4	380	34	18	5	41	1.73
6063079--6063261	86	2.1	87	80	10	205	33	27	1	37	1.64
6063126--6063345	58	3.8	58	86	5	295	33	26	1	38	1.65
6063131--6063350	29	7.6	27	69	23	128	33	27	1	37	1.68
6068384--6068420	15	2.5	15	91	4	58	21	10	2	64	1.37
6068529--6068688	58	2.8	56	79	12	173	45	1	1	51	1.20
6068783--6068878	46	2.1	46	98	0	183	35	26	6	32	1.81
6068860--6068897	16	2.4	16	95	0	67	28	31	2	36	1.71
6072272--6072342	28	2.5	28	79	4	72	35	0	1	63	1.03
6075657--6075752	27	3.6	27	84	0	120	27	16	28	28	1.97
6081175--6081425	30	8.3	30	77	9	235	39	1	23	35	1.63
6081316--6081443	60	2.1	59	83	8	152	40	0	21	37	1.54
6083697--6084416	49	14.6	48	75	5	488	16	31	17	34	1.92
6083697--6084416	99	7.3	98	83	2	755	16	31	17	34	1.92
6083697--6084422	198	3.7	196	85	3	877	17	30	17	34	1.93
6092621--6092820	59	3.3	60	74	9	147	37	2	26	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6092621--6092864	30	8.1	30	77	7	174	38	2	25	34	1.69
6092741--6092864	61	2.0	60	81	7	144	42	4	20	33	1.70
6092838--6092897	30	2.0	30	86	0	84	40	10	18	31	1.84
6092754--6092880	60	2.1	61	79	7	134	43	4	17	34	1.70
6093803--6093846	7	6.3	7	79	10	54	65	0	2	31	1.05
6101052--6101094	12	3.3	12	76	17	50	48	2	2	46	1.27
6103949--6104007	24	2.6	22	80	15	66	38	11	10	38	1.76
6104838--6104876	21	1.9	20	84	5	51	35	5	0	58	1.20
6108921--6108948	6	4.7	6	100	0	56	50	0	50	0	1.00
6109722--6109783	18	3.6	18	71	20	69	56	0	12	30	1.37
6110455--6110498	15	2.9	15	75	0	52	70	9	0	20	1.14
6110453--6110522	30	2.3	29	79	15	81	65	7	0	27	1.18
6113812--6113861	26	1.9	26	87	0	73	30	0	12	58	1.34
6113924--6113965	10	4.4	10	76	11	52	61	16	2	19	1.44
6116883--6116950	32	2.1	33	86	2	93	50	2	2	44	1.32
6116883--6116950	33	2.1	32	83	8	84	50	2	2	44	1.32
6117873--6117931	20	3.0	20	80	9	75	52	0	1	45	1.10
6117880--6117931	19	2.6	21	81	9	63	51	0	0	48	1.00
6117882--6117955	32	2.5	31	87	10	109	54	0	0	45	1.00
6119037--6119066	14	2.1	14	93	0	51	70	3	6	20	1.25
6119259--6119331	28	2.6	28	91	2	110	28	6	31	32	1.83
6119287--6119346	28	2.1	28	90	0	93	35	3	30	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6119297--6119561	30	9.1	28	76	12	180	30	2	28	37	1.71
6119338--6119621	30	9.7	28	75	11	187	31	2	28	36	1.72
6119305--6119496	58	3.3	56	75	13	158	29	3	31	35	1.75
6119372--6119622	30	8.6	29	77	12	192	32	2	27	37	1.70
6119476--6119606	58	2.2	60	80	9	144	32	1	29	36	1.67
6120739--6120778	2	20.0	2	100	0	80	50	0	0	50	1.00
6121322--6121359	20	1.9	20	94	0	67	21	2	31	44	1.66
6121390--6121464	6	12.8	6	72	9	57	54	4	1	40	1.27
6121398--6121466	17	4.1	17	84	0	84	56	4	1	37	1.28
6121390--6121464	23	3.2	23	75	17	66	54	4	1	40	1.27
6121728--6121770	6	7.2	6	94	0	77	34	0	65	0	0.93
6121948--6121984	6	6.2	6	93	0	65	35	0	64	0	0.94
6122056--6122088	9	3.3	10	84	16	50	51	0	3	45	1.16
6122478--6122522	22	2.1	20	84	12	54	40	0	0	60	0.97
6136134--6136160	5	5.4	5	100	0	54	0	22	0	77	0.76
6137292--6137341	5	10.0	5	82	0	64	36	4	22	38	1.73
6137292--6137341	15	3.3	15	91	0	73	36	4	22	38	1.73
6138938--6138981	22	2.0	23	81	4	54	36	0	6	56	1.26
6146274--6147430	581	2.0	579	93	1	1978	35	15	12	36	1.86
6155452--6155485	17	2.0	17	94	0	59	38	0	32	29	1.58
6156959--6157031	36	2.0	36	97	0	137	35	20	19	24	1.95
6161129--6161168	21	1.9	21	85	10	55	32	5	0	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6161128--6161174	21	2.2	21	77	7	51	36	4	0	59	1.17
6161198--6161227	14	2.2	14	94	5	53	43	6	6	43	1.57
6163256--6163295	5	7.8	5	91	5	62	0	0	35	65	0.93
6163262--6163295	16	2.1	16	100	0	68	0	0	35	64	0.94
6164477--6164516	10	3.9	10	80	6	53	52	0	0	47	1.00
6164468--6164513	21	2.4	18	78	21	58	47	0	0	52	1.00
6164476--6164521	21	2.2	21	96	0	83	47	0	0	52	1.00
6167630--6167741	57	2.0	57	100	0	224	42	21	12	23	1.86
6171706--6171735	14	2.1	15	93	6	53	56	0	13	30	1.37
6172576--6172611	17	2.1	17	89	0	54	36	2	2	58	1.27
6172683--6172720	14	2.6	15	91	8	69	50	34	0	15	1.45
6174371--6174667	29	10.2	28	78	9	247	35	26	4	33	1.77
6174348--6174680	59	5.7	59	77	5	279	33	27	3	35	1.75
6174332--6174681	30	12.0	29	77	8	239	34	26	4	35	1.75
6174311--6174684	29	12.8	30	75	9	188	35	26	4	34	1.75
6174417--6174676	144	1.8	145	84	4	364	33	26	4	34	1.77
6175857--6175915	3	19.7	3	100	0	118	66	0	0	33	0.92
6176602--6176626	7	3.6	7	100	0	50	32	28	0	40	1.57
6183622--6183662	21	2.0	21	85	0	55	24	12	21	41	1.87
6184741--6184897	80	2.0	78	84	2	206	31	8	17	41	1.81
6186655--6186730	29	2.6	29	87	4	98	48	13	13	25	1.78
6197162--6197187	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6198334--6198378	6	7.5	6	100	0	90	48	0	33	17	1.48
6208155--6208190	19	1.9	19	88	5	56	61	2	2	33	1.25
6215128--6215160	15	2.3	15	89	5	50	63	6	0	30	1.18
6219953--6219992	13	3.0	13	89	10	55	37	0	0	62	0.95
6219951--6219993	10	4.2	10	80	13	52	39	0	0	60	0.97
6219703--6220363	250	2.6	252	84	4	881	37	9	7	45	1.64
6220852--6220917	33	2.0	34	93	3	116	48	15	0	36	1.45
6227788--6227840	22	2.4	22	87	0	70	39	20	28	11	1.87
6242052--6242101	22	2.3	22	85	0	64	42	18	26	14	1.87
6243948--6244039	35	2.6	35	82	0	103	33	8	25	32	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120