genome.fa.s5.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  2  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252374--252442	32	2.2	32	81	5	77	47	14	7	30	1.71
261636--261689	23	2.5	22	75	6	56	50	3	9	37	1.52
264959--265001	23	1.9	23	90	4	70	62	0	0	37	0.95
268277--268323	16	2.9	16	72	15	51	29	0	2	68	1.02
269672--270043	59	6.4	59	87	1	507	34	2	29	33	1.73
271275--271337	2	31.5	2	100	0	126	49	0	0	50	1.00
271958--272014	6	9.8	6	77	7	55	50	5	0	43	1.24
271958--272013	17	3.2	17	82	9	69	50	5	0	44	1.25
271956--272014	23	2.6	23	83	5	66	52	5	0	42	1.23
271983--272033	17	2.8	18	88	5	68	56	5	3	33	1.42
273752--273789	2	19.0	2	100	0	76	50	0	0	50	1.00
274755--274931	88	2.0	88	98	0	345	32	11	21	34	1.90
278687--278719	15	2.2	15	100	0	66	36	12	18	33	1.88
280475--280533	2	29.5	2	100	0	118	50	0	0	49	1.00
282694--283006	59	5.3	59	88	3	434	35	4	27	32	1.78
282689--283006	119	2.7	117	89	2	458	34	5	28	31	1.79
282823--282974	30	5.1	30	68	22	106	34	3	26	34	1.75
284834--284879	21	2.2	21	84	7	58	19	4	13	63	1.46
284865--284986	6	21.0	6	71	12	85	50	1	2	45	1.24
284901--284986	41	2.1	41	91	0	136	54	0	3	41	1.17
284871--284951	17	4.7	17	85	7	101	51	2	1	44	1.22
284942--284986	17	2.6	18	85	3	65	53	0	4	42	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284918--285010	24	3.7	24	76	17	73	52	1	3	43	1.24
287200--287241	17	2.4	18	80	8	50	35	0	2	61	1.09
309843--309881	17	2.2	17	86	9	51	61	2	0	35	1.10
311079--311109	15	2.1	15	93	0	53	70	3	0	25	1.02
311615--311656	19	2.2	20	91	8	70	64	16	11	7	1.48
311624--311661	19	2.1	18	85	9	51	68	18	10	2	1.30
331506--331531	11	2.4	11	100	0	52	50	0	19	30	1.48
334562--334594	12	2.7	13	90	9	52	51	0	48	0	1.00
334554--334603	21	2.6	20	82	14	61	54	0	46	0	1.00
338866--338921	27	2.1	27	86	6	78	42	5	7	44	1.54
344629--344716	23	3.8	23	78	4	88	39	19	12	28	1.88
348999--349024	2	13.0	2	100	0	52	50	0	0	50	1.00
354619--354678	13	4.5	13	72	12	50	51	0	1	46	1.10
354936--354973	20	1.9	20	89	10	60	34	2	7	55	1.43
361937--362032	50	1.9	50	80	4	113	36	10	23	29	1.88
362086--362277	34	5.6	34	79	2	206	43	13	11	31	1.80
362086--362285	68	2.9	68	82	0	247	44	13	12	31	1.79
368504--368854	154	2.3	156	87	5	518	24	21	17	37	1.94
368889--369219	40	8.4	40	76	8	230	28	13	23	35	1.92
368947--369134	79	2.4	79	75	8	184	29	13	21	36	1.91
369273--369379	50	2.1	50	84	0	142	21	23	17	37	1.94
369399--369532	39	3.4	39	83	4	117	28	15	26	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369400--369614	40	5.4	40	79	9	151	26	15	25	32	1.95
369898--370015	49	2.4	49	85	0	155	19	32	16	31	1.94
370981--371029	22	2.2	22	78	7	55	2	18	0	79	0.83
376501--376685	91	2.0	91	94	0	325	22	16	21	39	1.92
379246--379284	19	2.1	19	90	0	60	10	10	15	64	1.50
383348--383436	29	3.1	29	83	6	126	23	20	16	39	1.92
384504--384607	31	3.4	29	68	12	75	50	4	1	42	1.34
384890--384919	12	2.5	12	88	0	51	36	0	0	63	0.95
388402--388439	17	2.2	17	86	9	51	47	7	2	42	1.46
392549--392722	92	1.9	92	82	0	222	40	13	12	34	1.81
392550--392742	92	2.1	92	77	0	199	43	13	10	32	1.78
395075--395146	22	3.3	22	67	7	65	31	12	18	37	1.88
395060--395233	44	4.0	44	81	8	210	33	9	16	40	1.80
400121--400165	24	1.9	24	86	4	65	33	0	0	66	0.92
408526--408561	16	2.2	16	90	0	54	38	0	8	52	1.32
410683--410865	48	3.8	48	98	0	357	14	10	48	27	1.76
410716--410853	27	5.6	27	62	25	79	15	10	48	25	1.77
410827--410956	33	3.9	33	92	0	206	10	7	50	32	1.64
412505--412571	2	33.5	2	100	0	134	49	0	0	50	1.00
413500--413553	25	2.2	25	83	6	65	57	1	1	38	1.20
413769--413810	19	2.3	18	84	12	50	71	2	2	23	1.10
413771--413810	13	3.1	13	85	0	53	70	2	2	25	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419041--419100	21	3.0	20	78	9	68	56	1	0	41	1.09
423772--423834	30	2.1	30	82	5	74	14	23	14	47	1.80
435409--435480	24	2.7	26	78	20	76	59	1	1	37	1.15
435847--435892	24	1.9	24	82	8	58	47	0	0	52	1.00
439678--439717	6	6.7	6	97	0	53	25	57	17	0	1.40
439678--439717	12	3.3	12	92	0	62	25	57	17	0	1.40
441256--441317	33	1.9	32	93	3	106	32	27	16	24	1.96
442954--443006	10	5.5	10	75	22	51	24	0	3	71	1.02
442953--443006	20	2.8	19	86	5	74	25	0	3	70	1.04
444964--445037	28	2.7	27	77	12	78	35	2	0	62	1.10
444964--445022	27	2.1	28	84	9	77	33	0	0	66	0.92
445166--445303	72	1.9	74	90	3	226	40	11	4	43	1.61
446687--446725	20	2.0	20	95	5	71	51	0	0	48	1.00
456569--456603	12	2.7	13	86	13	54	8	14	0	77	0.99
462694--462755	30	2.1	30	90	0	97	27	12	8	51	1.68
463191--463270	31	2.6	30	78	7	79	42	11	17	28	1.84
464494--464519	12	2.2	12	100	0	52	69	0	0	30	0.89
469248--469293	17	2.7	17	87	12	60	45	2	2	50	1.26
469970--470027	21	2.6	22	80	15	66	46	1	5	46	1.35
470279--470310	16	2.0	16	93	0	55	21	18	18	40	1.91
471097--471167	29	2.4	29	83	4	81	36	26	1	35	1.66
487496--487532	13	2.6	15	79	16	51	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489677--489711	17	2.0	18	88	5	54	42	2	17	37	1.64
490405--490478	29	2.5	29	86	4	94	50	14	14	20	1.78
499297--499342	24	1.9	24	90	0	74	6	4	10	78	1.08
499297--499350	24	2.2	24	83	0	63	5	5	12	75	1.15
499299--499436	59	2.3	62	76	17	148	7	6	15	71	1.30
499315--499372	22	2.7	22	78	7	57	5	5	15	74	1.18
499337--499409	37	2.0	37	86	5	103	6	6	15	71	1.29
499374--499424	25	2.2	24	86	10	70	7	5	15	70	1.30
499601--499644	12	3.7	12	93	6	72	22	0	9	68	1.18
499601--499650	24	2.2	22	86	13	66	22	0	8	70	1.13
499625--499668	21	2.1	21	83	8	54	25	0	9	65	1.21
501604--501642	7	5.7	7	87	6	53	10	0	41	48	1.37
501602--501642	20	2.0	20	90	0	64	9	0	43	46	1.36
501604--501642	13	2.9	14	84	7	53	10	0	41	48	1.37
502020--502139	63	1.9	61	83	3	150	37	12	4	45	1.61
506657--506682	12	2.2	12	100	0	52	42	7	15	34	1.75
510586--510619	18	1.9	17	88	5	50	35	0	2	61	1.11
511953--512002	24	2.1	25	85	7	68	50	10	16	24	1.75
515373--515397	13	1.9	13	100	0	50	32	24	4	40	1.73
521030--521078	24	2.0	24	84	7	64	32	18	18	30	1.95
521487--521521	17	2.0	18	88	5	54	37	0	5	57	1.23
521553--521983	60	7.3	59	75	10	292	30	18	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521622--521983	59	6.2	59	75	8	301	30	17	15	36	1.91
522017--522177	56	2.8	59	77	8	177	38	16	20	24	1.92
521987--522188	61	3.4	60	76	8	216	38	15	16	29	1.90
523524--523587	23	2.8	23	83	7	76	34	21	25	18	1.96
534860--534924	24	2.7	24	87	2	94	24	7	4	63	1.41
537784--537840	17	3.6	17	75	15	59	40	0	0	59	0.97
537780--537836	11	5.4	11	74	19	50	42	0	0	57	0.98
537795--537850	19	3.0	20	82	14	59	42	0	0	57	0.99
540859--540900	21	2.0	21	86	13	59	54	0	2	42	1.13
541905--542064	51	3.2	51	91	5	272	23	17	11	47	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120