genome.fa.s5.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  37  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9589954--9589983	15	1.9	16	93	6	53	23	0	3	73	0.98
9590272--9590308	11	3.5	10	86	13	56	67	0	0	32	0.91
9591959--9592023	23	2.9	22	79	4	76	41	3	3	52	1.32
9592117--9592192	32	2.4	31	77	2	80	30	17	9	43	1.80
9601679--9601721	16	2.7	16	92	0	68	32	25	0	41	1.56
9601670--9601741	32	2.2	32	77	0	81	30	23	4	41	1.73
9604348--9604423	28	2.6	30	81	10	102	39	17	0	43	1.49
9604367--9604427	28	2.2	28	100	0	122	39	19	0	40	1.52
9606528--9606587	29	2.1	29	100	0	120	23	6	35	35	1.81
9607866--9607899	18	1.9	17	88	5	50	76	0	0	23	0.79
9616273--9616349	29	2.7	29	89	0	109	33	12	28	24	1.93
9616382--9616461	28	2.8	29	80	17	73	30	18	20	31	1.96
9619247--9619294	20	2.3	21	86	13	64	68	0	12	18	1.20
9630232--9630265	6	5.5	6	93	6	59	85	0	14	0	0.60
9632052--9632102	19	2.6	19	81	12	50	49	1	5	43	1.38
9633287--9633340	28	1.9	28	81	7	65	62	1	3	31	1.23
9635070--9635397	114	2.9	114	80	0	370	25	25	15	34	1.94
9635792--9635942	49	3.1	49	80	3	205	21	26	16	35	1.94
9638169--9638257	44	2.0	44	97	0	169	37	11	19	32	1.87
9640173--9640215	18	2.5	17	85	11	52	79	2	0	18	0.85
9640168--9640206	20	1.9	21	89	5	62	79	2	0	17	0.84
9641818--9642005	51	3.7	51	90	2	281	32	16	21	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9649144--9649281	51	2.6	50	79	7	141	31	15	23	30	1.95
9659543--9659593	25	2.0	25	82	14	61	66	5	1	25	1.24
9659705--9659762	27	2.1	27	87	12	84	63	6	6	22	1.43
9660088--9660144	21	2.7	21	97	0	105	70	0	10	19	1.16
9661834--9662363	101	5.2	101	82	4	509	26	17	18	36	1.93
9662213--9662363	51	3.0	50	71	5	151	26	15	17	39	1.90
9661935--9662370	202	2.2	202	87	0	620	25	17	19	36	1.94
9669524--9669562	15	2.7	14	84	7	51	74	7	7	10	1.22
9669524--9669562	20	2.0	20	85	10	53	74	7	7	10	1.22
9680078--9680128	26	1.9	27	88	11	79	62	9	1	25	1.36
9680078--9680135	27	2.1	27	84	12	75	62	8	5	24	1.45
9680225--9680255	10	3.0	10	90	9	53	67	9	12	9	1.41
9681582--9681627	23	2.0	23	100	0	92	8	8	34	47	1.65
9682180--9682216	19	1.9	19	88	0	56	54	2	8	35	1.44
9682542--9682591	18	2.8	18	87	3	75	50	0	4	46	1.20
9692356--9692396	16	2.4	17	92	8	66	73	4	4	17	1.19
9692404--9692563	6	26.3	6	75	11	76	16	8	3	71	1.23
9692417--9692441	9	2.8	9	100	0	50	20	8	0	72	1.10
9692428--9692482	20	2.7	20	88	2	74	20	9	0	70	1.13
9692404--9692480	13	5.6	14	70	18	56	18	7	0	74	1.06
9693458--9693515	22	2.7	19	78	21	62	77	0	17	5	0.94
9697227--9697276	18	2.8	17	81	3	64	48	0	2	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9699132--9699164	16	2.1	16	94	0	57	39	6	27	27	1.80
9700967--9701018	24	2.2	24	82	0	59	53	3	3	38	1.37
9700997--9701042	10	4.7	10	81	7	51	45	0	2	52	1.13
9701038--9701077	21	1.9	21	85	10	55	35	2	5	57	1.34
9701655--9701687	15	2.2	15	100	0	66	36	6	15	42	1.71
9714607--9714643	12	3.1	12	85	14	58	59	0	40	0	0.97
9715063--9715160	47	2.1	47	100	0	196	28	18	9	43	1.80
9716595--9716649	24	2.2	24	87	3	74	45	9	16	29	1.78
9719280--9719322	12	3.6	12	84	6	52	0	30	0	69	0.88
9719280--9719319	21	1.9	21	94	0	71	0	30	0	70	0.88
9737190--9737256	3	23.3	3	71	19	54	2	29	0	67	1.06
9737191--9737251	12	5.6	11	75	16	65	1	27	0	70	0.97
9750522--9750583	21	3.0	21	87	0	79	37	8	12	41	1.73
9750991--9751019	15	1.9	15	100	0	58	55	3	13	27	1.55
9764452--9764517	17	3.9	17	80	7	71	16	15	13	54	1.71
9771229--9771306	4	18.8	4	79	17	79	23	2	0	74	0.94
9771227--9771315	4	18.4	5	80	19	61	23	3	0	73	0.99
9773262--9773468	108	1.9	108	88	3	310	33	13	25	28	1.93
9773956--9773986	8	3.8	8	95	4	53	38	0	35	25	1.56
9795493--9795846	123	2.9	123	90	2	538	41	9	10	39	1.70
9800571--9800611	21	2.0	21	95	0	73	36	7	17	39	1.77
9803681--9803722	21	2.0	21	85	0	57	40	7	14	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9804061--9804128	33	2.0	34	94	2	120	35	17	4	42	1.69
9814625--9814788	85	1.9	85	88	4	251	36	17	23	22	1.94
9814543--9815122	209	2.8	208	87	2	786	37	17	22	23	1.94
9814830--9814999	85	2.0	85	81	2	198	38	15	22	23	1.93
9817007--9817333	60	5.5	59	87	2	386	37	24	0	37	1.60
9817309--9817387	28	2.8	29	81	11	85	37	20	0	41	1.52
9817010--9817378	30	12.5	29	78	8	293	38	23	0	37	1.59
9820614--9820660	24	2.0	23	83	8	58	29	12	21	36	1.91
9825909--9825968	15	3.9	15	74	8	57	48	0	1	50	1.11
9825921--9825991	30	2.3	32	76	11	76	50	0	1	47	1.09
9826016--9826053	16	2.5	16	87	8	53	47	0	0	52	1.00
9825983--9826051	24	3.0	23	79	8	68	47	0	2	49	1.16
9825957--9826109	61	2.5	62	82	3	184	47	1	1	49	1.21
9826216--9826304	46	2.0	46	82	12	114	41	22	3	32	1.70
9826811--9826865	23	2.4	23	82	11	76	25	20	9	45	1.80
9831570--9831647	29	2.7	27	75	11	66	33	11	26	28	1.91
9831663--9831723	29	2.1	29	85	8	81	39	0	26	34	1.57
9831653--9831725	29	2.5	30	78	13	80	39	1	24	34	1.64
9832614--9832653	20	1.9	22	85	10	57	32	20	17	30	1.95
9832854--9832894	7	6.0	7	83	11	50	34	0	0	65	0.93
9832855--9832903	20	2.5	21	83	12	68	34	2	0	63	1.06
9833503--9833645	6	24.0	6	70	13	100	55	4	0	39	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9833573--9833628	11	4.9	11	85	10	69	58	1	0	39	1.08
9833541--9833644	11	9.2	11	72	6	64	56	3	0	39	1.17
9833503--9833645	17	8.4	17	75	11	123	55	4	0	39	1.21
9834034--9834826	209	3.8	209	88	0	1066	21	22	19	36	1.95
9846665--9846843	29	6.2	28	77	14	159	36	1	26	35	1.64
9846662--9846845	57	3.2	57	84	9	221	36	1	26	35	1.64
9847964--9848000	7	5.4	7	87	12	51	32	0	0	67	0.91
9848611--9848700	17	5.6	17	71	20	77	56	5	0	37	1.23
9848774--9848901	61	2.1	61	85	5	170	45	1	3	50	1.27
9848916--9848942	6	4.5	6	100	0	54	66	14	0	18	1.25
9849019--9849121	44	2.3	44	96	0	197	41	22	1	33	1.65
9849152--9849196	16	2.8	16	86	0	63	24	31	6	37	1.81
9850337--9850403	29	2.3	28	85	10	82	40	5	10	43	1.63
9851541--9851586	18	2.4	20	82	17	62	32	0	2	65	1.05
9853488--9853533	18	2.4	19	85	7	58	60	2	2	34	1.21
9853633--9853664	15	2.1	15	94	0	55	75	3	0	21	0.95
9854903--9854967	32	2.0	32	85	5	87	55	3	1	40	1.25
9862675--9862728	6	9.0	6	89	0	81	53	1	0	44	1.11
9865977--9866004	8	3.5	8	100	0	56	32	0	10	57	1.33
9870478--9870506	14	2.1	14	100	0	58	27	34	20	17	1.95
9874144--9874249	25	4.2	25	90	1	158	23	18	27	30	1.98
9876235--9876265	15	2.1	15	93	0	53	9	0	22	67	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9876957--9876995	20	2.0	19	85	14	53	79	0	7	12	0.93
9877323--9877380	19	3.2	18	81	11	66	58	0	3	37	1.15
9877518--9877567	11	4.8	11	73	14	52	46	2	2	50	1.24
9878985--9879017	18	1.9	17	93	6	50	57	0	6	36	1.23
9879032--9879065	18	1.9	17	88	5	50	64	2	0	32	1.08
9886866--9886904	18	2.1	19	85	9	53	41	0	15	43	1.46
9890836--9890864	14	2.0	15	93	6	51	17	6	0	75	1.01
9911195--9911237	12	3.6	12	80	0	50	0	37	0	62	0.95
9916583--9916613	14	2.2	14	100	0	62	35	16	22	25	1.94
9918592--9918750	80	2.0	81	87	1	230	41	19	10	28	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120