genome.fa.s5.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  21  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5590546--5590985	221	2.0	219	99	0	862	46	1	7	44	1.39
5591466--5591501	18	2.1	18	89	5	56	41	0	25	33	1.55
5591797--5591833	18	2.1	18	89	0	56	48	0	27	24	1.51
5604093--5604161	29	2.3	30	80	2	86	34	7	24	33	1.83
5604112--5604305	29	6.7	30	74	15	142	36	2	28	33	1.69
5604111--5604334	58	3.9	58	78	13	187	37	2	27	33	1.69
5604176--5604342	29	5.8	28	75	11	113	38	1	25	34	1.66
5604111--5604376	88	3.0	84	73	14	209	36	3	27	32	1.74
5605483--5605525	3	14.7	3	80	4	52	34	4	0	60	1.17
5606273--5606365	11	8.9	10	72	21	68	55	4	0	39	1.19
5606287--5606366	17	4.7	17	87	0	115	55	5	0	40	1.22
5606273--5606366	6	16.7	6	71	20	69	55	4	0	40	1.19
5609586--5609722	39	3.5	38	78	5	132	23	18	21	36	1.95
5611901--5611936	12	2.8	13	87	12	56	33	5	0	61	1.19
5614564--5614600	16	2.3	17	86	9	51	29	0	0	70	0.88
5616207--5616266	31	2.0	31	86	3	86	33	3	11	51	1.55
5619189--5619243	2	28.0	2	96	3	103	49	0	0	50	1.00
5619559--5619612	21	2.8	20	73	18	51	5	33	1	59	1.31
5620800--5620895	41	2.3	41	92	0	156	36	26	6	31	1.81
5635156--5635235	27	3.0	27	83	0	106	25	17	26	31	1.97
5635204--5635410	25	8.2	25	80	3	209	24	16	25	33	1.96
5635204--5635410	75	2.7	75	81	3	245	24	16	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5635377--5635440	26	2.5	26	82	5	67	28	15	25	31	1.96
5636243--5636277	18	1.9	18	88	0	52	54	0	0	45	0.99
5636240--5636290	21	2.6	19	77	14	59	49	0	0	50	1.00
5637321--5637359	18	2.2	19	86	9	55	56	0	23	20	1.42
5643528--5643567	19	2.0	20	90	4	64	47	10	25	17	1.78
5645395--5645434	20	2.0	20	95	0	71	45	0	17	37	1.49
5645480--5645628	47	3.2	47	81	1	165	32	14	17	36	1.90
5645505--5645631	47	2.7	47	83	2	166	30	13	18	37	1.90
5647495--5647539	16	2.8	16	82	3	54	42	2	0	55	1.12
5660761--5660991	50	4.6	50	86	1	275	20	25	15	38	1.91
5660761--5660991	100	2.3	100	87	0	318	20	25	15	38	1.91
5661963--5661992	2	15.5	2	93	6	53	46	0	0	53	1.00
5664953--5665265	50	6.3	50	89	1	450	20	27	17	34	1.95
5670162--5670220	30	2.0	29	86	3	82	32	6	1	59	1.34
5670185--5670224	21	1.9	21	84	0	53	37	5	0	57	1.21
5670171--5670233	30	2.1	30	85	5	83	42	4	1	50	1.32
5670985--5671016	13	2.5	13	89	0	55	31	12	9	46	1.73
5671475--5671602	32	4.2	32	71	10	97	46	12	17	23	1.81
5671413--5671602	91	2.1	88	80	5	202	45	12	17	24	1.83
5671878--5671942	35	1.9	35	84	6	89	40	0	3	56	1.15
5671937--5671982	15	2.9	16	75	12	51	56	0	2	41	1.11
5676914--5676962	26	2.0	25	84	15	66	40	8	2	48	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5679193--5679266	21	3.5	21	92	0	112	24	14	52	8	1.69
5679193--5679246	12	5.1	11	77	22	62	27	14	53	3	1.58
5679193--5679278	21	4.1	21	92	0	100	22	12	52	12	1.73
5679249--5679299	24	2.1	24	88	0	75	9	17	50	21	1.74
5684717--5684760	22	2.0	22	86	0	61	43	2	0	54	1.12
5684822--5684874	23	2.2	24	86	3	81	45	0	5	49	1.26
5687372--5687414	18	2.4	18	80	7	52	51	0	2	46	1.13
5696191--5696246	28	2.0	28	96	0	103	37	23	14	25	1.92
5696847--5696888	17	2.6	16	78	14	50	61	7	0	30	1.22
5698018--5698213	29	6.6	30	78	7	186	38	1	23	36	1.62
5698034--5698213	58	3.1	58	86	3	218	38	1	23	36	1.63
5698079--5698241	58	2.8	58	84	7	170	41	1	22	34	1.64
5699070--5699113	13	3.3	13	81	6	52	22	4	20	52	1.65
5699072--5699113	14	3.1	14	86	3	50	19	4	21	54	1.62
5699127--5699205	34	2.3	34	88	0	113	59	5	2	32	1.33
5699158--5699213	7	8.1	7	74	18	55	57	1	0	41	1.09
5699122--5699205	17	5.0	17	78	7	82	58	4	2	34	1.32
5699645--5700051	78	5.2	78	79	2	386	27	18	28	25	1.98
5699647--5700432	39	20.2	38	67	15	302	26	18	29	25	1.98
5699646--5700072	156	2.7	156	79	2	453	27	18	27	25	1.98
5700113--5700440	78	4.2	78	84	1	399	25	19	31	23	1.98
5699829--5700283	194	2.3	195	81	4	501	27	19	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5711782--5711833	14	3.6	14	77	12	52	61	5	11	21	1.50
5711967--5712289	59	5.4	60	79	9	306	37	2	24	35	1.68
5711959--5712029	29	2.4	29	75	15	74	39	5	18	36	1.74
5711974--5712267	30	9.9	29	79	12	267	36	2	25	35	1.69
5711964--5712356	30	13.0	29	73	17	169	39	2	23	35	1.66
5712253--5712326	37	2.0	37	100	0	148	43	0	21	35	1.53
5713999--5714073	16	4.6	17	81	8	93	56	4	2	37	1.32
5714001--5714082	32	2.5	32	84	6	101	56	3	2	37	1.30
5713999--5714082	17	5.1	17	82	8	93	55	3	2	38	1.30
5732472--5732518	14	3.3	14	82	11	51	48	4	0	46	1.21
5733095--5733138	20	2.1	21	84	12	56	65	20	2	11	1.35
5733344--5733386	18	2.4	18	92	0	68	32	23	2	41	1.67
5735197--5735277	30	2.7	30	100	0	162	34	7	3	54	1.46
5735593--5735667	30	2.5	30	79	12	82	56	2	2	38	1.28
5735901--5735965	31	2.1	31	82	5	78	27	12	10	49	1.73
5736585--5736633	15	3.4	14	81	13	55	67	2	2	28	1.13
5745945--5745971	2	13.5	2	100	0	54	51	0	48	0	1.00
5748520--5748559	13	3.0	13	88	3	53	67	0	32	0	0.91
5748586--5748610	12	2.1	12	100	0	50	36	0	0	64	0.94
5749244--5749292	16	3.2	16	72	21	59	61	8	0	30	1.25
5749325--5749416	30	3.1	30	69	9	98	34	6	13	45	1.69
5751254--5751345	45	2.0	45	95	0	166	32	31	17	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5754554--5754591	19	2.0	19	85	10	51	0	31	2	65	1.06
5754855--5754927	36	2.1	36	87	7	105	46	2	4	46	1.36
5758227--5758287	31	2.0	32	83	6	81	55	3	8	32	1.45
5758353--5758460	2	57.5	2	69	21	56	51	2	0	44	1.22
5758357--5758397	9	4.7	9	85	14	59	46	0	0	53	1.00
5762619--5762652	17	2.0	17	88	0	50	23	0	5	70	1.09
5764162--5764193	5	6.4	5	100	0	64	40	59	0	0	0.97
5767514--5767560	22	2.1	22	88	7	69	21	0	21	57	1.41
5769034--5769192	63	2.5	63	84	0	192	36	18	12	32	1.89
5769962--5770002	12	3.3	12	82	3	55	80	2	7	9	0.99
5778766--5778828	27	2.3	27	88	0	99	19	46	4	30	1.70
5778813--5778839	12	2.2	12	100	0	54	7	59	0	33	1.25
5778786--5778866	39	2.1	39	90	4	128	17	46	2	33	1.61
5778825--5778916	27	3.4	27	86	0	121	17	38	7	36	1.78
5778764--5778894	66	2.0	66	84	3	174	18	42	5	33	1.73
5780252--5780286	18	1.9	18	88	0	52	34	2	5	57	1.37
5781044--5781093	19	2.5	19	81	15	57	6	14	6	74	1.21
5800687--5800880	52	3.7	52	90	0	280	25	14	25	34	1.94
5804686--5804855	89	1.9	89	81	9	204	35	16	10	37	1.82
5806143--5806300	80	2.0	80	91	5	257	31	23	22	22	1.98
5812412--5812445	14	2.3	15	90	5	52	47	2	2	47	1.32
5814185--5814275	23	4.0	23	83	0	110	49	15	3	31	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5814773--5814850	36	2.2	36	85	0	102	39	25	6	28	1.80
5827886--5827919	17	1.9	18	88	5	52	41	0	0	58	0.98
5830531--5830581	25	2.0	25	100	0	102	49	11	15	23	1.78
5835182--5835210	14	2.0	15	93	6	51	41	0	20	37	1.53
5841913--5841971	17	3.6	16	84	11	66	18	3	35	42	1.67
5842457--5842550	47	2.0	48	89	2	145	18	21	18	42	1.89
5842386--5842817	122	3.5	123	87	2	598	20	20	18	40	1.92
5842849--5842943	48	2.0	48	87	0	136	22	20	15	42	1.89
5842696--5843147	145	3.1	145	87	1	629	21	20	19	39	1.93
5848650--5848703	28	1.9	28	92	0	90	20	33	16	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120