genome.fa.s5.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  116  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35159770--35159825	29	1.9	29	82	13	71	46	1	0	51	1.11
35160677--35160767	38	2.4	38	83	3	112	39	4	6	49	1.49
35166165--35166190	2	13.0	2	100	0	52	0	0	50	50	1.00
35166901--35166988	46	2.0	44	91	6	142	47	7	9	35	1.64
35171107--35171228	60	2.0	60	100	0	244	34	24	8	32	1.85
35171902--35171951	23	2.1	24	82	10	59	28	24	0	48	1.52
35173986--35174065	41	2.0	41	94	0	142	27	5	30	37	1.78
35190460--35190525	29	2.2	30	83	2	80	28	3	10	57	1.47
35190881--35190905	11	2.3	11	100	0	50	24	8	40	28	1.83
35193563--35193592	15	1.9	16	93	6	53	66	0	3	30	1.07
35193858--35193931	2	37.0	2	94	0	130	51	1	0	47	1.09
35194144--35194191	25	2.0	24	91	4	78	43	0	2	54	1.12
35194161--35194196	16	2.1	16	90	10	54	47	0	0	52	1.00
35194268--35194321	27	2.0	27	82	10	67	61	11	3	24	1.46
35201633--35201678	22	2.0	24	83	8	60	58	4	0	36	1.18
35202328--35202396	29	2.4	27	75	13	66	49	13	2	34	1.56
35205566--35205592	2	13.5	2	100	0	54	51	0	0	48	1.00
35217132--35217185	18	3.4	15	79	18	56	35	0	0	64	0.94
35218731--35218771	2	20.5	2	100	0	82	48	0	0	51	1.00
35233422--35233681	135	1.9	136	92	0	441	27	19	15	37	1.92
35238970--35239004	11	3.2	11	88	12	54	31	0	0	68	0.90
35244878--35244928	23	2.2	23	96	0	93	37	5	9	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35256703--35256747	22	2.0	23	91	4	74	8	11	20	60	1.57
35258850--35258889	2	20.0	2	100	0	80	50	0	0	50	1.00
35259007--35259035	2	14.5	2	100	0	58	48	0	0	51	1.00
35261215--35261269	19	2.9	19	76	10	60	36	0	0	63	0.95
35261518--35261549	5	6.4	5	100	0	64	37	0	62	0	0.95
35264456--35264500	6	7.5	6	100	0	90	17	33	0	48	1.48
35264651--35264696	22	2.1	22	100	0	92	32	17	4	45	1.68
35264655--35264704	22	2.5	20	87	12	68	34	20	4	42	1.70
35269451--35269547	43	2.2	42	80	8	115	52	12	5	29	1.60
35280486--35280530	2	22.5	2	100	0	90	51	0	48	0	1.00
35295320--35295367	18	2.7	18	86	0	69	22	27	0	50	1.50
35295320--35295364	6	7.5	6	84	0	54	22	28	0	48	1.50
35295320--35295368	12	4.1	12	81	0	62	22	26	0	51	1.49
35303931--35303979	18	2.7	18	90	0	80	22	26	0	51	1.49
35303931--35303975	6	7.5	6	92	0	72	22	28	0	48	1.50
35313135--35313178	16	2.8	16	80	10	54	20	13	2	63	1.40
35319736--35319793	28	2.1	28	96	0	107	41	17	1	39	1.59
35319743--35319793	17	3.4	17	65	30	51	41	17	1	39	1.61
35323140--35323199	31	1.9	31	90	6	95	38	21	18	21	1.94
35342215--35342276	29	2.1	30	82	8	74	43	1	4	50	1.33
35343292--35343358	18	3.8	19	68	28	58	52	8	0	38	1.33
35347427--35347469	3	14.3	3	100	0	86	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35349748--35349966	110	2.0	110	92	1	368	29	21	22	25	1.99
35357473--35357557	31	2.7	30	79	17	93	28	2	5	63	1.30
35366887--35366936	2	25.5	2	79	4	57	2	44	2	52	1.24
35367746--35367771	2	13.0	2	100	0	52	50	0	0	50	1.00
35368836--35368863	2	14.0	2	100	0	56	50	0	0	50	1.00
35386778--35386824	23	2.0	24	83	4	60	40	4	0	55	1.19
35392122--35392159	20	1.9	20	88	0	58	39	2	0	57	1.12
35392639--35392671	17	1.9	17	93	0	57	48	0	0	51	1.00
35397183--35397217	18	1.9	18	88	0	52	51	5	5	37	1.50
35399872--35399904	16	2.1	16	94	0	57	15	0	6	78	0.93
35400486--35400527	9	4.7	9	84	0	57	21	0	2	76	0.90
35401909--35401972	24	2.3	26	80	17	60	34	0	1	64	1.03
35426282--35426340	13	4.6	13	78	21	63	38	0	1	59	1.08
35426283--35426339	15	4.4	13	77	18	57	38	0	1	59	1.08
35429407--35429466	30	2.1	28	82	17	70	48	0	5	46	1.24
35429474--35429533	28	2.0	30	84	9	79	46	0	1	51	1.10
35444535--35444900	188	1.9	188	91	0	588	40	9	13	36	1.76
35448236--35448261	3	8.7	3	100	0	52	69	0	0	30	0.89
35451781--35451861	31	2.7	30	72	11	83	50	7	13	28	1.68
35458716--35458771	26	2.2	25	87	3	76	42	5	12	39	1.65
35460092--35460135	19	2.3	20	84	11	65	54	0	0	45	0.99
35460106--35460158	11	4.9	11	71	28	51	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35460125--35460158	12	2.8	12	87	12	52	50	2	0	47	1.16
35461564--35461604	11	3.4	12	86	10	57	0	17	2	80	0.82
35470878--35470912	13	2.6	13	90	4	52	80	0	0	20	0.72
35470878--35470910	14	2.4	14	94	0	57	84	0	0	15	0.61
35474850--35474984	66	2.0	66	95	0	243	29	20	22	27	1.98
35479725--35479754	12	2.5	12	100	0	60	13	10	0	76	1.01
35481613--35481662	21	2.2	24	79	13	61	48	2	2	48	1.24
35506357--35506414	24	2.4	24	79	0	62	13	44	27	13	1.82
35513608--35513666	31	2.0	30	86	6	84	52	11	1	33	1.48
35516534--35516582	23	2.2	22	81	3	53	55	6	10	28	1.57
35516947--35516981	18	1.9	18	88	0	52	17	8	37	37	1.80
35519164--35519216	4	13.2	4	100	0	106	50	24	0	24	1.49
35523500--35523564	29	2.2	29	91	2	103	44	16	9	29	1.79
35525353--35525419	19	3.5	20	75	17	70	35	0	1	62	1.04
35525364--35525419	25	2.2	26	87	12	82	33	0	1	64	1.04
35525781--35525831	23	2.2	22	76	10	57	60	7	5	25	1.47
35533985--35534023	20	2.0	20	85	10	53	64	0	20	15	1.30
35535784--35535833	25	2.0	25	100	0	100	40	8	24	28	1.83
35538757--35538970	97	2.2	96	86	2	286	54	12	13	20	1.70
35539011--35539093	42	2.0	42	87	0	121	46	18	7	27	1.75
35539244--35539360	42	2.8	42	78	7	139	45	18	6	29	1.75
35544462--35544518	24	2.3	25	84	3	80	42	5	15	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35556398--35556437	21	1.9	21	85	10	55	67	5	0	27	1.11
35559175--35559229	22	2.7	20	73	13	58	63	7	5	23	1.41
35559173--35559227	25	2.2	25	80	6	67	63	7	5	23	1.41
35569902--35569950	2	24.5	2	100	0	98	48	0	0	51	1.00
35571499--35571542	20	2.1	21	83	4	54	45	0	6	47	1.29
35578825--35578866	21	2.0	22	85	4	59	78	2	0	19	0.86
35579535--35579575	13	3.2	13	85	0	55	26	24	17	31	1.97
35585384--35585415	2	16.0	2	100	0	64	0	0	50	50	1.00
35585415--35585448	2	17.0	2	100	0	68	50	0	50	0	1.00
35605065--35605134	24	2.9	23	83	8	77	44	1	0	54	1.09
35616141--35616179	19	2.1	19	85	0	51	58	5	12	23	1.54
35618956--35619017	30	2.1	30	96	0	115	24	3	14	58	1.51
35624784--35624949	10	18.6	9	65	22	50	30	2	2	64	1.19
35624784--35624891	33	3.2	33	76	9	94	34	2	0	62	1.16
35624841--35624908	36	1.9	36	88	8	104	30	1	2	64	1.17
35624849--35624908	17	3.4	17	78	14	68	30	1	3	65	1.19
35624867--35624932	20	3.3	20	82	4	71	27	1	1	69	1.06
35624842--35624939	18	5.2	20	70	15	66	26	2	3	68	1.15
35624806--35624949	10	15.8	9	67	19	52	30	2	2	64	1.19
35624842--35624942	19	5.4	18	73	16	80	27	1	2	67	1.16
35637732--35637781	16	3.2	16	73	21	52	34	0	6	60	1.21
35637958--35638030	25	2.7	27	81	10	87	36	2	1	58	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35637958--35638032	27	2.8	25	84	8	87	37	2	1	58	1.20
35638790--35638822	16	2.1	16	94	0	57	78	6	0	15	0.93
35642864--35642931	30	2.3	30	84	5	84	54	4	1	39	1.30
35643937--35643961	6	4.2	6	100	0	50	16	0	0	84	0.63
35656297--35656346	22	2.4	21	81	12	68	56	8	12	24	1.62
35656297--35656352	22	2.6	22	81	10	64	53	8	10	26	1.65
35671170--35671218	19	2.5	19	80	9	55	48	2	0	48	1.12
35671403--35671454	23	2.2	23	86	3	68	28	3	3	63	1.30
35671420--35671467	24	2.0	23	96	4	87	31	4	4	60	1.35
35682400--35682448	25	2.0	24	84	11	64	34	6	10	48	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120