genome.fa.s5.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  109  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31981116--31981332	117	1.9	117	84	5	296	33	30	4	32	1.77
31986768--31986817	22	2.3	22	82	3	57	66	6	4	24	1.32
32013344--32013385	13	2.9	14	80	13	50	52	0	2	45	1.13
32013349--32013378	15	1.9	16	93	6	53	60	0	0	40	0.97
32039165--32039265	50	2.0	50	98	0	193	44	5	12	36	1.67
32065516--32065589	37	2.0	37	97	0	139	29	17	5	47	1.70
32076795--32076863	34	2.0	34	88	2	102	46	10	26	17	1.79
32097840--32097986	58	2.5	56	81	10	170	46	2	1	49	1.24
32098080--32098173	44	2.1	44	86	7	127	37	26	5	30	1.79
32098155--32098210	16	3.5	16	95	0	103	26	32	5	35	1.79
32101055--32101110	29	1.9	29	92	0	94	8	5	14	71	1.29
32101066--32101125	29	2.1	28	81	12	68	6	5	18	70	1.29
32101086--32101177	44	2.1	44	88	8	134	7	5	18	68	1.34
32101095--32101177	23	3.7	22	74	6	78	7	4	19	68	1.31
32101324--32101408	38	2.2	38	80	12	93	28	0	7	64	1.19
32101599--32101625	5	5.4	5	100	0	54	18	62	18	0	1.32
32107533--32107579	21	2.2	21	84	0	58	17	6	40	36	1.75
32108704--32108751	23	2.1	24	84	7	64	41	12	8	37	1.73
32109030--32109064	18	2.0	17	88	5	52	65	0	8	25	1.21
32115445--32115501	20	2.8	20	86	0	78	10	28	26	35	1.89
32124871--32124902	16	2.0	16	100	0	64	37	12	18	31	1.88
32127371--32127412	18	2.3	18	84	8	50	23	4	4	66	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32128641--32128714	37	2.0	38	83	2	96	32	8	21	37	1.83
32131238--32131270	3	11.0	3	100	0	66	33	0	33	33	1.58
32140933--32141020	43	2.1	42	82	2	104	46	9	9	35	1.67
32143255--32143295	21	1.9	21	90	5	64	53	9	9	26	1.65
32155044--32155083	20	2.0	21	90	5	64	67	2	0	30	1.04
32155133--32155192	26	2.3	26	80	8	68	53	0	5	41	1.23
32160355--32160410	18	3.2	17	84	5	58	32	0	1	66	1.03
32160823--32160870	5	9.6	5	100	0	96	0	18	0	81	0.70
32175167--32175258	32	3.2	28	74	22	86	67	1	0	31	0.98
32175180--32175258	10	8.1	10	68	19	51	68	1	0	30	0.98
32175201--32175244	23	2.0	22	82	13	54	61	2	0	36	1.09
32188244--32188437	102	1.9	102	95	0	352	33	15	24	26	1.95
32188661--32188767	43	2.4	44	83	6	128	29	17	11	41	1.84
32199431--32199536	51	2.1	52	87	1	151	35	16	2	45	1.62
32216013--32216052	21	1.9	21	90	10	64	30	0	12	57	1.36
32216734--32216761	2	14.0	2	100	0	56	50	0	0	50	1.00
32219336--32219471	55	2.5	55	82	0	164	15	19	38	26	1.91
32219432--32219513	41	2.0	41	83	9	105	19	20	39	20	1.93
32222749--32222775	3	9.0	3	100	0	54	33	0	0	66	0.92
32223103--32223147	17	2.5	19	82	7	58	22	6	4	66	1.33
32223629--32223662	17	1.9	17	88	5	50	38	0	2	58	1.13
32228308--32228332	12	2.1	12	100	0	50	44	8	24	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32233372--32233409	18	2.0	20	90	10	62	55	0	2	42	1.14
32237650--32237691	16	2.6	16	80	0	57	50	0	0	50	1.00
32238333--32238358	6	4.3	6	100	0	52	15	53	0	30	1.42
32246420--32246481	27	2.2	27	80	5	70	27	1	3	67	1.15
32246594--32246644	23	2.2	23	82	10	59	43	1	5	49	1.38
32254459--32254525	6	11.2	6	81	12	84	46	0	1	52	1.09
32256138--32256463	163	2.0	162	86	4	451	24	15	13	46	1.82
32256556--32256642	30	2.8	30	73	18	81	33	27	5	33	1.81
32256561--32256934	59	6.3	59	90	1	572	31	28	5	35	1.80
32256561--32256934	118	3.2	118	94	1	635	31	28	5	35	1.80
32271754--32272021	136	2.0	136	94	0	473	38	17	18	25	1.93
32276208--32276256	27	1.9	26	84	12	66	38	4	6	51	1.46
32288515--32288576	30	2.0	32	84	6	83	46	4	4	43	1.46
32294548--32294582	3	11.7	3	87	0	52	60	37	2	0	1.12
32298489--32298550	30	2.1	30	100	0	124	29	6	12	51	1.65
32298489--32298568	30	2.7	30	88	3	90	26	8	15	50	1.72
32298580--32298640	30	2.0	30	100	0	122	34	13	22	29	1.92
32307504--32307533	9	3.3	9	90	0	51	0	23	0	76	0.78
32307545--32307570	3	8.7	3	100	0	52	0	30	34	34	1.58
32308346--32308407	30	2.1	29	82	14	74	67	4	0	27	1.10
32314929--32314973	7	6.4	7	100	0	90	42	13	28	15	1.85
32316398--32316587	95	2.0	95	100	0	380	35	10	24	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32318545--32318583	17	2.2	17	86	13	53	58	12	5	23	1.54
32319836--32319868	14	2.3	15	90	10	52	3	12	0	84	0.72
32322863--32322965	37	2.7	38	74	6	91	25	19	25	30	1.98
32325122--32325164	18	2.4	18	84	0	59	86	2	4	6	0.79
32325553--32325612	21	2.8	21	73	19	52	63	1	0	35	1.05
32325736--32325800	23	2.8	24	79	9	71	70	7	0	21	1.11
32325753--32325793	15	2.7	16	77	11	50	80	4	0	14	0.87
32327444--32327518	30	2.5	29	80	10	89	60	0	2	37	1.11
32328242--32328316	35	2.1	35	92	0	123	38	20	8	33	1.81
32330867--32330924	23	2.3	26	88	8	86	74	6	0	18	1.04
32330871--32330936	23	2.8	24	81	6	80	69	6	0	24	1.10
32331219--32331447	58	4.0	58	95	1	408	47	21	5	25	1.72
32359452--32359485	17	1.9	18	88	5	52	29	5	26	38	1.80
32365043--32365238	104	1.9	104	81	8	238	44	8	11	35	1.71
32366310--32366359	24	2.1	23	85	14	66	30	4	0	66	1.10
32369569--32369601	9	3.8	9	88	8	50	21	0	3	75	0.93
32369569--32369601	17	1.9	17	93	0	57	21	0	3	75	0.93
32370660--32370689	2	15.0	2	100	0	60	50	0	0	50	1.00
32390252--32390549	153	1.9	153	93	1	517	24	26	13	35	1.93
32392824--32392866	21	2.0	21	81	0	50	55	0	0	44	0.99
32392819--32392884	29	2.3	29	82	7	73	53	1	0	45	1.09
32395900--32395988	39	2.3	39	80	7	101	41	7	10	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32401117--32401165	16	3.0	17	79	8	57	40	10	0	48	1.37
32403512--32403545	17	2.0	18	88	11	54	41	8	0	50	1.34
32404106--32404160	29	2.0	27	86	13	78	60	1	30	7	1.35
32411256--32411348	46	2.0	46	83	4	116	22	4	18	54	1.60
32419905--32419935	2	16.0	2	93	6	55	51	0	0	48	1.00
32426907--32427239	130	2.6	129	87	2	461	27	20	5	46	1.71
32427800--32427831	16	1.9	17	93	6	57	56	0	3	40	1.15
32429221--32429406	101	1.9	100	84	1	255	35	11	19	33	1.88
32435726--32435753	2	14.0	2	100	0	56	50	0	0	50	1.00
32439955--32440002	23	2.1	23	100	0	96	27	4	33	35	1.76
32442844--32442891	21	2.2	22	85	10	64	47	0	0	52	1.00
32445951--32445993	22	1.9	23	90	4	70	53	2	11	32	1.50
32445975--32446036	31	2.1	29	85	14	83	59	3	9	27	1.44
32445975--32446036	30	2.1	28	85	14	81	59	3	9	27	1.44
32456644--32456704	30	2.0	31	83	3	79	37	11	1	49	1.49
32458651--32458692	20	2.1	20	82	8	50	61	2	0	35	1.09
32477590--32477643	18	2.9	19	84	10	67	29	1	1	66	1.12
32477849--32477886	2	19.0	2	100	0	76	50	0	0	50	1.00
32493948--32493974	4	6.8	4	100	0	54	25	25	22	25	2.00
32494668--32494719	20	2.6	21	79	11	56	57	1	0	40	1.10
32497023--32497350	161	2.0	161	94	1	570	30	21	15	32	1.94
32503553--32503577	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32507155--32507250	49	2.0	49	93	0	165	23	15	22	37	1.93
32513290--32513335	22	2.1	22	91	0	74	34	13	0	52	1.40
32519134--32519291	31	5.2	30	67	15	94	24	19	20	34	1.96
32519307--32519419	59	1.9	57	84	7	147	41	20	19	18	1.90
32523482--32523527	24	2.0	23	82	4	56	30	4	4	60	1.35
32525886--32525956	15	5.1	14	67	26	53	45	2	1	50	1.25
32525906--32525953	15	3.1	16	77	19	57	41	2	2	54	1.24
32541546--32541585	18	2.2	18	86	8	55	45	0	0	55	0.99
32552110--32552155	12	3.9	12	82	5	58	69	19	4	6	1.28
32552154--32552217	21	3.2	19	85	10	92	71	9	6	12	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120