genome.fa.s5.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  110  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32553265--32553294	2	15.0	2	100	0	60	50	0	0	50	1.00
32554527--32554598	36	2.0	36	88	0	108	25	37	12	25	1.91
32559241--32559330	31	2.9	31	78	6	83	45	12	8	33	1.73
32561535--32561638	23	4.4	23	87	2	136	11	20	23	45	1.83
32561535--32561674	23	6.0	23	79	12	133	12	20	21	45	1.84
32561538--32561686	69	2.1	69	84	9	187	13	20	20	46	1.83
32563988--32564032	14	3.1	14	84	6	63	28	0	0	71	0.87
32575304--32575422	61	2.0	60	91	3	195	41	9	6	42	1.63
32579159--32579206	23	2.1	22	84	7	60	22	0	4	72	1.01
32580180--32580222	22	2.0	22	86	9	61	62	0	4	32	1.15
32582520--32582584	30	2.2	30	91	0	103	60	13	1	24	1.43
32586315--32586450	42	3.2	42	63	13	107	41	12	13	32	1.83
32586301--32586456	85	1.8	85	97	0	294	40	12	14	32	1.84
32587369--32587456	30	2.9	29	86	6	113	46	22	26	4	1.71
32589780--32589826	21	2.2	22	81	11	62	65	0	0	34	0.93
32600503--32600546	20	2.1	22	84	12	58	56	4	0	38	1.20
32600732--32600799	31	2.2	31	81	5	84	55	17	4	22	1.59
32605211--32605374	58	2.8	59	84	4	206	40	17	17	25	1.91
32605210--32605402	31	6.4	30	68	8	115	41	16	17	24	1.89
32606091--32606224	67	2.0	66	88	1	196	33	13	7	45	1.71
32613361--32613403	20	2.1	20	87	12	61	55	9	0	34	1.32
32614781--32614813	6	5.5	6	100	0	66	15	84	0	0	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32624223--32624396	59	2.9	57	82	8	181	51	6	13	28	1.67
32624297--32624396	31	3.3	30	70	14	89	50	9	15	26	1.73
32629922--32630206	137	2.1	135	84	4	376	23	11	14	50	1.74
32630087--32630324	117	2.0	118	84	5	313	26	12	15	45	1.81
32629971--32630682	254	2.8	251	85	4	876	26	13	14	45	1.83
32630359--32630578	120	1.8	119	82	7	284	29	14	14	42	1.85
32641311--32641360	24	2.1	23	82	10	57	34	6	2	58	1.34
32641334--32641499	59	2.8	60	81	9	207	43	2	1	51	1.25
32641338--32641505	58	2.9	59	82	7	209	43	2	1	52	1.24
32641660--32641699	16	2.5	16	88	8	55	27	27	7	37	1.84
32642773--32642820	13	3.6	14	81	13	57	41	2	14	41	1.57
32642773--32642833	13	4.8	12	80	11	50	40	3	13	42	1.60
32642786--32642834	13	3.8	13	82	15	57	44	2	10	42	1.49
32646215--32646305	10	9.3	10	78	4	69	67	4	2	26	1.21
32648389--32649978	266	6.0	265	77	9	1265	23	13	24	37	1.91
32667435--32667471	19	1.9	19	88	0	56	32	5	2	59	1.34
32671144--32671241	31	3.1	31	92	1	160	37	15	7	39	1.75
32671655--32671684	3	10.3	3	92	7	53	30	0	0	70	0.88
32678938--32679004	10	6.9	10	72	13	50	31	1	8	58	1.38
32688267--32688297	15	2.1	15	93	0	53	29	12	22	35	1.91
32697571--32697765	96	2.0	96	100	0	390	29	7	9	53	1.61
32698525--32698588	31	2.1	30	82	5	76	40	10	6	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32699372--32699397	6	4.3	6	100	0	52	34	19	15	30	1.93
32699566--32699607	21	2.0	21	85	0	57	9	19	7	64	1.46
32699607--32699685	39	2.0	39	100	0	158	22	0	30	46	1.52
32699899--32700211	130	2.4	129	87	4	425	15	15	15	52	1.75
32706463--32706519	29	2.0	29	82	6	71	52	3	5	38	1.41
32711477--32711683	103	2.0	106	83	5	269	27	12	16	42	1.85
32715092--32715126	12	2.9	12	86	0	52	22	5	20	51	1.68
32715691--32715777	43	2.0	43	97	0	165	22	12	20	43	1.86
32715852--32715932	33	2.4	34	85	8	103	24	2	13	59	1.47
32718962--32719027	23	2.8	25	75	17	77	54	0	0	45	0.99
32718996--32719031	14	2.5	14	86	4	54	55	0	0	44	0.99
32720196--32720257	24	2.6	24	92	2	99	37	4	14	43	1.67
32724011--32724070	18	3.3	18	70	9	59	63	8	3	25	1.38
32723999--32724070	36	2.0	36	94	0	126	59	8	4	27	1.45
32725658--32725711	20	2.6	21	70	21	51	61	1	0	37	1.07
32725809--32725872	26	2.6	24	78	9	67	67	6	3	23	1.28
32726519--32726546	2	14.0	2	100	0	56	50	0	0	50	1.00
32729824--32729850	13	2.1	13	100	0	54	37	0	0	62	0.95
32730364--32730424	31	2.0	31	90	6	97	39	8	8	44	1.64
32731721--32731991	134	2.0	134	95	0	488	36	11	16	35	1.85
32737350--32737378	9	3.3	9	95	4	51	79	0	0	20	0.74
32738084--32738115	16	2.0	16	93	0	55	43	6	3	46	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32738279--32738330	17	3.1	18	78	13	58	51	0	1	46	1.12
32738280--32738342	17	3.7	16	78	17	56	50	1	1	46	1.20
32745725--32746324	163	3.8	161	83	7	698	29	19	14	36	1.92
32745725--32746324	314	1.9	316	82	7	761	29	19	14	36	1.92
32748507--32748627	61	2.0	61	96	0	224	47	9	11	31	1.71
32749924--32749958	17	2.2	17	90	10	56	31	0	2	65	1.07
32750251--32750295	23	2.0	23	82	8	56	37	0	0	62	0.96
32754128--32754154	2	13.5	2	100	0	54	48	0	0	51	1.00
32754901--32754944	22	2.0	21	86	4	61	36	40	4	18	1.71
32754924--32754953	13	2.3	13	94	0	51	40	33	6	20	1.78
32759850--32759906	26	2.2	26	90	0	87	42	15	5	36	1.70
32760262--32760311	19	2.9	17	75	21	59	34	4	0	62	1.14
32760277--32760402	66	1.9	66	81	3	155	35	5	3	54	1.42
32761854--32761885	11	2.9	11	95	0	55	43	0	0	56	0.99
32763693--32763727	18	1.9	18	94	0	61	20	0	11	68	1.20
32766051--32766089	18	2.1	19	85	4	53	51	2	2	43	1.29
32767193--32767251	30	2.0	30	82	0	73	47	10	10	32	1.71
32772341--32772427	42	2.0	43	93	2	149	27	21	16	34	1.95
32772645--32772697	27	2.0	27	85	10	74	30	3	0	66	1.10
32772640--32772704	27	2.4	28	80	12	73	30	3	1	64	1.18
32774695--32774729	2	17.5	2	87	0	52	45	0	0	54	0.99
32781781--32781806	10	2.6	10	100	0	52	7	0	0	92	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32787592--32787642	25	2.1	24	82	10	59	58	7	1	31	1.37
32788698--32788723	6	4.3	6	100	0	52	50	0	34	15	1.45
32788782--32788819	19	2.1	17	90	9	58	42	0	0	57	0.98
32789220--32789246	12	2.2	12	100	0	54	48	7	7	37	1.59
32789340--32789382	20	2.2	20	87	8	61	65	0	0	34	0.93
32796540--32796581	21	2.0	21	85	0	57	26	28	11	33	1.92
32797121--32797305	58	3.2	55	84	9	210	35	21	8	34	1.83
32797140--32797335	58	3.4	58	85	7	249	34	21	8	36	1.83
32801687--32801857	60	2.8	60	79	1	173	38	11	5	44	1.64
32801747--32801860	31	3.7	31	77	13	128	40	11	4	43	1.60
32801752--32801873	60	2.0	60	84	3	156	39	12	5	42	1.66
32819949--32820199	43	5.9	43	77	9	239	31	27	8	32	1.87
32819949--32820199	86	3.0	86	85	5	309	31	27	8	32	1.87
32823481--32823867	191	2.0	191	100	0	774	27	18	11	43	1.84
32824982--32825007	2	13.0	2	100	0	52	0	50	0	50	1.00
32825007--32825059	2	26.5	2	96	0	97	47	0	1	50	1.12
32853507--32853790	160	1.8	156	83	11	386	51	19	11	17	1.75
32855150--32855181	12	2.7	12	90	0	55	25	15	9	50	1.74
32856409--32856466	24	2.4	24	82	0	71	41	15	15	27	1.87
32858791--32858833	18	2.4	18	80	7	52	11	9	2	76	1.10
32859143--32859189	21	2.1	21	85	14	60	78	2	6	12	1.02
32872254--32872327	32	2.3	32	79	9	80	58	1	4	36	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32874116--32874157	22	1.9	22	90	9	68	50	2	2	45	1.27
32874144--32874193	22	2.2	24	86	13	79	38	0	0	62	0.96
32877194--32877233	16	2.6	15	84	7	62	25	0	2	72	0.97
32877388--32877430	23	1.9	23	95	4	79	67	0	0	32	0.91
32877379--32877448	29	2.4	30	85	2	88	61	2	0	35	1.11
32881165--32881218	20	2.7	20	77	8	56	42	0	0	57	0.98
32881165--32881217	22	2.4	22	81	15	65	41	0	0	58	0.98
32881185--32881229	22	2.0	21	83	8	54	46	2	0	51	1.13
32891383--32891484	47	2.1	49	90	3	163	51	15	4	27	1.64
32892720--32892781	28	2.2	27	82	5	70	45	0	3	51	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120