genome.fa.s5.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  68  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20039343--20039387	17	2.8	17	86	10	67	40	0	0	60	0.97
20039344--20039427	28	3.1	28	82	3	100	41	1	1	55	1.15
20039343--20039410	17	4.1	16	74	10	66	41	1	1	55	1.18
20039344--20039411	5	12.6	5	76	14	64	39	1	1	57	1.17
20040123--20040159	3	12.7	3	88	5	58	62	0	2	35	1.10
20040898--20041228	162	2.0	162	92	0	554	26	17	12	43	1.85
20041338--20041771	58	7.5	57	86	5	557	31	29	4	35	1.76
20041323--20041771	117	3.9	115	89	3	623	31	29	4	35	1.76
20041337--20041736	175	2.3	176	89	3	610	31	28	3	36	1.74
20049543--20049585	18	2.4	18	88	7	61	53	0	0	46	1.00
20052195--20052242	16	3.1	16	82	5	55	20	6	2	70	1.19
20066980--20067013	10	3.3	10	87	4	50	0	14	0	85	0.60
20067577--20067634	17	3.4	16	70	11	53	51	10	22	15	1.73
20079028--20079071	20	2.2	20	88	8	63	15	13	0	70	1.17
20079036--20079072	14	2.7	14	88	12	51	16	13	0	70	1.17
20081393--20081429	18	2.1	18	89	0	56	16	13	13	56	1.67
20081398--20081451	17	3.1	17	83	5	54	16	14	14	53	1.73
20081423--20081464	17	2.5	16	82	17	50	16	14	19	50	1.79
20082210--20082267	23	2.5	23	91	0	89	29	24	22	24	1.99
20086933--20086965	17	1.9	17	88	11	50	78	0	21	0	0.75
20088020--20088076	29	2.0	29	100	0	114	24	21	5	49	1.70
20097550--20099055	631	2.4	628	86	3	2107	34	16	17	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20099996--20101322	632	2.1	630	86	3	1853	34	16	17	31	1.93
20104003--20104038	16	2.2	16	95	0	63	58	13	5	22	1.56
20108977--20109016	20	2.0	21	90	5	64	0	30	0	70	0.88
20129414--20129454	19	2.1	20	82	13	50	2	26	0	70	0.99
20129989--20130031	16	2.7	16	81	0	50	13	2	9	74	1.16
20135686--20135720	17	2.1	17	88	0	52	54	0	0	45	0.99
20143868--20143972	47	2.2	47	86	0	147	35	18	28	18	1.94
20143946--20144294	50	7.0	50	80	3	346	35	16	30	17	1.92
20143946--20144604	149	4.3	149	77	9	499	34	16	31	17	1.93
20143946--20144604	99	6.5	99	73	9	477	34	16	31	17	1.93
20144283--20144313	15	2.1	15	100	0	62	35	12	25	25	1.92
20144184--20144412	114	2.0	114	88	1	343	34	16	31	17	1.92
20144298--20144604	50	6.2	50	81	5	327	33	16	32	17	1.93
20144035--20144557	263	2.0	263	85	0	715	33	16	31	17	1.93
20144354--20144650	99	3.0	97	75	8	269	35	17	29	17	1.93
20146663--20146707	24	2.0	23	83	16	58	35	11	6	46	1.66
20157581--20157616	16	2.2	17	95	5	65	36	0	2	61	1.11
20166406--20166439	10	3.4	10	95	0	59	14	20	0	64	1.28
20167278--20167312	16	2.1	17	94	5	63	37	2	0	60	1.12
20167871--20167905	17	2.1	17	94	0	61	54	0	0	45	0.99
20169111--20169158	24	2.0	25	84	12	64	56	18	6	18	1.62
20173973--20174011	17	2.3	17	90	0	60	15	12	25	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20176996--20177047	19	2.7	19	82	5	61	3	30	0	65	1.10
20177117--20177161	16	2.8	17	90	9	69	33	2	0	64	1.06
20177604--20177633	8	3.8	8	100	0	60	20	0	0	80	0.72
20187630--20187736	40	2.7	40	84	5	153	27	19	26	27	1.99
20188213--20188248	16	2.2	17	90	5	56	33	2	2	61	1.25
20199931--20199956	7	3.7	7	100	0	52	11	0	11	76	1.01
20216672--20216935	51	5.2	51	94	0	440	32	15	22	29	1.94
20218917--20218956	15	2.6	15	84	4	53	65	0	32	2	1.06
20219169--20219203	17	2.1	17	94	0	61	20	11	11	57	1.64
20223117--20223157	20	2.0	20	85	0	55	48	14	21	14	1.80
20226905--20226942	12	3.2	12	92	0	67	42	15	10	31	1.81
20230413--20230606	97	2.0	97	87	4	284	38	17	18	25	1.92
20230859--20231086	29	7.8	29	79	10	137	35	3	26	35	1.74
20230854--20231060	58	3.6	56	77	10	184	34	2	26	36	1.71
20230890--20231083	29	6.7	29	83	7	207	33	3	27	35	1.74
20230890--20231089	87	2.3	88	83	6	239	34	3	27	35	1.74
20230891--20231176	29	9.8	29	78	9	192	34	4	26	34	1.77
20231011--20231142	59	2.2	58	82	5	149	37	6	21	34	1.80
20231040--20231176	60	2.3	59	78	8	145	37	5	23	33	1.79
20233018--20233111	6	15.8	6	70	9	50	56	5	1	37	1.29
20233026--20233117	17	5.3	17	80	7	105	58	5	1	34	1.28
20233026--20233129	36	3.0	34	85	9	131	58	4	0	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20233600--20234761	208	5.6	209	90	1	1717	21	22	17	37	1.94
20234792--20235221	39	10.9	39	70	14	213	26	20	31	22	1.98
20234872--20235221	78	4.5	77	87	2	448	26	21	30	21	1.98
20234872--20235221	157	2.2	157	87	3	499	26	21	30	21	1.98
20235464--20235825	49	7.4	49	79	5	304	17	30	17	34	1.94
20236786--20236818	12	2.7	13	90	9	52	0	12	3	84	0.72
20236785--20236818	17	2.0	17	88	11	52	0	14	2	82	0.79
20241196--20241389	97	2.0	97	86	4	275	38	17	18	26	1.92
20241637--20241924	29	9.9	29	73	13	180	35	2	25	36	1.71
20241657--20241855	59	3.4	57	77	12	145	36	3	26	34	1.74
20241715--20241953	29	8.1	29	79	10	164	33	2	25	38	1.70
20241715--20241935	58	3.7	59	80	7	207	34	2	25	38	1.69
20241765--20241965	60	3.4	58	78	10	185	35	1	23	38	1.67
20243755--20243841	6	14.3	6	69	10	52	51	3	1	43	1.26
20243756--20243820	25	2.7	23	88	7	85	55	4	1	38	1.30
20243801--20243839	17	2.3	17	90	0	60	53	0	2	43	1.14
20248433--20248464	16	1.9	17	93	6	57	34	3	0	62	1.11
20263265--20263333	26	2.7	26	82	13	88	24	17	21	36	1.95
20267541--20267579	12	3.2	12	88	3	51	74	2	7	15	1.15
20267546--20267579	17	2.0	17	88	11	52	76	0	5	17	0.98
20269120--20269178	24	2.4	24	83	8	66	11	44	1	42	1.51
20269317--20269358	21	2.0	22	85	4	59	14	19	4	61	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20275173--20275202	14	2.2	14	94	5	53	30	23	10	36	1.87
20282537--20282583	21	2.3	21	88	3	69	65	0	31	2	1.04
20283641--20283681	13	3.2	13	86	6	57	85	0	14	0	0.60
20287214--20287247	7	4.9	7	92	0	59	61	0	26	11	1.30
20291546--20291591	10	4.3	11	86	8	60	2	19	0	78	0.86
20292688--20292721	11	3.1	11	91	8	52	8	35	0	55	1.31
20312070--20312136	26	2.6	26	72	13	66	29	20	20	28	1.98
20313353--20313412	22	2.6	22	82	10	68	15	6	6	71	1.28
20315602--20315675	37	2.0	38	86	2	105	32	24	18	24	1.97
20327851--20327894	23	2.0	22	86	4	61	45	15	0	38	1.47
20335518--20335579	17	3.6	18	82	10	67	50	11	16	22	1.76
20350080--20350136	24	2.4	24	87	0	78	47	12	5	35	1.64
20350155--20350231	36	2.2	35	88	2	109	27	14	12	45	1.81
20351587--20351611	13	1.9	13	100	0	50	56	24	0	20	1.43
20351892--20351931	22	2.0	20	85	14	55	40	12	12	35	1.81
20352277--20352309	17	1.9	17	93	0	57	27	0	0	72	0.85
20352348--20352374	14	1.9	14	100	0	54	33	37	7	22	1.82
20352594--20352632	18	2.2	18	90	0	60	51	7	12	28	1.67
20354446--20354477	16	1.9	17	93	6	57	37	6	0	56	1.25
20363617--20363672	16	3.3	16	77	20	60	55	3	3	37	1.35
20365048--20365093	15	3.1	15	80	0	56	80	0	2	17	0.81
20365050--20365095	19	2.4	19	88	0	65	82	0	2	15	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20369096--20369140	21	2.1	21	87	0	63	31	11	17	40	1.85
20370680--20370718	16	2.5	15	80	19	53	79	2	5	12	1.00
20371464--20371493	14	2.1	14	93	0	51	73	3	6	16	1.18
20372153--20372207	26	2.1	26	83	6	67	47	0	0	52	1.00
20375650--20375706	21	2.7	21	91	0	87	35	21	15	28	1.94
20380939--20380983	18	2.5	18	92	0	72	37	20	11	31	1.87
20381588--20381643	16	3.3	16	79	20	69	53	5	3	37	1.41
20381769--20381871	5	20.4	5	69	20	63	32	5	2	59	1.36
20382986--20383044	27	2.2	27	88	8	86	45	0	0	54	0.99
20383787--20383818	5	6.4	5	100	0	64	40	18	18	21	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120