genome.fa.s5.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  28  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7337877--7337999	30	4.2	28	76	13	95	33	2	24	39	1.68
7340297--7340332	18	2.0	18	88	0	54	25	13	30	30	1.94
7340388--7340474	27	3.1	29	79	11	92	34	1	8	56	1.36
7340423--7340477	16	3.4	16	82	5	74	41	0	3	54	1.18
7340418--7340485	33	2.1	33	88	0	100	36	0	7	55	1.28
7341331--7341356	13	2.0	13	100	0	52	53	0	0	46	1.00
7348982--7349772	92	8.7	92	93	3	1356	31	15	18	33	1.92
7348982--7349758	265	2.9	265	94	2	1331	31	14	19	33	1.92
7349538--7349700	52	3.4	51	65	23	134	33	15	17	33	1.92
7350410--7350461	16	3.2	16	86	0	77	44	0	1	53	1.11
7352445--7352614	30	5.7	27	80	9	115	37	28	2	31	1.72
7352445--7352596	30	5.1	29	82	7	171	34	28	3	32	1.74
7354034--7354088	27	2.0	27	96	0	101	50	7	16	25	1.70
7354367--7354522	7	23.4	7	90	6	195	14	9	0	75	1.07
7355431--7355490	14	4.5	13	72	19	52	76	0	11	11	1.02
7355445--7355496	27	1.9	26	84	7	68	76	0	13	9	1.01
7369619--7369657	18	2.2	18	90	9	62	43	0	0	56	0.99
7374244--7374285	17	2.3	19	88	8	61	66	4	0	28	1.12
7375045--7375201	43	3.7	43	72	10	131	35	23	10	30	1.88
7378099--7378138	20	2.0	20	100	0	80	60	10	10	20	1.57
7384391--7384425	14	2.5	14	95	0	61	85	2	11	0	0.69
7385857--7386133	49	5.7	48	80	11	221	39	16	23	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7385906--7386133	98	2.4	98	86	4	304	38	16	24	20	1.92
7386246--7386803	188	3.0	186	83	4	683	32	16	25	25	1.96
7389570--7389610	21	2.0	21	86	9	59	48	4	0	46	1.23
7389917--7389955	18	2.1	18	85	4	51	61	0	15	23	1.33
7390013--7390043	16	2.0	16	93	6	55	19	0	61	19	1.35
7390279--7390313	16	2.2	16	100	0	70	31	25	11	31	1.91
7395639--7395667	14	2.1	14	100	0	58	34	13	27	24	1.93
7397209--7397250	22	1.9	22	95	0	75	50	0	23	26	1.50
7399542--7399578	19	2.0	19	89	5	58	56	16	16	10	1.66
7403430--7403501	36	2.0	36	86	0	99	48	15	11	25	1.77
7403557--7403670	37	3.2	37	63	16	94	36	28	7	27	1.83
7403542--7403685	71	2.0	71	97	0	270	34	30	6	27	1.83
7405332--7405409	30	2.6	30	87	4	113	34	5	6	53	1.48
7409913--7409945	18	1.9	18	88	11	52	33	6	12	48	1.65
7409962--7410150	100	1.9	99	87	7	276	30	19	15	34	1.93
7410523--7410756	61	3.8	61	86	1	317	32	14	21	32	1.93
7410523--7410791	122	2.2	120	84	4	344	32	15	21	30	1.95
7410523--7410821	121	2.5	119	82	8	311	33	15	20	30	1.94
7410828--7410989	55	2.8	57	77	10	177	32	15	22	29	1.95
7414218--7414670	29	15.6	28	72	13	274	35	3	26	34	1.74
7414232--7414670	59	7.5	58	77	8	340	35	3	26	34	1.73
7414218--7414665	58	7.7	58	79	10	341	35	3	25	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7416223--7416313	6	15.8	6	73	8	73	53	2	0	43	1.12
7416223--7416331	17	6.4	17	81	5	130	53	2	0	44	1.15
7416254--7416303	11	4.3	12	73	19	52	54	4	0	42	1.19
7416241--7416286	23	2.0	24	86	4	67	52	2	0	45	1.13
7416225--7416280	29	1.9	29	85	7	78	53	1	0	44	1.11
7416223--7416286	29	2.2	29	77	5	76	51	1	0	46	1.10
7416254--7416303	23	2.2	23	89	7	75	54	4	0	42	1.19
7416635--7416814	91	2.0	91	88	2	272	17	12	26	42	1.85
7418720--7418986	30	9.0	29	81	8	231	40	1	23	33	1.66
7418747--7418986	59	4.1	58	81	10	229	40	1	22	35	1.64
7419735--7419786	3	17.7	3	96	4	97	32	0	0	67	0.91
7421346--7422663	704	1.9	676	87	5	1922	35	12	12	39	1.81
7423549--7423592	23	1.9	23	90	0	70	43	6	2	47	1.42
7425425--7425491	35	1.9	35	87	0	98	25	16	16	41	1.88
7429413--7429467	24	2.3	24	90	0	83	27	12	10	49	1.74
7431397--7431459	24	2.6	24	84	0	81	26	14	7	50	1.70
7436846--7436884	17	2.3	17	86	0	51	15	10	25	48	1.76
7441109--7441168	9	6.6	9	77	11	50	31	1	6	60	1.33
7441109--7441168	18	3.3	18	76	19	61	31	1	6	60	1.33
7441654--7441695	22	2.0	21	85	4	57	35	2	4	57	1.33
7441668--7441709	16	2.6	16	78	14	50	45	0	4	50	1.23
7442768--7442866	20	5.3	19	72	16	55	42	1	3	53	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7442773--7442821	25	2.0	25	92	8	82	46	0	4	48	1.20
7442789--7442873	20	4.2	20	76	11	77	41	1	3	54	1.25
7447238--7447289	24	2.2	24	85	0	68	53	5	3	36	1.43
7448180--7448224	20	2.2	20	84	7	56	20	0	4	75	0.97
7449487--7449640	70	2.2	70	91	3	247	37	19	12	29	1.89
7450563--7450616	28	1.9	28	84	0	72	29	11	27	31	1.91
7450608--7450699	28	3.2	29	79	13	93	51	3	15	30	1.59
7450652--7450937	117	2.4	118	87	2	425	41	6	22	29	1.80
7450597--7450964	117	3.2	116	82	8	419	41	5	21	30	1.76
7450592--7450936	59	5.9	59	83	6	373	41	6	21	30	1.78
7450922--7451229	29	10.5	29	77	5	235	37	2	22	37	1.69
7450802--7451219	59	7.1	58	78	6	251	37	4	22	35	1.75
7450652--7451137	117	4.2	117	79	9	358	39	5	22	32	1.77
7450716--7451137	58	7.2	59	81	6	303	38	5	22	33	1.77
7450922--7451230	30	10.5	30	75	9	151	37	2	22	37	1.69
7452121--7452165	21	2.1	21	84	8	56	20	11	8	60	1.57
7452121--7452165	22	2.1	21	87	4	63	20	11	8	60	1.57
7453161--7453208	18	2.7	18	87	9	71	52	2	2	43	1.24
7453199--7453243	17	2.6	18	85	3	65	53	0	4	42	1.21
7459900--7460003	36	2.9	36	92	0	181	28	12	23	35	1.91
7463645--7463678	17	1.9	18	94	5	61	29	0	14	55	1.40
7470251--7470279	14	2.1	14	100	0	58	34	13	27	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7471973--7472061	44	2.0	44	95	0	160	28	11	15	44	1.81
7475414--7475462	23	2.1	23	100	0	98	42	26	4	26	1.73
7475943--7475983	17	2.4	18	84	15	52	48	14	12	24	1.78
7476578--7476622	19	2.3	20	84	3	56	73	6	0	20	1.05
7480496--7480558	3	20.7	3	80	9	74	65	0	4	30	1.13
7486944--7487024	29	2.8	28	75	7	83	39	16	4	39	1.70
7500730--7500759	13	2.3	13	100	0	60	26	0	13	60	1.34
7501047--7501105	3	19.7	3	96	0	91	72	0	27	0	0.84
7504489--7504565	29	2.7	29	85	4	102	33	18	12	35	1.89
7504489--7504576	29	3.0	29	83	6	88	37	15	12	34	1.86
7506882--7506932	20	2.6	19	82	14	59	21	29	13	35	1.92
7507685--7507733	23	2.1	24	81	11	57	26	22	0	51	1.49
7511095--7511281	94	2.0	94	89	0	284	28	16	23	31	1.96
7511869--7511909	7	5.7	7	82	5	55	41	0	2	56	1.13
7511884--7511948	28	2.4	26	90	7	103	36	1	4	56	1.29
7513666--7513904	29	8.2	29	79	7	200	35	25	3	35	1.74
7513668--7513908	58	4.1	58	79	6	227	36	24	3	35	1.74
7513669--7513869	87	2.3	87	87	5	280	36	24	3	35	1.73
7513669--7513904	87	2.7	86	81	7	269	36	25	3	35	1.74
7514054--7514088	14	2.4	14	90	4	52	22	5	2	68	1.24
7525885--7526147	78	3.4	78	84	4	334	24	30	18	26	1.98
7525957--7526192	39	6.1	39	72	11	139	23	30	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7526740--7526842	6	18.0	6	68	17	60	47	1	0	49	1.19
7526778--7526819	17	2.5	17	88	0	57	45	4	0	50	1.23
7527453--7527501	27	1.9	24	84	12	62	59	2	0	38	1.09
7528547--7528755	29	7.2	29	76	11	117	35	26	3	33	1.75
7528625--7528734	58	1.9	57	83	7	141	33	24	5	36	1.79
7528892--7528926	14	2.4	14	90	4	52	22	5	0	71	1.07
7535563--7535618	29	1.9	29	100	0	112	21	5	51	21	1.67
7539575--7539632	20	2.8	20	84	7	73	56	1	0	41	1.09
7539558--7539638	21	3.7	21	75	20	69	56	2	0	40	1.12
7539690--7539721	10	2.8	12	81	18	50	40	0	9	50	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120