genome.fa.s5.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  40  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10778139--10778172	16	2.2	15	89	5	50	55	2	0	41	1.15
10782728--10782845	55	2.1	55	93	0	200	22	32	22	22	1.98
10782728--10782859	55	2.4	55	89	0	192	23	31	21	23	1.99
10791172--10791517	37	9.4	37	85	4	412	34	25	12	28	1.92
10791172--10791517	74	4.7	74	85	1	469	34	25	12	28	1.92
10791172--10791517	111	3.1	111	86	0	496	34	25	12	28	1.92
10795350--10795391	20	2.1	20	100	0	84	52	4	28	14	1.62
10795478--10795638	80	2.0	80	95	0	286	26	17	20	35	1.95
10804014--10804167	80	1.9	80	95	0	281	35	20	16	27	1.95
10805305--10805465	80	2.0	80	93	0	277	35	20	16	27	1.94
10805565--10805589	9	2.8	9	100	0	50	12	12	12	64	1.51
10813164--10813203	17	2.4	16	80	8	53	37	20	15	27	1.92
10819037--10819091	29	1.9	29	85	10	78	30	9	23	36	1.86
10826758--10826787	12	2.6	11	90	10	51	53	36	0	10	1.35
10837849--10837873	3	8.3	3	100	0	50	68	0	0	32	0.90
10843642--10843674	16	2.0	17	88	5	50	18	6	6	69	1.30
10844052--10844093	9	4.9	9	80	8	52	45	0	2	52	1.13
10851226--10851289	30	2.1	30	82	5	76	40	15	1	42	1.57
10852282--10852337	25	2.2	26	87	6	80	41	0	1	57	1.09
10852303--10852338	18	2.1	18	89	5	56	41	0	2	55	1.14
10857285--10857311	3	9.0	3	100	0	54	66	0	0	33	0.92
10859138--10859208	28	2.4	29	81	11	74	49	0	11	39	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10874865--10874900	11	3.3	11	92	7	56	75	0	25	0	0.81
10874867--10874899	14	2.4	14	90	10	50	72	0	27	0	0.85
10875815--10875844	15	2.1	14	93	6	51	0	20	0	80	0.72
10877753--10877865	47	2.4	47	86	0	154	35	19	12	32	1.89
10881821--10881959	60	2.3	59	88	2	197	35	27	7	28	1.85
10881821--10881959	30	4.6	30	73	7	122	35	27	7	28	1.85
10883915--10883950	18	2.0	18	100	0	72	22	27	16	33	1.95
10888025--10888385	99	3.7	98	81	6	374	36	16	28	18	1.93
10888150--10888332	50	3.7	50	71	12	128	36	14	30	19	1.91
10888197--10888410	49	4.3	50	73	10	172	35	14	28	21	1.93
10888392--10888545	49	3.2	49	76	6	120	34	18	25	22	1.96
10888578--10889478	42	22.4	41	79	7	573	28	26	18	26	1.98
10888737--10889478	42	18.3	42	80	7	818	28	25	18	26	1.98
10888578--10889478	243	3.7	244	81	7	955	28	26	18	26	1.98
10888737--10889478	80	9.1	81	80	5	745	28	25	18	26	1.98
10888613--10889457	80	10.5	79	78	11	410	28	25	19	26	1.98
10891129--10891323	30	6.5	29	75	12	162	36	25	6	31	1.81
10891131--10891323	60	3.2	60	78	4	219	37	25	6	31	1.81
10891138--10891303	90	1.8	90	88	5	255	36	24	6	32	1.81
10891121--10891323	90	2.3	90	82	3	248	36	25	5	31	1.80
10900175--10900205	12	2.6	12	100	0	62	38	16	29	16	1.90
10904446--10904473	7	4.0	7	100	0	56	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10908285--10908329	10	4.3	10	83	10	63	0	22	0	77	0.76
10908285--10908328	16	2.8	16	80	19	56	0	22	0	77	0.77
10909446--10909479	3	11.3	3	87	12	52	0	35	0	64	0.94
10909442--10909478	12	3.2	12	85	14	51	0	32	0	67	0.91
10924429--10924477	13	3.9	13	76	17	50	0	6	20	73	1.04
10926636--10926710	37	2.1	35	87	5	105	25	13	13	48	1.79
10926671--10926745	23	3.3	23	69	14	64	24	12	17	46	1.81
10926983--10927011	12	2.4	12	100	0	58	6	13	24	55	1.63
10936949--10936986	17	2.2	17	86	9	51	15	18	15	50	1.79
10937570--10937609	6	6.5	6	82	5	53	75	0	20	5	0.99
10954695--10954730	18	2.0	18	88	0	54	11	22	19	47	1.80
10958486--10958561	11	6.8	11	70	24	52	53	1	1	43	1.17
10958492--10958561	37	1.9	35	83	13	88	54	1	1	42	1.18
10961020--10961314	150	2.0	149	88	2	439	23	24	23	28	1.99
10963256--10963305	24	2.0	26	88	7	77	36	14	8	42	1.74
10963510--10963610	31	3.2	32	70	12	84	54	5	0	38	1.32
10963700--10963730	9	3.3	9	95	4	53	41	0	0	58	0.98
10970465--10970513	22	2.2	22	78	7	55	65	6	0	28	1.16
10977923--10977999	36	2.2	36	90	2	129	44	12	15	27	1.83
10979203--10979303	24	4.2	24	82	3	114	32	24	20	21	1.98
10980848--10980960	56	2.1	56	86	3	158	23	23	1	50	1.59
10982024--10982199	56	3.2	56	89	4	259	48	1	28	21	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10982495--10982531	18	2.1	18	89	0	56	24	13	8	54	1.66
10987237--10987293	24	2.4	24	84	0	69	35	7	12	45	1.69
10993933--10993998	34	1.9	34	87	0	96	48	9	22	19	1.77
11027328--11027462	60	2.2	60	100	0	270	29	10	16	43	1.81
11033892--11033939	24	1.9	26	87	8	73	52	8	16	22	1.71
11035288--11035334	10	4.6	10	82	12	60	68	6	0	25	1.13
11035409--11035433	11	2.3	11	100	0	50	56	8	0	36	1.29
11035456--11035519	9	7.0	9	75	20	53	29	3	1	65	1.17
11035451--11035497	21	2.3	22	75	17	57	31	2	2	63	1.18
11035477--11035519	17	2.6	16	81	7	50	30	2	0	67	1.03
11038929--11038977	21	2.4	21	93	3	82	22	24	8	44	1.79
11039288--11039339	27	1.9	27	84	7	70	34	3	0	61	1.14
11040260--11040297	14	2.8	14	88	4	51	21	7	0	71	1.11
11041401--11041445	16	2.7	17	80	13	58	57	4	0	37	1.19
11041589--11041774	18	10.7	17	69	19	84	70	4	2	22	1.18
11041595--11041745	4	38.2	4	68	22	72	71	3	2	21	1.15
11041616--11041728	10	12.3	9	69	22	67	72	2	3	21	1.12
11041595--11041719	44	2.9	44	75	13	116	72	4	3	20	1.16
11041597--11041728	22	5.8	21	73	16	70	72	3	3	20	1.13
11042068--11042448	97	3.8	97	75	6	293	23	21	19	35	1.96
11042089--11042448	197	1.8	198	82	4	467	23	21	18	35	1.95
11044012--11044368	26	14.2	26	70	14	196	33	17	28	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11044033--11044445	50	8.3	50	83	1	506	31	17	29	21	1.96
11044025--11044390	24	14.7	23	69	14	140	32	17	29	20	1.96
11047430--11047470	18	2.2	19	83	12	50	26	12	21	39	1.89
11047775--11047814	21	2.0	21	85	5	55	22	15	15	47	1.82
11051462--11051632	51	3.4	51	90	1	263	30	22	12	33	1.92
11054669--11054887	51	4.3	51	88	5	316	28	23	15	32	1.95
11065331--11065389	15	3.9	15	72	14	50	62	1	35	0	1.05
11065793--11065839	17	2.7	18	83	9	62	25	14	4	55	1.58
11069298--11069380	43	1.9	43	97	0	157	26	4	27	40	1.76
11072626--11072705	26	3.2	26	67	13	76	35	16	28	20	1.94
11072518--11072701	50	3.7	50	82	2	235	34	15	28	22	1.94
11075490--11075558	32	2.2	32	97	0	129	20	18	5	55	1.63
11085015--11085055	17	2.4	18	80	19	52	14	17	17	51	1.77
11093703--11093754	10	5.4	10	77	9	63	78	1	17	1	0.93
11093704--11093754	18	2.7	19	84	6	59	80	1	15	1	0.89
11095238--11095321	24	3.4	24	73	12	80	32	17	29	20	1.96
11095236--11095345	50	2.2	50	90	0	166	34	18	27	20	1.95
11095253--11095335	26	3.3	26	68	13	73	32	18	27	21	1.96
11096449--11096547	52	1.9	52	85	4	137	55	9	13	22	1.65
11102132--11102196	25	2.6	24	76	11	60	9	15	0	75	1.04
11104751--11104876	22	5.9	21	65	15	62	74	3	4	17	1.12
11104750--11104890	5	28.0	5	68	18	64	73	2	5	17	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11104860--11104902	21	2.0	22	86	4	61	74	0	6	18	1.04
11116720--11116770	21	2.3	23	83	13	70	72	7	1	17	1.18
11116698--11116762	26	2.4	28	80	12	73	70	6	1	21	1.17
11116775--11116858	7	13.0	7	68	26	53	71	1	2	25	1.05
11116775--11116859	4	23.0	4	72	20	69	71	1	2	24	1.04
11116646--11116860	18	12.1	17	68	19	93	68	4	4	22	1.24
11116716--11116850	11	12.5	10	72	21	96	71	2	2	22	1.14
11116879--11116967	32	2.8	32	71	19	78	58	4	14	22	1.54
11119797--11119849	25	2.1	25	85	0	70	22	20	18	37	1.94
11119847--11119945	26	3.8	26	87	0	126	29	21	19	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120