genome.fa.s5.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  61  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18010022--18010074	11	4.8	11	80	0	61	16	28	26	28	1.97
18015716--18015890	87	2.0	87	98	0	341	30	13	12	44	1.80
18016960--18017003	22	2.0	22	100	0	88	45	18	0	36	1.49
18017452--18017477	12	2.2	12	100	0	52	7	0	7	84	0.77
18020774--18023122	838	2.8	837	81	6	2603	35	15	12	36	1.85
18023801--18023915	54	2.1	54	83	3	142	32	11	13	42	1.80
18027083--18027267	94	1.9	100	83	8	249	39	10	11	38	1.76
18030214--18030265	24	2.2	24	85	0	68	53	9	3	32	1.51
18031841--18031894	29	1.9	28	85	14	76	24	18	3	53	1.60
18031845--18031907	29	2.1	29	82	8	74	33	19	3	44	1.66
18034295--18034332	19	2.0	19	89	0	58	39	18	5	36	1.73
18034549--18034591	18	2.3	20	80	15	56	51	11	0	37	1.39
18036136--18036174	17	2.4	17	87	12	55	74	0	2	23	0.94
18036091--18036171	41	2.0	40	81	13	94	64	1	2	32	1.15
18040470--18040508	2	19.5	2	100	0	78	0	0	48	51	1.00
18040638--18040780	65	2.2	66	83	6	184	32	0	19	48	1.49
18040946--18040978	2	16.5	2	93	0	57	48	3	0	48	1.17
18046145--18046176	17	1.9	17	93	6	57	65	0	0	34	0.93
18049153--18049204	26	1.9	28	88	7	81	48	1	0	50	1.12
18052952--18052986	18	1.9	18	94	0	61	28	0	5	65	1.15
18056217--18056251	17	2.1	17	88	0	52	45	2	0	51	1.16
18074459--18074497	17	2.3	17	90	0	60	15	12	25	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18077629--18077669	20	2.1	19	90	4	64	63	0	0	36	0.95
18078655--18078954	29	10.1	29	83	6	250	36	26	2	35	1.69
18078648--18078948	30	10.1	30	79	9	217	35	25	2	36	1.69
18078661--18078966	60	5.2	59	79	8	266	34	25	2	36	1.71
18089598--18089718	39	3.1	39	73	15	131	21	29	21	27	1.98
18089583--18089766	79	2.3	78	86	1	251	23	31	19	25	1.98
18089622--18089945	39	8.3	39	73	9	248	24	31	18	25	1.97
18089738--18089974	77	3.1	78	83	3	280	24	31	19	24	1.98
18089622--18089921	116	2.6	117	84	1	341	24	31	19	25	1.98
18091055--18091095	20	2.1	19	90	4	64	63	0	0	36	0.95
18091818--18092190	30	12.5	30	75	6	256	34	23	3	39	1.72
18091818--18092157	59	5.7	60	77	5	278	34	22	3	39	1.72
18092034--18092133	29	3.4	28	74	9	83	35	24	3	38	1.71
18098411--18098458	24	2.0	24	100	0	96	29	25	20	25	1.99
18101324--18101363	17	2.4	17	79	12	55	5	27	5	62	1.37
18103552--18103585	17	1.9	18	88	5	52	29	5	26	38	1.80
18113298--18113459	40	4.1	40	85	1	209	28	18	30	22	1.97
18143120--18143166	13	3.5	13	78	16	60	34	10	2	53	1.48
18148621--18148745	45	2.8	45	86	0	169	23	23	15	38	1.92
18166544--18166769	110	2.1	110	95	1	409	37	10	23	28	1.88
18169544--18169601	27	2.1	27	96	0	107	29	5	13	51	1.63
18175907--18175963	21	2.7	21	75	0	60	31	15	22	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18183715--18183761	16	2.8	17	80	9	60	53	2	2	42	1.25
18184351--18184394	21	2.1	21	83	8	54	59	0	6	34	1.24
18187399--18187441	20	2.1	20	82	4	50	34	0	13	51	1.42
18189464--18189520	30	1.9	30	88	0	87	24	7	12	56	1.61
18195942--18195976	18	1.9	18	94	0	61	20	42	14	22	1.88
18197902--18198025	62	2.0	62	91	0	203	28	20	13	37	1.90
18201533--18201563	5	6.2	5	92	0	53	19	0	77	3	0.90
18201564--18201602	21	1.9	21	84	5	53	43	0	30	25	1.55
18221390--18221439	21	2.4	21	86	6	66	36	28	12	24	1.91
18222151--18222243	28	3.0	28	73	21	96	23	25	15	35	1.94
18222741--18222791	3	17.0	3	100	0	102	66	0	33	0	0.92
18222869--18222904	10	3.8	9	92	3	54	44	11	2	41	1.54
18225462--18225544	28	3.0	28	87	5	107	20	13	20	45	1.84
18226785--18226951	28	6.0	27	74	20	121	32	23	17	26	1.97
18229583--18229653	30	2.4	30	87	0	97	15	18	26	39	1.90
18233523--18233560	12	2.9	13	80	11	51	65	2	13	18	1.37
18234992--18235077	28	3.1	28	86	3	111	46	15	15	23	1.83
18239666--18239704	18	2.2	18	95	0	69	35	20	12	30	1.90
18247777--18247902	45	2.8	45	86	2	182	42	17	7	33	1.77
18248436--18248476	22	1.9	22	95	5	75	24	7	0	68	1.15
18254661--18254691	13	2.4	13	100	0	62	48	22	16	12	1.80
18262627--18262652	8	3.2	8	100	0	52	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18267189--18267224	15	2.5	14	91	8	63	19	0	2	77	0.88
18267982--18268032	8	6.7	7	76	24	50	29	3	0	66	1.09
18268000--18268036	8	4.3	9	80	13	51	29	2	0	67	1.04
18267982--18268032	16	3.3	15	84	10	59	29	3	0	66	1.09
18267998--18268047	25	2.0	25	88	4	73	32	2	2	64	1.16
18267995--18268054	26	2.4	24	83	10	75	33	1	1	63	1.14
18268924--18268958	18	1.9	18	88	0	52	54	8	22	14	1.67
18273985--18274026	18	2.3	18	84	8	50	16	33	2	47	1.60
18281479--18281526	12	4.0	12	80	0	60	25	14	18	41	1.88
18281482--18281538	24	2.4	24	88	8	89	21	15	17	45	1.85
18281494--18281539	12	3.8	12	75	18	51	17	15	17	50	1.79
18281624--18281693	23	3.0	23	78	2	77	28	10	17	44	1.81
18281659--18282144	242	2.0	242	99	0	954	45	12	12	29	1.80
18282149--18282192	21	2.0	22	86	4	63	50	11	0	38	1.39
18282425--18282498	22	3.4	22	90	3	114	18	43	17	20	1.88
18283531--18283612	11	7.4	11	69	10	51	24	2	2	70	1.11
18283540--18283582	15	2.9	15	85	0	50	20	2	4	72	1.14
18283550--18283612	17	3.8	17	74	12	60	23	3	3	69	1.17
18283517--18283612	22	4.3	21	73	21	63	26	2	2	69	1.10
18283830--18283894	29	2.4	28	80	14	73	32	4	6	56	1.44
18286532--18286571	21	1.9	21	90	10	64	42	0	12	45	1.42
18288588--18288876	52	5.6	52	84	2	368	25	14	22	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18288588--18288820	103	2.3	103	86	3	326	27	14	22	36	1.92
18298856--18298895	18	2.4	16	81	18	55	70	0	22	7	1.12
18298860--18298894	18	1.9	18	94	0	61	71	0	20	8	1.11
18298979--18299067	28	3.2	28	83	0	106	32	20	19	28	1.96
18309941--18310009	21	3.5	21	66	22	67	44	0	2	52	1.16
18309931--18310010	38	2.1	39	95	2	144	46	0	2	51	1.14
18311078--18311156	37	2.1	39	92	4	135	53	2	0	44	1.14
18311078--18311156	39	2.1	37	88	9	115	53	2	0	44	1.14
18324444--18324567	33	3.8	33	72	7	108	32	32	11	24	1.90
18324684--18324801	53	2.2	53	92	0	191	39	19	11	28	1.87
18326742--18326839	51	1.9	51	85	0	133	33	23	12	30	1.91
18326818--18326861	22	2.0	22	86	0	61	43	15	4	36	1.68
18327169--18327273	52	2.1	51	92	3	176	34	19	3	42	1.69
18333924--18334053	51	2.5	51	96	0	242	33	24	14	26	1.94
18337325--18337455	23	5.7	23	71	6	68	29	13	17	38	1.88
18337352--18337453	46	2.2	46	91	0	159	32	11	18	37	1.87
18337378--18337460	23	3.7	23	73	13	82	34	12	16	36	1.86
18339866--18340093	94	2.4	94	87	0	330	31	24	17	26	1.97
18347949--18348011	18	3.8	16	78	16	65	63	0	0	36	0.95
18351450--18351520	15	4.6	15	72	16	56	49	1	1	47	1.18
18355054--18355099	15	3.1	15	77	22	53	54	6	4	34	1.46
18357238--18357428	90	2.1	90	98	0	364	30	27	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18357943--18357977	15	2.3	15	90	0	52	28	57	5	8	1.52
18367214--18367247	15	2.2	16	89	5	52	44	20	2	32	1.67
18378532--18378622	45	2.0	45	95	0	164	38	7	16	37	1.77
18378976--18379009	15	2.4	14	90	5	50	26	2	11	58	1.47
18382974--18383032	23	2.6	23	97	2	111	42	13	6	37	1.71
18383809--18383847	20	2.0	20	84	0	51	46	2	12	38	1.56
18388282--18388377	46	2.1	46	98	0	183	30	2	23	43	1.65
18393830--18393871	21	2.0	22	90	4	68	40	2	2	54	1.26
18395202--18395232	3	10.3	3	100	0	62	32	0	0	67	0.91
18405035--18405090	28	2.0	28	96	0	103	23	14	19	42	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120