genome.fa.s5.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  38  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9925264--9925296	17	1.9	17	88	11	50	48	6	33	12	1.65
9926222--9926277	23	2.5	21	78	21	60	58	12	3	25	1.50
9926336--9926382	3	16.3	3	82	8	62	68	4	0	27	1.08
9927457--9927552	7	13.9	7	77	2	86	35	21	22	19	1.96
9927443--9927552	41	2.7	41	85	4	141	37	20	21	20	1.95
9927471--9927522	27	1.9	27	84	0	68	38	23	19	19	1.93
9927464--9927529	34	1.9	34	84	0	87	36	22	21	19	1.95
9931022--9931067	17	2.7	17	89	0	74	52	26	4	17	1.63
9936136--9936184	20	2.4	21	83	13	66	42	2	2	53	1.24
9936222--9936285	12	5.2	12	69	23	53	45	1	0	53	1.10
9936200--9936281	38	2.2	37	78	10	87	45	2	1	51	1.22
9938593--9938804	52	4.1	51	84	3	262	33	23	14	28	1.94
9951790--9951849	31	1.9	31	100	0	120	41	3	23	31	1.71
9952293--9952330	20	1.9	20	84	10	51	44	7	0	47	1.32
9954268--9954441	67	2.6	66	89	8	266	52	5	0	42	1.23
9954992--9955440	40	11.3	40	78	5	444	22	20	27	30	1.98
9954973--9955440	79	5.9	79	88	2	618	22	19	27	30	1.98
9955428--9955603	50	3.6	49	80	6	169	20	26	18	34	1.95
9960830--9961005	24	7.3	24	92	0	262	29	23	20	26	1.99
9964014--9964093	31	2.7	29	86	7	99	41	13	16	28	1.86
9966495--9966523	13	2.2	13	100	0	58	13	0	20	65	1.26
9966525--9966701	71	2.7	63	83	13	246	53	4	0	41	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9966545--9966705	71	2.3	71	92	2	263	56	4	0	38	1.24
9967431--9967494	29	2.2	30	94	2	112	57	15	3	23	1.52
9975162--9975220	24	2.5	24	81	10	59	37	5	0	57	1.21
9975194--9975339	58	2.5	58	82	8	181	45	2	0	51	1.17
9975509--9975548	16	2.5	16	95	0	71	27	27	7	37	1.84
9976872--9976912	10	4.3	10	87	9	50	31	0	0	68	0.90
9976872--9976912	19	2.2	19	86	4	57	31	0	0	68	0.90
9980375--9980419	22	2.0	22	82	0	54	15	24	31	28	1.96
9981353--9981377	2	12.5	2	100	0	50	48	0	0	52	1.00
10000725--10000927	42	4.8	42	80	4	149	30	18	25	26	1.98
10000682--10001004	85	3.8	85	80	7	316	31	17	24	26	1.97
10000680--10001004	43	7.6	43	81	4	316	31	17	24	26	1.97
10001125--10001149	13	1.9	13	100	0	50	56	4	0	40	1.18
10001420--10001456	11	3.3	11	88	7	56	62	10	2	24	1.41
10001488--10001527	19	2.3	19	87	12	59	42	0	2	55	1.13
10001780--10001837	29	2.0	29	86	0	80	51	0	0	48	1.00
10001821--10001854	17	2.0	17	88	0	50	23	0	0	76	0.79
10004145--10004198	28	1.9	28	84	0	72	37	1	3	57	1.27
10005120--10005174	19	2.8	20	76	15	62	67	0	3	29	1.08
10005518--10005556	21	1.9	20	94	5	69	33	2	5	58	1.33
10007562--10007604	23	1.9	23	90	4	70	41	6	0	51	1.29
10013888--10014007	39	3.1	39	86	0	150	30	18	15	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10014691--10014746	28	2.0	28	82	6	69	51	3	0	44	1.18
10014706--10014768	29	2.2	29	86	8	85	39	1	0	58	1.07
10014959--10014999	3	13.7	3	100	0	82	65	0	0	34	0.93
10022671--10022918	119	2.1	119	82	7	290	36	28	2	32	1.72
10022665--10022932	29	9.0	29	75	14	183	36	29	2	31	1.71
10024069--10024290	121	1.8	120	91	3	365	36	9	6	47	1.60
10030512--10030566	24	2.2	25	78	9	60	45	3	7	43	1.49
10032010--10032088	31	2.6	30	83	4	86	29	8	10	51	1.65
10032314--10032426	59	1.9	60	85	1	156	55	5	10	28	1.55
10035177--10035217	20	2.0	21	85	4	57	36	4	14	43	1.67
10060991--10061044	21	2.6	21	85	5	74	31	27	14	25	1.95
10061199--10061238	21	1.9	21	84	0	53	32	17	17	32	1.93
10069740--10069874	68	2.0	69	86	1	191	40	2	5	51	1.39
10071342--10071373	8	4.0	8	100	0	64	37	0	37	25	1.56
10072858--10072995	49	2.8	49	90	2	206	27	3	28	40	1.73
10073378--10073418	20	1.9	22	85	14	59	58	0	0	41	0.98
10073392--10073442	16	3.2	15	74	20	50	60	1	0	37	1.08
10073922--10073983	28	2.2	29	82	8	74	46	1	0	51	1.10
10079163--10079197	18	1.9	18	88	0	52	14	17	40	28	1.88
10085134--10085198	17	3.8	17	82	11	62	69	3	1	26	1.12
10085137--10085198	9	7.1	8	74	16	52	69	3	1	25	1.13
10085706--10085750	18	2.4	18	88	3	63	71	2	8	17	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10086540--10086621	39	2.2	37	77	14	89	43	2	4	48	1.37
10095446--10095480	18	1.9	18	88	11	54	5	14	0	80	0.89
10096524--10096588	32	2.0	32	87	0	94	29	7	44	18	1.77
10098224--10098410	51	3.6	51	86	6	236	30	22	15	31	1.95
10105420--10105607	51	3.7	50	81	5	191	31	20	14	32	1.93
10110302--10110328	14	1.9	14	100	0	54	22	14	11	51	1.73
10116646--10116700	26	2.1	26	80	12	60	18	16	5	60	1.55
10130782--10130808	14	1.9	14	100	0	54	14	7	3	74	1.18
10136241--10136278	15	2.6	15	80	19	53	18	13	5	63	1.48
10138116--10138153	3	12.3	3	88	5	58	68	0	28	2	1.03
10138598--10138642	19	2.4	19	88	0	63	15	11	13	60	1.60
10142269--10142328	27	2.2	28	88	8	88	35	5	10	50	1.58
10142279--10142329	13	3.9	13	76	16	52	37	5	9	47	1.61
10148594--10148661	20	3.5	20	73	17	61	45	10	0	44	1.38
10148465--10148958	143	3.5	141	81	9	567	43	9	3	43	1.53
10148618--10148724	52	2.1	51	82	8	128	52	9	2	35	1.48
10156676--10156732	16	3.5	16	83	11	71	28	3	0	68	1.06
10156692--10156751	26	2.4	24	83	10	75	31	1	1	65	1.13
10157621--10157662	21	2.0	21	85	0	57	47	11	28	11	1.76
10161940--10161982	18	2.4	18	92	0	68	32	25	16	25	1.96
10161940--10161995	18	3.1	18	84	5	51	32	26	17	23	1.97
10165837--10165901	22	2.9	23	84	6	80	43	24	23	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10173879--10173995	57	2.1	57	100	0	234	35	13	11	38	1.82
10190676--10190723	18	2.6	19	77	9	55	20	18	25	35	1.95
10198391--10198446	26	2.2	25	77	3	58	33	3	3	58	1.32
10199324--10199364	18	2.3	18	86	0	55	51	12	29	7	1.66
10205459--10205579	24	5.0	24	80	2	136	23	21	19	35	1.96
10206385--10206531	48	3.1	48	89	2	197	38	22	8	29	1.84
10206499--10206531	11	3.1	11	86	8	50	39	24	12	24	1.89
10211826--10211934	24	4.5	24	75	8	87	24	22	20	32	1.98
10214781--10214837	21	2.7	21	80	0	69	28	26	14	31	1.94
10219366--10219410	20	2.2	20	88	0	63	40	22	20	17	1.92
10229561--10229637	31	2.5	31	91	0	118	24	28	23	23	1.99
10229925--10229970	19	2.3	20	85	14	69	34	0	23	41	1.55
10229926--10229961	9	3.9	9	88	3	54	38	0	25	36	1.56
10231638--10231710	30	2.4	30	84	4	85	39	23	17	19	1.92
10231831--10231922	30	3.0	29	79	9	103	44	22	10	21	1.83
10232882--10232962	19	4.0	21	79	8	69	46	12	4	35	1.63
10234069--10234148	27	3.0	27	86	0	106	31	20	17	31	1.95
10234179--10234248	27	2.5	28	84	9	81	30	25	14	30	1.95
10241587--10241633	21	2.2	21	85	7	60	34	0	2	63	1.06
10250321--10250347	2	13.5	2	100	0	54	51	48	0	0	1.00
10261125--10261257	70	1.9	67	86	4	185	33	12	12	42	1.80
10262368--10262393	10	2.6	10	100	0	52	19	7	73	0	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10262404--10262455	26	2.0	25	92	3	86	42	1	0	55	1.10
10268766--10269504	42	17.5	42	81	3	793	22	17	23	36	1.95
10269910--10269961	3	17.3	3	88	7	79	32	3	0	63	1.12
10270745--10270790	24	2.0	23	82	4	56	58	2	2	36	1.22
10270388--10271029	148	4.4	146	82	8	707	43	4	8	43	1.55
10275724--10275755	4	8.0	4	92	0	55	46	0	28	25	1.53
10280312--10281117	149	5.4	151	83	6	950	45	8	2	43	1.49
10280295--10281022	297	2.4	295	84	6	959	44	8	2	43	1.49
10280771--10281013	52	4.7	52	70	11	169	46	8	2	42	1.47
10283284--10283339	2	28.0	2	100	0	112	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120