genome.fa.s5.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  112  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33239515--33239826	130	2.4	129	80	6	360	37	14	10	37	1.81
33243461--33243491	5	6.2	5	100	0	62	80	0	19	0	0.71
33252880--33253257	125	3.0	125	94	0	641	34	9	16	39	1.81
33255672--33255742	34	2.1	33	82	7	81	39	1	2	56	1.23
33257176--33258487	122	10.7	122	84	3	1614	30	17	17	33	1.94
33257176--33258487	245	5.3	245	87	3	1769	30	17	17	33	1.94
33258403--33258797	90	4.5	90	87	5	501	27	19	18	34	1.95
33258648--33258797	80	1.9	80	91	0	246	27	20	16	35	1.94
33266480--33266518	15	2.4	17	87	8	55	64	5	2	28	1.28
33267246--33267299	23	2.3	23	90	0	81	25	24	22	27	2.00
33268038--33268131	9	10.7	9	67	7	50	1	18	4	76	1.00
33269547--33269580	17	2.0	17	88	0	50	64	5	5	23	1.38
33270311--33270364	23	2.3	23	80	0	63	25	22	20	31	1.98
33276231--33276271	6	6.8	6	94	0	64	26	34	19	19	1.96
33282798--33282822	2	12.5	2	100	0	50	52	48	0	0	1.00
33286439--33286782	171	2.0	172	95	0	618	37	13	18	30	1.89
33298027--33298098	27	2.8	26	79	18	80	48	0	2	48	1.16
33298027--33298095	11	5.6	11	73	21	57	47	0	2	49	1.16
33298326--33298374	3	16.3	3	100	0	98	0	34	0	65	0.93
33299446--33299514	31	2.3	29	80	11	77	23	8	5	62	1.46
33305395--33305428	17	2.0	18	88	11	54	41	8	0	50	1.34
33307575--33307731	31	5.2	31	72	14	121	23	17	7	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33307537--33307731	88	2.2	87	90	4	302	24	16	7	51	1.69
33307678--33307751	31	2.4	31	83	0	103	29	17	6	45	1.74
33307537--33307754	88	2.5	88	87	3	242	25	15	7	51	1.69
33307595--33307805	88	2.4	88	83	4	237	26	17	9	47	1.77
33313316--33313361	2	21.0	2	83	16	56	45	0	8	45	1.34
33313316--33313365	7	7.4	7	97	2	86	46	0	10	44	1.37
33315339--33315377	19	2.1	19	90	0	60	56	0	2	41	1.13
33315524--33315577	21	2.5	22	80	14	67	46	1	5	46	1.37
33315705--33315755	22	2.5	21	81	9	61	33	1	3	60	1.26
33324249--33324287	20	1.9	20	84	5	51	46	12	15	25	1.81
33328800--33328856	30	1.9	29	92	3	96	42	0	0	57	0.98
33328795--33328874	29	2.7	30	83	12	103	40	0	0	60	0.97
33328880--33328913	9	3.6	10	88	11	54	50	0	0	50	1.00
33339382--33339437	26	2.4	22	85	11	67	48	3	0	48	1.19
33340056--33340110	24	2.3	23	79	14	58	47	0	1	50	1.11
33347476--33347521	19	2.5	20	75	13	53	63	6	2	28	1.31
33351886--33351920	18	2.0	17	88	5	52	31	11	37	20	1.88
33360586--33360643	23	2.5	23	100	0	116	29	12	36	22	1.90
33361521--33361562	17	2.5	17	82	17	52	61	0	0	38	0.96
33362519--33362667	59	2.5	59	83	4	192	46	12	16	24	1.81
33362561--33362667	31	3.6	30	72	16	105	46	10	15	27	1.78
33366686--33366728	18	2.4	19	80	7	54	62	6	2	27	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33371397--33371438	2	21.0	2	95	0	57	50	7	0	42	1.30
33373828--33373881	21	2.5	22	75	6	56	51	1	1	44	1.22
33381938--33381975	18	2.1	18	85	9	51	23	7	15	52	1.69
33382019--33382064	23	2.0	23	86	0	65	39	15	8	36	1.78
33384357--33384823	188	2.5	188	83	3	584	32	19	14	33	1.92
33388841--33388892	25	2.1	25	92	0	86	21	9	9	59	1.57
33395157--33395227	35	2.0	35	86	0	97	21	21	19	38	1.94
33397095--33397142	22	2.3	20	75	24	55	25	0	2	72	0.95
33398030--33398104	35	2.3	35	81	9	95	41	5	2	50	1.39
33399586--33399626	21	2.0	21	90	0	64	53	31	9	4	1.55
33411646--33411688	22	2.0	22	81	9	52	37	0	0	62	0.95
33411638--33411688	24	2.2	22	82	6	57	37	0	0	62	0.95
33413122--33414027	201	4.6	200	89	2	1366	34	19	12	33	1.89
33413122--33414027	401	2.3	397	90	3	1394	34	19	12	33	1.89
33425528--33425739	23	9.5	23	78	11	183	42	21	24	11	1.85
33425557--33425631	39	1.9	39	91	0	123	44	21	22	12	1.85
33425607--33425739	71	1.9	68	86	9	187	39	22	25	12	1.88
33430038--33430078	17	2.4	17	87	0	55	31	9	14	43	1.78
33435409--33435438	2	15.0	2	100	0	60	50	0	0	50	1.00
33435438--33435478	2	20.5	2	100	0	82	51	0	48	0	1.00
33440668--33440713	19	2.4	20	85	7	60	71	0	0	28	0.86
33445922--33445972	5	10.8	5	87	4	63	1	17	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33445924--33445987	32	2.0	31	84	3	83	3	14	1	81	0.89
33445945--33445986	22	1.9	22	85	0	57	4	9	2	83	0.88
33455515--33455555	12	3.7	12	75	18	52	12	39	0	48	1.41
33455515--33455563	21	2.3	21	96	0	89	14	34	0	51	1.43
33455729--33455758	13	2.4	12	94	5	51	70	10	0	20	1.16
33461723--33461763	21	2.0	21	85	0	55	51	12	7	29	1.66
33469362--33469476	60	1.9	61	83	5	153	36	7	18	37	1.80
33474621--33474655	3	11.7	3	100	0	70	65	0	0	34	0.93
33476597--33476731	66	2.0	66	98	0	261	40	8	19	31	1.82
33478549--33480594	151	13.5	150	86	4	2502	36	6	16	40	1.75
33478549--33480594	916	2.3	897	86	5	2778	36	6	16	40	1.75
33487619--33487696	29	2.6	29	82	10	77	34	1	8	55	1.40
33487876--33487916	21	2.0	21	85	0	55	43	17	9	29	1.80
33495676--33495716	3	13.7	3	89	0	55	29	2	34	34	1.71
33505938--33505970	16	2.0	17	88	5	50	66	3	0	30	1.06
33506083--33506117	9	3.8	9	88	3	52	51	2	0	45	1.16
33510214--33510262	16	3.1	16	79	5	55	40	2	26	30	1.67
33512285--33512318	16	2.1	16	88	0	50	38	5	0	55	1.24
33513107--33513155	24	2.0	24	84	7	64	44	6	8	40	1.59
33516434--33516510	38	2.0	38	89	0	118	53	10	1	35	1.44
33520071--33520102	16	2.0	17	88	11	50	46	0	3	50	1.17
33520959--33521041	30	2.7	31	83	5	98	24	7	12	56	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33521696--33521736	20	2.0	20	85	0	55	53	2	12	31	1.51
33526630--33526692	32	2.0	32	81	6	74	46	11	7	34	1.69
33529212--33529254	22	2.0	22	86	9	61	44	6	6	41	1.58
33531786--33531815	14	2.1	14	93	6	51	70	0	30	0	0.88
33541676--33541737	29	2.4	25	74	23	65	54	1	3	40	1.26
33541684--33541779	31	3.2	30	76	7	97	51	4	2	42	1.33
33550659--33551105	226	2.0	226	100	0	894	30	15	18	35	1.92
33553722--33553826	34	3.1	34	94	2	176	16	9	16	58	1.63
33555630--33555669	20	2.1	19	86	13	55	5	22	17	55	1.61
33574417--33574579	59	2.8	58	81	9	199	28	18	17	36	1.93
33574546--33574651	55	1.9	54	86	5	151	30	16	16	35	1.92
33574836--33574896	31	2.0	30	90	3	95	24	9	21	44	1.82
33578530--33578907	85	4.5	86	87	5	531	44	5	5	44	1.49
33578530--33578903	171	2.2	171	93	3	620	44	5	5	44	1.50
33579005--33579063	22	2.7	22	86	0	82	35	32	6	25	1.82
33581695--33581841	23	6.3	22	76	14	118	42	21	24	11	1.85
33581741--33581840	25	4.2	24	70	21	75	44	20	24	12	1.85
33581695--33581841	71	2.1	69	82	7	181	42	21	24	11	1.85
33581738--33581841	48	2.2	45	81	10	120	44	21	23	11	1.84
33583639--33583706	29	2.3	29	82	5	75	26	13	1	58	1.43
33584519--33584843	60	5.4	58	78	7	267	34	18	20	27	1.95
33584533--33584849	119	2.7	119	76	8	272	35	18	19	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33588031--33588093	20	2.9	22	79	18	69	63	0	1	34	1.04
33591005--33591043	20	1.9	21	89	5	62	61	2	33	2	1.23
33591468--33591510	22	2.0	22	86	9	61	44	2	0	53	1.13
33599614--33599641	14	2.0	14	100	0	56	28	0	0	71	0.86
33606365--33606557	63	3.0	64	92	1	325	30	5	12	51	1.61
33624438--33624473	3	12.0	3	87	0	54	61	2	36	0	1.11
33626007--33626040	14	2.2	16	90	10	54	55	0	0	44	0.99
33633553--33633604	25	2.1	25	96	0	95	23	23	21	32	1.98
33650833--33650863	16	2.0	16	93	6	55	58	9	6	25	1.54
33653924--33653994	37	1.9	37	94	0	124	49	11	0	39	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120