genome.fa.s5.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  18  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4866498--4866611	57	2.0	55	90	6	176	50	7	14	28	1.69
4867874--4867961	41	2.2	41	95	2	160	43	6	21	28	1.78
4869994--4870027	13	2.6	13	85	0	50	50	0	29	20	1.49
4874012--4874045	17	1.9	18	88	5	52	50	0	0	50	1.00
4876800--4876903	37	2.7	38	76	5	93	31	26	19	22	1.97
4877131--4877291	79	2.0	79	98	0	313	39	23	0	36	1.60
4880350--4880542	98	2.0	95	81	8	221	38	13	16	31	1.88
4880350--4880542	97	2.0	96	81	8	223	38	13	16	31	1.88
4880774--4881052	29	9.6	28	68	21	121	36	3	27	32	1.73
4880861--4881170	29	10.6	29	70	14	176	40	1	25	31	1.67
4880808--4881202	116	3.4	116	83	5	458	41	2	24	31	1.68
4880833--4881205	59	6.4	59	82	4	409	41	2	24	31	1.68
4880865--4881206	29	11.7	29	70	9	167	42	2	23	30	1.67
4882645--4882689	17	2.6	17	89	6	65	55	4	0	40	1.20
4883388--4883772	50	7.8	49	76	4	355	15	27	20	36	1.93
4883348--4883751	98	4.1	98	89	1	587	15	27	19	37	1.92
4895273--4895539	29	9.1	28	69	12	99	36	3	27	32	1.75
4895273--4895547	58	4.7	57	81	6	250	36	3	26	33	1.74
4895354--4895548	58	3.3	60	89	5	265	37	2	25	33	1.70
4895453--4895547	30	3.2	30	69	20	83	40	3	23	33	1.70
4896302--4896340	15	2.6	15	87	0	51	0	23	5	71	1.05
4897511--4897601	17	5.2	17	75	9	85	52	5	0	41	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4900784--4900832	21	2.3	21	96	0	89	26	28	10	34	1.89
4901623--4901650	13	2.2	13	100	0	56	32	25	21	21	1.98
4901571--4901702	65	2.0	65	92	0	219	34	22	16	26	1.95
4902692--4902724	16	2.1	16	94	0	57	27	18	0	54	1.44
4902697--4902730	16	2.1	16	88	0	50	35	20	0	44	1.52
4906423--4906493	30	2.3	30	80	7	81	66	0	5	28	1.14
4914311--4914347	13	2.8	14	88	8	51	37	13	8	40	1.74
4916153--4916177	3	8.3	3	100	0	50	32	0	0	68	0.90
4917904--4917949	24	2.0	23	91	4	74	23	13	6	56	1.60
4918712--4918787	26	2.9	26	90	0	107	15	27	25	31	1.96
4922583--4922627	23	1.9	24	86	13	67	6	46	0	46	1.29
4923247--4923281	15	2.4	14	90	4	52	54	0	0	45	0.99
4928012--4928051	17	2.4	17	87	8	55	17	12	22	47	1.81
4928040--4928135	41	2.3	41	92	0	156	31	5	23	39	1.77
4929157--4929187	15	2.0	16	93	6	55	51	3	0	45	1.17
4931653--4931715	24	2.6	24	85	5	74	26	9	7	55	1.59
4933615--4933665	24	2.1	24	85	0	66	25	9	7	56	1.58
4934683--4934730	20	2.4	19	82	6	51	39	0	2	58	1.10
4935543--4935586	21	2.1	21	83	8	54	70	4	6	18	1.27
4935832--4935939	40	2.7	40	80	0	126	41	18	17	22	1.90
4935913--4936075	41	4.0	41	78	7	161	41	14	23	20	1.89
4936683--4936721	21	1.9	20	84	5	51	25	2	7	64	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4938264--4938379	58	2.0	59	86	1	162	43	12	18	24	1.85
4946249--4946282	9	3.8	9	88	0	50	38	0	38	23	1.55
4949345--4949390	15	2.9	15	83	6	56	30	10	0	58	1.32
4956162--4956262	36	2.8	36	89	0	148	32	14	29	22	1.94
4956932--4957003	21	3.4	21	82	5	74	31	11	25	31	1.90
4964759--4964830	21	3.4	21	80	0	81	33	12	25	29	1.92
4968090--4968125	19	1.9	18	94	5	63	47	5	8	38	1.57
4969994--4970037	23	2.0	22	86	4	61	45	15	0	38	1.47
4973219--4973289	19	3.6	19	70	10	52	35	23	28	12	1.92
4973237--4973278	22	1.9	22	85	0	57	30	19	33	16	1.94
4973233--4973288	19	2.7	22	70	16	55	30	21	32	16	1.95
4987795--4987871	29	2.7	29	92	8	138	48	0	0	51	1.00
4987795--4987871	28	2.7	28	94	6	136	48	0	0	51	1.00
4989157--4989233	29	2.6	29	80	11	86	37	5	23	33	1.77
4989294--4989419	30	4.2	30	79	6	121	38	2	22	36	1.67
4989348--4989435	30	2.9	29	82	12	90	40	3	20	35	1.69
4989854--4989983	17	8.1	17	69	18	82	42	3	3	50	1.36
4989854--4989970	6	20.0	6	69	15	75	41	3	4	50	1.38
4990738--4990817	33	2.5	31	78	9	81	47	3	3	45	1.38
4991610--4991676	32	2.1	31	83	5	80	22	10	5	61	1.50
4991954--4992205	30	8.6	30	73	13	195	34	24	4	36	1.77
4991954--4992164	59	3.6	60	84	5	270	35	25	4	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4991964--4992205	59	4.1	60	81	9	218	33	24	4	36	1.77
4994807--4994834	6	4.7	6	100	0	56	50	0	32	17	1.47
4994807--4994851	18	2.5	17	85	7	54	48	0	28	22	1.50
4994953--4995053	38	2.6	40	71	10	100	21	19	28	29	1.98
5003199--5003425	98	2.3	98	86	5	311	37	20	25	16	1.93
5003201--5003487	98	3.0	97	81	5	262	37	19	25	16	1.93
5003549--5004419	92	9.5	92	94	0	1521	33	16	18	31	1.93
5005018--5005166	13	12.5	12	71	15	105	40	3	3	53	1.34
5005018--5005166	6	25.0	6	71	16	105	40	3	3	53	1.34
5005046--5005140	32	3.0	32	90	3	140	38	3	3	54	1.32
5005018--5005179	17	9.1	17	74	13	114	40	3	3	53	1.32
5007160--5007393	30	8.0	30	75	8	187	35	27	4	33	1.76
5007161--5007391	59	3.9	58	79	6	252	35	26	4	33	1.76
5007404--5007677	144	1.9	144	80	8	324	31	22	7	38	1.82
5008940--5008980	3	13.7	3	86	0	55	26	4	0	68	1.10
5009211--5009256	4	12.2	4	90	9	62	26	2	0	71	0.97
5010514--5010582	11	6.6	11	79	12	74	46	1	1	50	1.19
5010515--5010579	31	2.1	32	94	2	114	47	1	1	49	1.20
5010514--5010582	20	3.3	22	84	7	74	46	1	1	50	1.19
5011779--5011971	95	2.0	95	97	0	368	39	19	6	34	1.78
5013309--5013387	23	3.6	23	72	19	87	26	21	5	46	1.72
5013333--5013405	19	3.6	19	71	20	67	26	24	2	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5013310--5013405	42	2.3	42	100	0	192	26	22	4	46	1.70
5014713--5014748	7	5.1	7	89	0	54	19	0	52	27	1.46
5015036--5015095	18	3.4	18	75	13	61	56	6	0	36	1.26
5015059--5015108	15	3.0	16	73	21	57	58	2	0	40	1.10
5015046--5015105	16	3.6	16	75	14	50	60	5	0	35	1.19
5015039--5015108	34	2.0	35	94	2	124	55	4	0	40	1.19
5020951--5021014	9	7.7	9	70	26	52	50	0	0	50	1.00
5021717--5021754	11	3.6	11	82	13	53	47	0	0	52	1.00
5021717--5021754	20	1.9	20	94	0	67	47	0	0	52	1.00
5023122--5023148	2	13.5	2	100	0	54	48	0	0	51	1.00
5023252--5023305	8	6.2	8	79	12	54	75	1	3	18	1.03
5025390--5025455	32	2.1	32	88	0	96	33	15	6	45	1.70
5028703--5028782	3	27.3	3	82	5	101	70	1	28	0	0.96
5028698--5028788	9	10.3	9	79	11	73	71	1	27	0	0.93
5030506--5030919	49	8.5	49	72	11	289	36	18	25	18	1.94
5030501--5031141	98	6.7	98	79	9	680	36	18	25	18	1.94
5031244--5031525	90	3.0	91	81	9	282	34	17	17	30	1.93
5031331--5031634	103	2.9	104	92	1	495	36	16	17	28	1.92
5032714--5032808	48	2.0	46	82	8	111	35	6	5	52	1.49
5035798--5035835	18	2.1	19	95	5	69	21	34	2	42	1.67
5036638--5036929	142	2.0	145	87	3	421	53	5	4	36	1.44
5037975--5038015	21	1.9	22	85	5	57	65	12	17	4	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5043733--5044052	159	2.0	159	86	0	451	27	24	13	35	1.92
5043892--5044363	98	4.9	94	76	9	343	26	22	16	34	1.95
5055467--5055536	29	2.3	30	75	18	74	67	1	11	20	1.30
5055468--5055579	30	3.8	30	73	14	81	61	0	12	25	1.37
5064245--5064297	26	2.0	27	85	10	74	52	7	0	39	1.30
5064604--5064631	3	9.3	3	100	0	56	64	0	0	35	0.94
5065179--5065301	40	3.1	40	81	6	151	13	23	15	47	1.81
5072492--5072521	15	2.0	15	100	0	60	33	20	13	33	1.91
5076239--5076433	30	6.6	30	80	6	127	31	6	26	35	1.82
5076275--5076448	59	2.9	58	83	7	190	33	7	22	35	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120