genome.fa.s5.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  117  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35691689--35691749	19	3.1	19	79	13	61	62	1	0	36	1.05
35691689--35691749	10	6.2	9	78	12	50	62	1	0	36	1.05
35695553--35695582	15	2.0	15	93	0	51	6	10	6	76	1.15
35709621--35709682	18	3.4	17	75	14	61	67	1	1	29	1.09
35709970--35710027	26	2.2	27	81	3	64	36	3	1	58	1.25
35726470--35726531	20	3.1	20	92	0	106	48	33	1	16	1.56
35726465--35726494	15	2.0	15	100	0	60	46	33	0	20	1.51
35726565--35726603	11	3.6	11	86	3	53	15	30	30	23	1.95
35726594--35726665	14	5.2	14	79	1	83	18	22	26	33	1.96
35726594--35726678	21	4.2	20	76	5	80	17	22	24	35	1.95
35726583--35726678	7	14.4	7	74	10	67	17	23	25	33	1.96
35727728--35727760	3	11.3	3	93	6	59	30	0	0	69	0.88
35733211--35733250	15	2.7	15	92	3	64	50	25	5	20	1.68
35733294--35733332	11	3.5	11	89	0	60	17	25	28	28	1.98
35733294--35733346	22	2.3	23	90	6	81	16	26	26	30	1.97
35733284--35733333	11	4.6	11	85	2	57	16	28	30	26	1.96
35734396--35734426	3	10.3	3	100	0	62	32	0	0	67	0.91
35737029--35737067	16	2.4	16	80	16	53	56	2	2	38	1.27
35737063--35737104	21	2.0	21	86	4	59	45	2	0	52	1.13
35737073--35737113	21	2.0	20	90	4	64	41	0	0	58	0.98
35737125--35737177	18	2.8	19	78	18	58	39	1	3	54	1.29
35737133--35737192	18	3.2	18	76	23	54	35	3	3	58	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35737125--35737193	20	3.5	20	76	21	67	34	2	4	57	1.33
35738293--35738358	33	2.0	34	82	8	82	33	3	0	63	1.10
35741374--35741449	33	2.3	36	76	17	83	67	0	23	9	1.20
35752584--35752626	22	2.0	22	95	0	77	34	18	13	32	1.90
35754850--35755008	7	24.1	7	83	10	106	45	0	53	0	1.04
35754850--35755001	12	11.6	13	80	8	123	46	0	53	0	1.05
35754850--35755008	14	12.1	13	79	9	119	45	0	53	0	1.04
35754887--35755016	21	6.4	21	72	10	117	43	0	55	0	1.05
35754854--35755019	40	4.2	39	85	8	203	45	0	53	0	1.04
35758533--35758565	17	1.9	17	88	11	50	21	9	3	66	1.33
35770182--35770218	11	3.3	11	85	7	56	75	0	8	16	1.02
35770315--35770355	21	2.0	21	85	9	57	63	7	4	24	1.40
35770521--35770678	9	17.1	9	66	17	74	30	3	2	63	1.23
35770574--35770671	46	2.1	46	84	3	135	32	2	2	63	1.17
35770521--35770678	27	5.7	29	72	16	104	30	3	2	63	1.23
35770583--35770680	17	5.5	18	71	20	64	29	2	2	66	1.14
35772897--35772944	4	11.5	4	84	8	60	20	2	75	2	1.02
35772897--35772944	13	3.8	12	83	8	60	20	2	75	2	1.02
35780496--35780779	138	2.1	138	89	0	442	41	5	5	46	1.52
35781490--35781516	13	2.1	13	100	0	54	48	7	14	29	1.71
35785405--35785494	45	2.0	45	82	4	110	33	12	16	37	1.86
35796596--35796642	23	2.1	23	84	11	62	46	10	12	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35801156--35801190	14	2.5	14	80	0	52	37	22	8	31	1.85
35803397--35803429	6	5.5	6	100	0	66	84	0	0	15	0.61
35805302--35805352	17	3.1	16	76	17	59	43	1	1	52	1.23
35806060--35806087	6	4.7	6	100	0	56	85	0	0	14	0.59
35806057--35806099	18	2.4	18	76	0	50	72	2	0	25	0.97
35806436--35806478	21	2.0	21	95	0	77	39	0	0	60	0.97
35807908--35807958	17	3.1	16	76	17	59	43	1	1	52	1.23
35812171--35812200	13	2.3	13	94	0	51	73	0	3	23	0.98
35812356--35812437	36	2.4	34	84	13	98	50	2	1	46	1.22
35812814--35812847	17	1.9	17	88	5	50	26	0	0	73	0.83
35814512--35814555	7	6.4	7	94	2	54	0	20	11	68	1.20
35814512--35814555	14	3.2	14	90	3	63	0	20	11	68	1.20
35814517--35814558	7	6.0	7	97	0	66	0	19	14	66	1.25
35825201--35825267	27	2.4	27	92	2	116	44	14	19	20	1.86
35827088--35827112	5	5.0	5	100	0	50	20	0	0	80	0.72
35829698--35829851	57	2.6	56	84	12	191	24	21	18	35	1.96
35829809--35829938	62	2.1	63	86	2	183	26	20	17	35	1.95
35829904--35829973	35	2.0	35	100	0	140	34	20	8	37	1.83
35829849--35830022	96	1.8	96	93	2	305	32	20	14	31	1.93
35829939--35830122	61	3.0	60	84	8	246	29	23	16	30	1.96
35834865--35834962	30	3.3	30	82	5	101	27	7	5	60	1.44
35835845--35836232	61	6.5	59	82	7	315	34	16	19	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35835859--35836085	60	3.7	59	87	4	276	35	15	19	29	1.93
35835845--35836119	121	2.3	120	80	3	311	35	17	18	29	1.93
35836028--35836262	56	4.0	56	79	7	202	33	16	21	28	1.95
35836377--35836531	59	2.5	61	89	5	233	38	17	18	26	1.92
35848376--35848403	2	14.0	2	100	0	56	50	0	0	50	1.00
35867998--35868073	36	2.1	35	97	2	143	47	13	14	25	1.80
35874933--35875005	29	2.5	28	81	14	85	30	10	16	42	1.82
35887687--35887712	2	13.0	2	100	0	52	50	0	0	50	1.00
35894209--35894238	6	5.0	6	91	0	51	16	3	33	46	1.64
35900128--35900198	31	2.3	30	83	11	90	30	14	11	43	1.80
35904330--35904364	7	5.0	7	92	0	61	57	2	0	40	1.14
35906272--35906365	48	1.9	49	89	6	147	28	18	9	43	1.81
35913048--35913087	20	2.0	20	85	9	55	62	2	5	30	1.29
35917654--35917700	15	2.8	16	81	15	51	63	17	2	17	1.40
35919400--35919437	14	2.5	15	83	12	51	55	7	0	36	1.29
35920857--35920929	4	17.2	4	78	10	74	68	0	31	0	0.90
35920857--35920917	21	3.2	20	75	22	67	70	0	29	0	0.88
35921571--35921613	21	2.1	21	91	4	70	60	13	0	25	1.34
35921707--35921748	22	2.0	21	85	4	57	71	4	2	21	1.16
35922292--35922327	18	1.9	19	88	5	56	77	0	0	22	0.76
35922651--35922682	15	2.1	15	100	0	64	34	6	6	53	1.51
35922886--35922925	21	2.0	20	85	14	55	32	25	2	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35922892--35922935	21	2.1	21	83	8	54	29	25	2	43	1.67
35930703--35930790	36	2.5	35	83	9	90	37	6	2	53	1.40
35936772--35936806	5	7.0	5	100	0	70	0	60	0	40	0.97
35941954--35942002	26	1.9	25	88	12	73	42	2	0	55	1.11
35942548--35942573	2	13.0	2	100	0	52	50	0	0	50	1.00
35943163--35943195	15	2.2	15	89	10	50	66	0	0	33	0.92
35945692--35945725	4	8.5	4	93	0	59	29	0	23	47	1.52
35947357--35947402	21	2.1	22	84	8	58	43	8	2	45	1.47
35955154--35955294	73	1.9	72	85	1	192	27	30	17	24	1.97
35963773--35963808	15	2.5	15	90	4	56	58	19	2	19	1.52
35964548--35964584	15	2.6	14	91	8	58	40	0	2	56	1.13
35965628--35965693	31	2.1	32	85	2	89	46	4	9	39	1.56
35971832--35971892	31	2.0	31	87	6	88	34	13	9	42	1.77
35972546--35972591	22	2.1	22	95	0	83	34	10	4	50	1.57
35976418--35976443	6	4.3	6	100	0	52	69	0	0	30	0.89
35980600--35980654	27	2.1	27	83	10	69	52	7	3	36	1.47
35986793--35986831	6	6.5	6	87	0	60	76	2	20	0	0.90
35990176--35990832	174	3.7	174	80	6	646	33	25	17	22	1.96
35990176--35990845	89	7.6	88	80	3	668	33	25	18	22	1.96
35991611--35991669	20	3.2	20	71	26	67	28	8	18	44	1.79
35992454--35992522	31	2.2	31	84	5	95	30	17	13	39	1.87
36012601--36013111	60	8.5	60	75	7	351	27	18	14	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36012640--36013113	122	3.9	120	77	8	403	28	17	13	39	1.89
36020865--36020902	19	2.0	20	84	5	51	57	0	34	7	1.28
36027943--36027990	6	8.0	6	85	0	60	18	31	2	47	1.60
36027943--36027997	18	3.1	18	81	0	74	20	30	1	47	1.60
36035057--36035089	11	3.0	11	90	0	57	39	0	0	60	0.97
36035054--36035106	22	2.5	19	75	24	52	35	0	0	64	0.94
36035133--36035172	20	2.0	20	100	0	80	40	0	0	60	0.97
36061243--36061292	19	2.5	20	81	9	59	50	6	0	44	1.26
36061469--36061527	29	2.0	30	86	3	84	33	1	10	54	1.44
36062263--36062294	17	1.9	17	93	6	57	31	0	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120