genome.fa.s5.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  101  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29109133--29109172	12	3.2	12	83	16	55	45	10	2	42	1.51
29111735--29111795	31	2.0	31	83	6	79	37	8	8	45	1.64
29151326--29151375	20	2.5	21	78	9	61	50	0	0	50	1.00
29151318--29151363	24	2.0	24	87	12	69	47	0	0	52	1.00
29151329--29151377	18	2.8	18	78	3	55	51	0	0	48	1.00
29158674--29158933	118	2.2	118	99	0	511	50	13	12	23	1.75
29166944--29166995	13	4.1	13	78	11	63	57	1	0	40	1.10
29166944--29167008	12	5.5	11	78	20	53	58	1	0	40	1.07
29166951--29167008	10	4.9	11	76	19	55	58	1	0	39	1.08
29171922--29171956	6	5.8	6	96	0	52	51	5	34	8	1.56
29174623--29174656	12	2.7	13	86	4	52	67	0	0	32	0.91
29175175--29175241	30	2.3	30	80	12	77	32	2	4	59	1.32
29175766--29175824	31	1.9	31	82	6	75	69	3	3	23	1.19
29176201--29176240	12	3.3	12	89	6	55	45	0	2	52	1.14
29177881--29177924	3	15.0	3	95	4	81	65	0	0	34	0.93
29178225--29178283	29	2.0	29	100	0	118	37	6	25	30	1.82
29178319--29178371	23	2.2	25	86	6	74	39	1	0	58	1.09
29180606--29180654	22	2.4	21	86	10	66	22	8	10	59	1.56
29183224--29183282	31	1.9	31	86	6	84	40	1	5	52	1.33
29184429--29184476	24	2.0	23	88	4	69	58	2	2	37	1.22
29185980--29186021	16	2.6	16	88	0	66	35	0	0	64	0.94
29187089--29187124	18	2.0	18	88	0	54	27	0	2	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29187562--29187586	7	3.6	7	100	0	50	0	56	0	44	0.99
29191938--29191966	13	2.1	14	93	6	51	62	3	6	27	1.37
29199521--29199553	6	5.5	6	92	0	57	21	30	0	48	1.50
29199521--29199557	12	3.1	12	92	0	65	21	27	0	51	1.48
29208145--29208182	18	2.1	18	85	9	51	39	13	18	28	1.88
29214002--29214035	7	4.9	7	92	0	50	38	11	29	20	1.88
29214775--29214841	24	2.9	23	93	4	100	52	8	11	26	1.68
29214783--29214841	24	2.5	24	100	0	118	49	8	13	28	1.71
29216774--29216842	24	2.9	24	97	0	129	55	8	11	24	1.64
29220246--29220283	3	12.7	3	100	0	76	0	31	0	68	0.90
29222097--29222131	3	11.7	3	100	0	70	65	0	0	34	0.93
29223008--29223078	36	2.0	36	85	0	97	33	8	19	38	1.82
29229360--29229388	14	2.1	14	100	0	58	0	44	0	55	0.99
29229388--29229412	12	2.1	12	100	0	50	0	68	0	32	0.90
29231132--29231164	16	2.1	16	100	0	66	6	21	36	36	1.78
29239005--29239037	3	11.3	3	90	6	50	33	0	3	63	1.10
29239534--29239568	1	35.0	1	94	0	61	2	0	97	0	0.19
29244874--29244920	22	2.1	22	84	11	60	57	0	6	36	1.24
29249527--29249644	62	1.9	59	84	5	155	41	4	4	50	1.41
29257837--29257875	20	2.0	20	84	0	51	64	7	0	28	1.21
29271691--29271721	1	31.0	1	93	0	53	3	96	0	0	0.21
29271691--29271726	11	3.0	12	92	8	56	8	91	0	0	0.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29277571--29277685	59	1.9	60	80	7	135	29	10	13	46	1.76
29278787--29278893	41	2.6	41	86	1	135	34	18	28	18	1.95
29278868--29278920	27	2.0	27	88	0	79	33	18	26	20	1.96
29278833--29278961	68	1.9	68	90	0	204	29	18	31	20	1.97
29280714--29280806	43	2.2	43	86	1	125	29	20	24	25	1.99
29281337--29281407	36	2.0	36	97	0	133	26	4	26	42	1.74
29295970--29296025	28	2.0	28	100	0	112	39	0	39	21	1.54
29329138--29329168	16	2.0	16	93	6	55	16	25	0	58	1.38
29333480--29333541	18	3.4	18	74	12	63	50	6	0	43	1.28
29342097--29342406	29	10.5	28	71	14	148	36	4	23	35	1.75
29342096--29342417	30	10.9	29	71	14	187	36	4	23	35	1.76
29342069--29342414	59	5.9	59	79	8	264	36	4	23	34	1.77
29342152--29342414	117	2.2	117	81	8	302	35	3	23	36	1.73
29344401--29344478	17	4.7	16	81	9	77	55	2	1	41	1.22
29344418--29344478	5	10.8	6	75	16	51	55	1	1	40	1.19
29344417--29344460	11	4.0	11	90	0	70	59	0	0	40	0.98
29344400--29344457	22	2.6	22	86	8	73	55	1	0	43	1.10
29344734--29345877	92	12.5	91	92	1	1747	34	18	14	32	1.92
29347262--29347311	6	8.2	6	86	10	66	2	18	2	78	0.95
29348130--29348161	15	2.2	15	94	5	57	0	25	0	75	0.81
29348160--29348189	12	2.5	12	94	0	51	0	0	16	83	0.65
29351850--29351878	10	2.9	10	100	0	58	41	10	17	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29353107--29353260	29	5.3	28	74	8	121	37	3	24	35	1.72
29353107--29353241	29	4.7	28	75	7	128	36	2	23	37	1.70
29353107--29353239	57	2.3	58	80	7	146	36	3	22	37	1.70
29355252--29355337	17	5.1	16	82	10	84	52	3	2	41	1.31
29355268--29355323	11	5.0	11	82	4	67	55	1	1	41	1.21
29355268--29355343	28	2.7	29	83	4	84	53	2	2	40	1.28
29358028--29358064	2	18.5	2	100	0	74	0	48	0	51	1.00
29361997--29362045	24	2.0	24	84	7	64	46	6	0	46	1.27
29364370--29364398	3	9.7	3	100	0	58	0	65	0	34	0.93
29366921--29367001	41	2.0	41	92	2	135	19	17	30	32	1.95
29368431--29368465	18	1.9	18	94	0	61	42	14	0	42	1.45
29370433--29370463	7	4.4	7	91	0	53	25	25	12	35	1.92
29371978--29372003	6	4.3	6	100	0	52	0	69	0	30	0.89
29379988--29380060	28	2.6	27	81	14	78	36	1	1	60	1.14
29380288--29380318	3	10.3	3	100	0	62	67	0	0	32	0.91
29398740--29398775	15	2.4	15	90	0	54	8	33	19	38	1.82
29401346--29401370	8	3.1	8	100	0	50	24	24	0	52	1.48
29403203--29403246	17	2.5	17	85	3	52	4	18	0	77	0.94
29403201--29403247	24	2.0	24	84	16	62	4	19	0	76	0.95
29403716--29403780	30	2.2	30	83	5	78	44	33	1	20	1.61
29403736--29403780	15	3.0	15	96	0	81	44	33	2	20	1.63
29403836--29403875	21	1.9	21	84	0	53	17	27	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29403869--29403910	20	2.1	20	90	0	66	19	21	21	38	1.94
29404941--29404969	3	9.7	3	100	0	58	31	0	0	68	0.89
29406604--29406637	18	2.0	18	88	11	54	52	14	0	32	1.42
29426371--29426435	28	2.2	30	84	13	82	27	6	0	66	1.15
29427148--29427223	30	2.6	30	73	22	81	61	1	3	32	1.22
29428208--29428249	22	1.9	22	90	0	66	35	0	2	61	1.09
29429849--29429898	2	26.0	2	92	8	86	48	0	0	52	1.00
29429849--29429898	25	2.0	25	100	0	100	48	0	0	52	1.00
29430929--29431176	59	4.2	57	79	9	157	34	4	25	35	1.75
29430966--29431183	30	7.4	29	85	6	235	36	3	22	37	1.72
29432261--29432681	209	2.0	209	100	0	842	38	11	11	38	1.77
29433239--29433314	6	13.0	6	76	20	81	53	1	1	43	1.17
29433239--29433324	11	7.5	11	75	13	66	53	2	1	43	1.21
29433240--29433314	31	2.3	32	86	8	100	54	1	1	42	1.17
29433241--29433314	17	4.6	16	81	11	98	55	1	1	41	1.17
29433278--29433332	27	2.0	27	82	0	65	52	7	1	38	1.40
29434160--29434203	23	2.0	23	86	8	65	31	2	4	61	1.28
29434325--29434353	14	2.1	14	93	6	51	34	0	0	65	0.93
29435065--29435089	2	12.5	2	100	0	50	0	48	0	52	1.00
29437821--29437866	7	6.6	7	100	0	92	28	0	43	28	1.55
29438286--29438340	19	2.6	21	77	13	60	54	14	0	30	1.41
29444716--29444756	21	1.9	22	85	14	59	17	7	7	68	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29446390--29446511	60	2.0	61	98	1	237	27	13	8	50	1.69
29457777--29457843	20	3.3	20	69	19	66	44	0	13	41	1.43
29457766--29457849	41	2.0	41	100	0	168	44	0	15	40	1.47
29460504--29460546	21	2.0	21	90	0	68	32	0	2	65	1.06
29467834--29467892	21	2.4	25	81	18	63	74	0	16	8	1.05
29468675--29468721	24	2.0	24	86	0	67	12	21	8	57	1.62
29470938--29471000	30	2.1	30	96	0	117	36	11	20	31	1.88
29479773--29479843	30	2.3	31	82	2	90	38	9	11	40	1.74
29484457--29484494	17	2.1	19	90	9	62	73	2	7	15	1.17
29486703--29486761	30	2.0	30	83	12	77	50	0	0	49	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120