genome.fa.s5.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  27  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7044078--7044291	88	2.5	83	77	16	204	34	7	18	40	1.77
7052944--7052996	27	1.9	28	84	3	72	20	0	24	54	1.44
7056084--7056119	18	2.0	18	100	0	72	16	5	38	38	1.72
7056169--7056199	3	10.3	3	100	0	62	67	0	32	0	0.91
7058073--7058105	13	2.4	14	85	5	50	51	0	6	42	1.26
7058853--7058889	16	2.3	17	81	13	51	56	0	0	43	0.99
7058922--7058975	15	3.3	15	79	18	63	53	1	0	44	1.11
7065130--7065164	16	2.1	16	89	5	52	25	5	5	62	1.40
7070002--7070048	22	2.1	22	92	0	76	12	21	2	63	1.39
7073566--7073689	20	6.2	20	75	7	126	31	23	30	14	1.94
7073589--7073723	40	3.4	40	91	2	200	30	22	32	14	1.93
7073548--7073697	20	7.5	20	68	14	94	32	24	30	13	1.93
7073606--7073725	20	6.0	20	70	14	86	30	23	31	15	1.95
7076059--7076130	35	2.1	35	94	0	126	23	43	4	29	1.72
7108295--7108324	13	2.3	13	100	0	60	26	36	6	30	1.82
7118796--7118872	23	3.3	23	78	7	82	44	19	23	12	1.85
7120649--7120688	19	2.2	19	90	4	64	20	15	0	65	1.28
7121989--7122063	29	2.5	31	82	8	93	53	8	2	36	1.45
7124876--7124920	3	15.3	3	81	4	56	68	0	31	0	0.89
7124876--7124926	17	2.9	17	91	5	84	70	0	29	0	0.87
7130371--7130400	14	2.1	14	100	0	60	20	6	40	33	1.78
7133707--7133746	17	2.3	18	86	4	55	2	15	2	80	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7135582--7135761	21	8.6	21	78	2	173	42	16	15	25	1.87
7135578--7135761	42	4.4	42	83	1	199	43	15	15	25	1.86
7135582--7135761	63	2.9	63	85	1	245	42	16	15	25	1.87
7138750--7138789	15	2.8	15	88	7	57	40	5	0	55	1.22
7140212--7140266	22	2.5	21	75	13	58	56	3	3	36	1.34
7140384--7140438	22	2.3	24	81	12	60	27	3	9	60	1.44
7140424--7140471	24	2.0	23	84	15	62	37	10	0	52	1.36
7141410--7141450	21	2.0	21	90	0	64	41	7	7	43	1.60
7147498--7147527	15	2.1	15	93	6	53	33	0	0	66	0.92
7154485--7154510	12	2.2	12	100	0	52	30	0	34	34	1.58
7158512--7158557	21	2.2	21	84	7	58	2	32	8	56	1.42
7160677--7160716	14	2.9	14	88	0	62	37	17	22	22	1.94
7160770--7160814	21	2.2	20	88	7	65	13	6	37	42	1.70
7165219--7165926	354	2.0	354	95	0	1281	26	23	19	31	1.98
7168918--7169007	21	4.3	21	70	9	58	21	18	23	36	1.95
7168916--7168984	7	9.9	7	72	12	52	20	15	23	40	1.91
7168923--7169007	14	6.1	14	75	8	66	21	18	23	36	1.95
7168956--7169014	21	2.8	21	70	14	50	22	22	23	32	1.98
7168948--7169057	14	8.2	13	76	5	76	19	20	21	39	1.93
7169004--7169057	26	2.1	26	85	0	72	18	16	20	44	1.87
7169728--7169797	2	35.0	2	100	0	140	50	0	0	50	1.00
7176370--7176411	22	1.9	22	90	0	66	16	30	26	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7176427--7176525	14	7.2	14	74	3	76	22	24	22	31	1.98
7177593--7177621	3	10.0	3	92	7	51	31	0	0	68	0.89
7179189--7179484	52	5.7	52	86	5	375	27	15	23	32	1.96
7180195--7180253	21	2.8	22	76	7	68	37	15	22	25	1.93
7186229--7186574	52	6.6	52	81	3	349	28	14	23	33	1.94
7186237--7186526	156	1.9	156	86	4	424	29	15	22	33	1.94
7191340--7191374	17	2.1	17	94	0	61	37	0	11	51	1.38
7193587--7193658	36	2.0	36	97	0	135	34	13	18	33	1.90
7203564--7203603	21	1.9	21	100	0	80	32	25	17	25	1.97
7203564--7203621	21	2.8	20	87	10	73	32	25	13	27	1.94
7209323--7210171	424	2.0	424	91	0	1385	26	20	14	37	1.92
7214967--7215105	39	3.6	39	86	0	152	37	20	20	21	1.95
7229252--7229302	26	1.9	27	88	11	79	45	7	7	39	1.62
7229457--7229502	20	2.4	20	85	7	60	52	6	0	41	1.27
7229515--7229613	20	5.3	18	69	19	62	53	3	1	42	1.23
7232259--7232311	19	2.9	18	83	10	63	49	3	0	47	1.19
7232329--7232414	17	5.3	17	69	20	51	48	2	4	44	1.36
7235824--7235857	15	2.2	16	89	5	52	67	0	0	32	0.91
7239943--7240134	99	1.9	99	95	0	348	44	5	21	28	1.74
7240105--7240161	24	2.4	24	90	0	87	52	1	28	17	1.54
7264267--7264317	24	2.1	24	85	0	66	56	7	9	25	1.58
7266930--7267021	43	2.1	43	87	0	130	23	32	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7266946--7267192	43	5.8	43	90	1	356	19	31	21	27	1.98
7266959--7267192	85	2.7	86	88	3	348	20	31	21	27	1.98
7266947--7267192	128	1.9	128	88	3	370	19	30	21	27	1.98
7267261--7267289	15	1.9	15	100	0	58	48	34	3	13	1.60
7267500--7267542	21	2.0	21	95	0	77	2	48	20	27	1.62
7267528--7267684	66	2.4	65	90	1	251	14	25	17	42	1.87
7273119--7273193	35	2.3	34	88	11	120	44	8	5	42	1.56
7273209--7273287	8	9.8	8	76	13	56	56	0	1	41	1.07
7273209--7273340	30	4.5	30	69	19	98	55	0	1	42	1.14
7273243--7273277	13	2.8	13	95	4	63	65	0	0	34	0.93
7273365--7273870	18	27.6	18	67	12	106	47	4	2	45	1.35
7273217--7273452	12	19.6	12	67	17	89	51	2	1	43	1.26
7273334--7274090	113	6.8	113	89	5	1118	47	4	2	45	1.37
7273744--7273813	32	2.3	30	82	9	79	48	5	2	42	1.41
7273862--7274000	26	5.3	26	67	22	85	45	5	2	46	1.39
7273968--7274232	44	5.7	43	73	18	203	50	4	1	43	1.28
7273983--7274232	62	3.8	62	72	23	199	51	3	1	43	1.26
7274068--7274132	14	4.5	14	71	21	53	50	3	0	46	1.17
7274039--7274232	26	7.1	27	69	17	75	51	3	0	44	1.23
7274012--7274138	22	6.0	22	65	15	70	51	3	0	44	1.23
7274088--7274208	18	6.5	18	67	23	81	53	3	0	42	1.23
7273964--7274238	94	3.0	91	81	11	253	50	4	1	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7274151--7274208	8	7.2	8	74	14	57	58	1	0	39	1.08
7273968--7274232	138	1.9	138	92	0	440	50	4	1	43	1.28
7274496--7274543	18	2.7	18	80	0	69	52	2	0	45	1.12
7274532--7275045	76	7.2	76	72	17	433	48	4	1	44	1.32
7274678--7275052	135	2.8	135	95	0	664	48	4	1	45	1.31
7274947--7275146	94	2.1	94	94	0	348	52	3	1	43	1.27
7274529--7275179	210	3.0	209	77	11	647	49	4	1	44	1.32
7275006--7275063	8	7.2	8	74	14	57	58	1	0	39	1.08
7275019--7275146	18	6.9	18	73	15	82	54	4	0	39	1.27
7275001--7275141	32	4.5	31	71	21	91	52	4	1	41	1.29
7277517--7277549	16	2.1	17	88	11	52	30	6	0	63	1.18
7278666--7278971	41	7.4	41	86	2	364	24	24	21	29	1.99
7278631--7278990	82	4.4	81	81	5	350	24	24	22	28	2.00
7280088--7280118	16	1.9	16	93	0	53	25	0	3	70	1.02
7298863--7298940	41	1.9	41	89	0	120	17	15	37	29	1.91
7298808--7298993	94	2.0	96	83	4	243	16	15	38	29	1.89
7299661--7299739	29	2.7	29	78	3	79	26	17	16	39	1.91
7302571--7302623	17	3.1	17	73	13	54	20	1	5	71	1.16
7306257--7306286	15	2.0	15	93	0	51	43	0	26	30	1.55
7309087--7309177	23	4.0	23	82	0	101	25	13	16	45	1.83
7314955--7315015	25	2.4	27	89	8	92	55	6	6	31	1.51
7330186--7330353	85	2.0	85	79	2	185	24	21	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7330056--7330466	208	2.0	208	89	0	626	23	22	17	36	1.94
7330404--7330526	48	2.6	48	82	2	149	23	26	15	34	1.94
7330278--7330612	171	2.0	171	89	2	521	22	22	17	37	1.94
7330701--7330894	39	5.0	39	76	7	196	27	18	29	24	1.98
7330693--7330894	78	2.6	77	87	3	271	27	18	29	24	1.98
7331130--7331379	99	2.5	99	79	2	272	18	31	16	33	1.93
7331130--7331376	50	5.0	49	74	6	205	17	31	16	33	1.93
7332303--7332362	11	5.5	11	80	6	59	6	8	0	85	0.76
7332305--7332365	21	2.9	21	85	9	72	6	9	0	83	0.80
7332305--7332365	32	1.9	32	90	6	97	6	9	0	83	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120