genome.fa.s5.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  88  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25457096--25457137	10	4.3	10	80	17	52	16	0	4	78	0.91
25457088--25457137	19	2.7	19	90	6	77	14	0	6	80	0.90
25457647--25457767	57	2.1	57	93	0	206	30	4	12	52	1.57
25458355--25458413	26	2.3	26	90	0	91	44	42	6	6	1.57
25475661--25475883	97	2.3	98	82	2	270	39	16	26	17	1.90
25475615--25476017	50	8.2	50	69	6	162	36	15	29	18	1.92
25475662--25475949	98	3.0	96	81	4	310	37	16	27	18	1.92
25475887--25476074	99	1.9	100	81	3	227	36	14	28	20	1.93
25477086--25477138	26	2.0	26	81	0	61	45	35	7	11	1.69
25477486--25477542	6	9.2	6	75	21	55	17	1	3	77	1.00
25477491--25477548	19	2.9	21	75	15	59	15	3	3	77	1.04
25480415--25480498	19	4.4	19	68	21	68	64	3	9	22	1.39
25480416--25480534	57	2.1	57	98	0	229	63	3	9	24	1.40
25480416--25480494	18	4.2	18	67	19	54	63	3	10	22	1.42
25480433--25480522	18	4.8	18	68	24	62	65	2	7	24	1.30
25480849--25480963	29	4.0	29	75	7	108	40	3	20	35	1.70
25480849--25480950	30	3.5	30	77	9	111	42	3	20	33	1.71
25480891--25480967	30	2.7	28	82	6	75	40	2	20	36	1.67
25482249--25482286	3	12.7	3	88	0	58	26	34	0	39	1.57
25482252--25482286	12	2.9	12	100	0	70	25	34	0	40	1.56
25485386--25485438	15	3.3	15	73	19	52	45	0	0	54	0.99
25485472--25485511	13	3.0	13	83	16	55	45	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25485472--25485506	15	2.5	14	90	9	54	40	0	0	60	0.97
25485512--25485551	7	5.7	7	88	11	64	60	0	0	40	0.97
25485509--25485633	52	2.4	53	88	7	186	52	0	6	40	1.32
25485577--25485603	14	1.9	14	100	0	54	62	0	0	37	0.95
25486851--25486890	3	13.7	3	94	5	73	67	0	0	32	0.91
25487935--25487964	3	10.0	3	100	0	60	66	0	0	33	0.92
25489932--25489975	18	2.4	18	85	7	54	47	0	2	50	1.13
25491070--25491199	67	1.9	67	82	3	163	34	16	12	36	1.87
25491123--25491348	80	2.8	80	77	6	188	33	15	14	36	1.88
25492114--25492267	58	2.6	58	83	6	177	38	4	13	43	1.65
25491326--25492647	661	2.0	661	96	0	2468	40	8	10	40	1.71
25492558--25492647	39	2.3	40	78	5	112	37	6	15	40	1.74
25492826--25492937	58	1.9	58	83	3	145	46	11	5	36	1.63
25494063--25494175	5	20.6	5	72	20	68	69	1	5	23	1.18
25494063--25494175	21	5.2	20	72	21	68	69	1	5	23	1.18
25498072--25498139	21	3.3	19	76	17	64	25	0	30	44	1.54
25503789--25503863	26	2.7	27	84	13	100	49	1	0	49	1.09
25504724--25504813	28	3.1	28	64	16	67	47	1	0	51	1.08
25504719--25504771	17	3.3	17	70	20	51	41	0	0	58	0.98
25507709--25507769	26	2.3	26	83	10	72	65	3	0	31	1.09
25507753--25507803	22	2.2	22	82	6	57	66	1	0	31	1.03
25511632--25511685	26	2.1	26	89	6	83	25	24	12	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25514298--25514326	14	2.0	15	93	6	51	41	13	0	44	1.44
25514670--25514925	88	2.8	89	83	7	304	38	20	8	32	1.84
25515026--25515080	28	2.0	28	85	7	76	32	1	0	65	1.03
25515072--25515105	16	2.2	16	89	5	52	23	2	0	73	0.97
25515191--25515425	92	2.5	92	78	6	217	33	6	16	43	1.74
25515640--25515666	2	13.5	2	100	0	54	51	0	0	48	1.00
25517766--25517793	4	7.0	4	100	0	56	25	50	25	0	1.50
25525467--25525510	21	2.1	21	83	8	54	27	9	18	45	1.79
25537826--25537863	20	2.0	20	89	5	60	60	7	7	23	1.51
25539121--25539177	20	3.0	20	74	23	59	50	0	1	47	1.11
25539130--25539201	29	2.4	30	95	2	128	52	0	1	45	1.09
25539694--25539744	24	2.1	24	88	0	75	56	5	11	25	1.57
25540775--25540844	21	3.5	21	74	21	78	50	0	0	50	1.00
25540779--25540862	39	2.1	41	86	8	120	47	1	1	50	1.16
25541244--25541329	38	2.3	38	100	0	172	31	11	16	40	1.84
25551491--25551540	24	2.1	24	96	0	91	44	26	14	16	1.85
25556189--25556227	11	3.2	12	85	10	53	69	0	0	30	0.89
25558280--25558355	4	18.5	4	75	11	57	65	0	31	2	1.06
25558280--25558355	20	3.9	19	80	10	64	65	0	31	2	1.06
25560099--25560195	43	2.2	44	80	5	108	29	10	12	47	1.74
25565387--25565439	28	1.9	27	84	3	70	24	0	11	64	1.26
25570419--25570463	24	1.9	23	86	4	63	77	6	2	13	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25570407--25570452	18	2.6	18	80	13	58	73	8	6	10	1.23
25578737--25578798	27	2.3	27	88	2	99	14	33	33	17	1.90
25579164--25579224	27	2.3	27	97	0	113	18	24	37	19	1.94
25579258--25579307	25	2.0	25	96	0	91	48	6	20	26	1.72
25582017--25582074	28	2.1	28	83	6	73	36	1	12	50	1.50
25582066--25582115	26	1.9	26	84	8	66	30	0	12	58	1.34
25582181--25582239	6	9.8	6	89	7	93	66	15	1	16	1.34
25582675--25582716	6	7.2	6	94	5	77	16	33	33	16	1.92
25584606--25584647	13	3.4	12	78	15	50	11	4	2	80	0.95
25584650--25584681	16	2.1	16	94	5	57	59	0	0	40	0.97
25585650--25585711	27	2.3	27	97	0	115	22	40	25	11	1.87
25590577--25590634	15	3.4	18	73	20	52	22	27	0	50	1.50
25590944--25590984	15	2.5	17	80	11	59	65	0	0	34	0.93
25596318--25596492	59	3.0	58	78	4	165	37	3	22	36	1.71
25596343--25596525	59	3.1	60	81	10	198	36	1	24	37	1.66
25596358--25596578	59	3.7	58	77	12	175	35	2	22	39	1.67
25596254--25596578	30	11.0	29	71	14	168	35	4	23	37	1.74
25597626--25597665	3	13.3	3	100	0	80	35	0	0	65	0.93
25600787--25600877	6	15.8	6	71	13	66	51	2	1	45	1.20
25600787--25600895	17	6.4	17	81	5	121	51	2	0	44	1.22
25600818--25600850	11	2.8	12	86	9	50	51	3	0	45	1.16
25600805--25600850	23	2.0	24	86	4	67	50	2	2	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25600789--25600844	29	1.9	29	85	7	78	51	1	1	44	1.22
25600787--25600850	29	2.2	29	77	5	76	50	1	1	46	1.20
25600818--25600865	23	2.1	23	88	7	71	52	4	0	43	1.20
25601199--25602065	206	4.2	206	86	5	1111	23	22	18	36	1.95
25605007--25605382	30	12.5	30	92	1	603	34	4	24	35	1.76
25605027--25605081	19	3.3	19	63	36	54	29	3	27	40	1.73
25607204--25607323	6	20.2	6	72	13	79	49	2	0	48	1.14
25607238--25607323	17	5.3	17	78	10	81	54	3	0	41	1.17
25607585--25608237	68	9.5	68	94	2	1080	28	20	16	33	1.95
25607585--25608252	274	2.4	274	93	3	1130	28	20	17	33	1.95
25608931--25608981	1	51.0	1	92	0	84	0	0	3	96	0.24
25608930--25608981	27	1.9	27	96	0	95	0	0	5	94	0.32
25620300--25620672	30	12.4	30	93	0	604	35	3	23	36	1.72
25620320--25620374	19	3.3	19	63	36	54	29	3	27	40	1.73
25622539--25622630	17	5.6	17	72	14	59	54	5	0	40	1.23
25622536--25622598	31	2.0	31	87	0	90	52	4	0	42	1.22
25622507--25622626	6	20.2	6	73	13	79	48	3	0	48	1.18
25622537--25622613	17	4.4	17	78	15	77	54	3	0	41	1.19
25628852--25628897	23	2.0	24	82	4	58	43	15	21	19	1.87
25632881--25633020	60	2.4	59	77	8	158	35	7	21	35	1.83
25632966--25633195	30	7.8	29	75	16	170	34	1	23	40	1.63
25632966--25633207	89	2.7	88	77	12	210	34	1	24	39	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25633000--25633195	59	3.3	60	82	12	246	34	1	23	39	1.65
25634964--25635053	6	15.8	6	74	13	66	51	2	1	45	1.21
25634964--25635071	17	6.4	17	77	11	105	50	2	0	45	1.22
25634963--25635022	23	2.7	23	84	2	86	45	1	1	51	1.21
25651852--25651907	18	2.8	19	77	17	51	60	12	3	23	1.47
25651824--25651931	47	2.3	48	82	9	125	56	16	3	23	1.56
25652080--25652196	61	1.9	62	87	5	175	47	3	11	37	1.58
25653801--25654050	101	2.5	100	88	0	356	18	27	17	36	1.94
25653777--25654043	24	10.8	24	68	8	149	18	29	17	34	1.94
25653800--25654050	50	5.0	50	88	2	342	18	27	17	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120