genome.fa.s5.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  115  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34679336--34679376	18	2.3	18	84	12	57	63	4	2	29	1.28
34679337--34679382	19	2.4	19	82	7	58	65	4	2	28	1.23
34691518--34691557	14	2.9	15	85	10	50	35	2	17	45	1.62
34693351--34693445	6	17.0	6	73	14	87	43	0	1	55	1.06
34693358--34693445	17	5.7	16	78	16	96	42	0	1	56	1.06
34693346--34693443	27	3.5	27	83	9	117	40	0	1	58	1.05
34693346--34693427	11	7.4	11	77	14	71	39	0	1	59	1.05
34694464--34694498	16	2.3	15	86	13	54	11	22	25	40	1.88
34695360--34695723	30	12.1	30	84	1	453	34	24	5	35	1.78
34695696--34695892	59	3.4	58	74	2	198	28	30	4	36	1.77
34699088--34699112	9	2.8	9	100	0	50	68	0	0	32	0.90
34699756--34699786	16	1.9	16	93	0	53	41	0	9	48	1.36
34700835--34700870	19	2.0	17	89	10	54	52	5	0	41	1.24
34701542--34701576	13	2.7	13	95	0	61	8	8	45	37	1.65
34702183--34702215	17	1.9	17	93	0	57	42	0	0	57	0.98
34705281--34705336	25	2.2	24	81	12	60	48	0	1	50	1.11
34709357--34709397	20	2.0	22	85	9	59	63	0	0	36	0.95
34711617--34711653	14	2.6	14	91	0	56	18	5	8	67	1.36
34711841--34711866	12	2.2	12	100	0	52	73	0	0	26	0.84
34712660--34712702	13	3.2	13	81	12	50	67	0	2	30	1.03
34721726--34721811	10	9.2	9	71	14	50	26	4	2	66	1.23
34721703--34721793	39	2.4	37	82	10	103	29	5	3	61	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34721735--34721812	27	2.8	28	79	9	81	28	5	2	64	1.28
34733395--34733431	17	2.2	17	90	9	58	75	10	13	0	1.04
34734538--34734627	45	2.0	45	93	2	155	28	22	15	33	1.95
34772893--34772924	14	2.3	14	94	0	55	34	12	12	40	1.81
34786441--34786502	23	2.7	23	82	0	88	48	0	1	50	1.10
34789187--34789224	20	1.9	20	84	10	51	47	10	10	31	1.72
34803945--34803999	26	2.0	29	89	10	89	20	14	20	45	1.85
34805248--34805303	24	2.4	24	85	5	71	30	5	7	57	1.48
34805472--34805535	31	2.0	32	82	14	80	43	3	7	45	1.48
34806250--34806312	25	2.4	25	82	15	74	36	1	0	61	1.05
34806256--34806309	25	2.2	24	90	3	81	38	0	0	61	0.96
34806266--34806306	21	2.1	19	86	9	55	39	0	0	60	0.96
34823118--34823151	9	3.8	9	88	0	50	26	38	2	32	1.71
34826216--34826264	14	3.3	15	76	20	50	63	2	2	32	1.17
34827482--34827524	2	21.5	2	100	0	86	51	0	0	48	1.00
34831179--34831231	26	2.0	26	100	0	106	13	18	22	45	1.84
34837100--34837126	3	9.0	3	100	0	54	66	0	0	33	0.92
34837704--34837735	15	2.1	15	94	0	55	31	15	25	28	1.96
34839369--34839808	220	2.0	221	97	0	828	40	20	10	29	1.86
34844522--34844549	6	4.7	6	100	0	56	0	50	0	50	1.00
34844522--34844604	27	3.0	27	71	10	67	4	46	1	46	1.31
34845484--34845514	6	5.3	6	92	7	55	0	51	32	16	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34847312--34847363	15	3.2	15	73	19	50	44	0	1	53	1.11
34852383--34852427	23	2.0	23	86	0	63	35	20	13	31	1.91
34854929--34854973	20	2.2	22	81	18	62	82	2	8	6	0.93
34855469--34855505	16	2.2	18	85	9	51	29	0	2	67	1.04
34859957--34860015	24	2.5	24	82	0	73	50	10	11	27	1.71
34859969--34860019	24	2.1	24	88	0	75	58	7	9	23	1.56
34861922--34861956	3	11.7	3	100	0	70	31	0	0	68	0.90
34862322--34862365	21	2.1	21	83	8	54	63	2	0	34	1.07
34863107--34863155	15	3.5	14	78	8	55	59	0	2	38	1.09
34864603--34864632	15	1.9	16	93	6	53	63	3	33	0	1.11
34866458--34866506	18	2.7	18	72	12	55	57	0	2	40	1.10
34866550--34866602	25	2.1	25	83	13	65	28	9	3	58	1.47
34870543--34870572	15	1.9	16	93	6	53	56	0	36	6	1.26
34883286--34883320	4	8.8	4	87	0	52	25	2	20	51	1.61
34890417--34890466	18	2.7	19	76	14	52	50	0	2	48	1.12
34891242--34891291	23	2.2	23	82	13	59	54	2	4	40	1.31
34894481--34894672	93	2.1	93	85	5	255	32	10	22	33	1.89
34923489--34923514	4	6.5	4	100	0	52	50	0	26	23	1.50
34930523--34930566	14	3.1	14	80	3	52	68	0	2	29	1.02
34930533--34930579	19	2.5	19	86	6	60	68	2	4	25	1.19
34937225--34937366	71	2.0	71	100	0	284	32	21	14	32	1.93
34953256--34953342	22	4.2	21	76	15	76	3	4	20	71	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34953288--34953332	18	2.4	19	92	3	74	0	4	20	75	0.97
34953288--34953342	19	2.9	18	81	7	65	1	5	20	72	1.13
34953336--34953385	23	2.3	21	86	6	64	8	4	18	70	1.28
34953335--34953479	78	1.9	77	80	13	172	11	6	18	63	1.48
34953568--34953597	15	2.0	15	100	0	60	40	0	0	60	0.97
34954364--34954419	24	2.4	23	82	14	62	62	1	1	33	1.16
34958428--34958476	25	2.1	23	85	11	64	30	8	0	61	1.25
34969080--34969133	20	2.6	20	85	5	63	37	5	5	51	1.49
34970066--34970111	21	2.2	21	84	0	56	50	0	0	50	1.00
34970072--34970112	21	2.0	21	90	0	64	48	0	0	51	1.00
34979848--34979915	34	2.0	34	91	0	109	35	7	23	33	1.83
34999469--34999518	25	2.0	25	84	7	66	38	22	0	40	1.54
35001923--35002103	94	1.9	94	91	0	299	13	23	18	44	1.86
35008180--35008233	19	2.7	20	80	5	65	59	0	0	40	0.98
35012451--35012534	12	7.3	12	68	12	52	69	20	3	7	1.28
35012437--35012534	20	4.4	23	75	14	82	68	20	3	8	1.29
35012437--35012566	44	2.9	45	79	5	138	66	20	4	8	1.36
35012489--35012564	33	2.2	34	84	9	93	67	19	5	7	1.36
35012450--35012573	56	2.2	56	81	2	133	68	18	4	8	1.33
35016258--35016290	8	4.4	8	96	3	52	51	0	0	48	1.00
35016258--35016290	15	2.2	15	89	10	50	51	0	0	48	1.00
35024785--35024823	3	12.7	3	94	5	69	0	35	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35027455--35027495	10	4.1	10	100	0	82	60	0	29	9	1.28
35030514--35030566	21	2.6	19	80	11	52	52	3	0	43	1.19
35030537--35030596	28	2.1	28	81	6	68	50	5	1	43	1.34
35037310--35037377	31	2.2	31	86	5	93	35	16	7	41	1.76
35038855--35038887	2	16.5	2	100	0	66	0	0	48	51	1.00
35041199--35041255	21	2.7	22	83	8	73	33	22	8	35	1.85
35042012--35042179	51	3.3	51	84	3	203	31	22	13	33	1.92
35042108--35042263	85	1.8	85	97	0	294	30	22	13	33	1.92
35048354--35048383	16	1.9	16	93	6	53	53	13	0	33	1.40
35055711--35055914	55	3.6	56	82	7	227	28	21	13	36	1.91
35057663--35057687	2	12.5	2	100	0	50	52	0	0	48	1.00
35073449--35073496	24	2.0	24	88	11	73	58	4	8	29	1.46
35074223--35074263	18	2.2	19	83	12	50	7	17	2	73	1.17
35074262--35074298	19	1.9	19	89	10	58	0	27	8	64	1.21
35082582--35082622	2	20.5	2	100	0	82	0	0	48	51	1.00
35087084--35087123	20	2.0	20	85	0	53	35	7	2	55	1.42
35087080--35087156	26	3.0	26	66	16	70	36	7	2	53	1.44
35093039--35093090	14	3.6	14	78	2	59	63	0	1	34	1.06
35093952--35093994	19	2.3	19	87	0	59	51	0	2	46	1.13
35094259--35094317	31	2.0	30	83	6	75	49	15	5	30	1.66
35102262--35102412	39	3.9	39	88	3	223	26	25	26	21	2.00
35110177--35110252	37	2.1	37	92	0	125	27	17	10	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35110183--35110243	20	3.2	20	64	29	51	31	14	9	44	1.78
35110531--35110657	63	2.0	63	98	0	245	40	8	12	38	1.74
35111720--35111780	24	2.4	24	79	17	70	37	6	0	55	1.26
35114053--35114086	17	2.0	17	94	0	59	47	5	20	26	1.73
35121390--35121450	30	2.0	30	100	0	122	34	22	13	29	1.92
35126809--35126854	21	2.2	21	84	7	58	54	2	6	36	1.39
35129625--35129704	41	1.9	41	82	12	101	53	8	1	36	1.40
35133890--35133937	19	2.5	19	80	10	53	58	6	10	25	1.54
35135349--35135499	53	2.9	53	88	4	227	26	13	17	42	1.86
35136231--35136530	149	2.0	149	88	1	449	27	16	17	39	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120