genome.fa.s5.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  79  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23189936--23189975	19	2.2	18	86	4	53	50	15	0	35	1.44
23191256--23191336	23	3.5	23	81	11	94	40	16	9	33	1.81
23204405--23204444	20	2.0	20	85	9	55	67	2	2	27	1.16
23209428--23209617	42	4.5	42	80	2	193	38	10	25	25	1.87
23209428--23209617	84	2.2	85	82	4	215	38	10	25	25	1.87
23216503--23216616	42	2.7	43	87	4	169	41	10	23	24	1.86
23218209--23218620	78	5.3	77	85	4	528	45	10	11	32	1.75
23218182--23218620	153	2.8	155	85	7	563	45	10	11	32	1.75
23220561--23220594	17	2.0	17	88	0	50	38	20	2	38	1.68
23224676--23224774	31	3.3	31	70	16	100	24	15	13	47	1.80
23225935--23225988	15	3.6	15	75	7	56	40	1	1	55	1.21
23230809--23230922	48	2.4	48	83	5	133	22	7	33	35	1.83
23235854--23235907	28	1.9	28	88	0	81	9	22	12	55	1.65
23236088--23236121	11	2.8	13	82	17	54	50	0	0	50	1.00
23236177--23236221	6	7.3	6	87	5	54	0	57	0	42	0.98
23236177--23236210	13	2.7	13	90	4	52	0	61	0	38	0.96
23236179--23236216	19	2.0	19	89	0	58	0	63	0	36	0.95
23236922--23236960	15	2.7	15	88	7	55	64	2	28	5	1.28
23237820--23237865	24	1.9	24	86	8	67	56	6	0	36	1.25
23243222--23243251	15	2.0	15	93	0	51	56	20	6	16	1.62
23248121--23248464	29	11.7	28	77	9	145	33	4	27	34	1.77
23248150--23248473	88	3.7	88	83	3	357	33	4	26	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23248118--23248454	59	5.7	59	79	6	328	33	4	27	34	1.77
23248742--23248810	32	2.1	32	84	7	86	57	7	11	23	1.58
23248859--23248936	38	2.1	38	95	0	138	24	16	39	19	1.91
23254059--23254315	29	8.8	29	80	8	236	34	4	28	33	1.78
23254012--23254315	59	5.2	58	75	10	201	35	5	26	32	1.80
23254102--23254324	115	1.9	116	84	8	303	34	4	27	34	1.76
23254073--23254315	59	4.2	60	78	12	254	34	4	28	32	1.77
23256167--23256282	6	20.0	6	72	13	91	51	4	1	42	1.31
23256149--23256282	17	7.4	17	72	17	92	50	4	1	43	1.31
23256167--23256282	11	10.0	12	72	13	91	51	4	1	42	1.31
23259771--23259797	14	1.9	14	100	0	54	59	0	40	0	0.98
23260181--23260216	18	2.1	18	89	5	56	41	0	25	33	1.55
23260513--23260549	18	2.1	18	89	0	56	48	0	27	24	1.51
23261324--23261362	2	19.0	2	94	5	69	48	2	0	48	1.15
23268999--23269352	59	6.0	59	83	6	393	36	25	0	37	1.62
23268970--23269422	29	15.5	29	79	9	370	36	25	1	36	1.67
23268975--23269422	59	7.7	57	79	8	340	36	25	1	36	1.66
23281394--23281789	29	13.6	29	77	8	306	36	28	2	33	1.71
23281394--23281789	87	4.5	88	80	4	399	36	28	2	33	1.71
23281746--23281841	30	3.2	30	82	11	92	38	19	2	39	1.64
23281776--23281841	30	2.2	31	89	5	100	37	18	3	40	1.66
23285590--23285658	34	2.0	34	100	0	138	50	23	0	26	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23286666--23286694	5	6.0	5	92	8	51	37	0	0	62	0.96
23287099--23287152	16	3.4	16	82	5	65	48	0	1	50	1.11
23287876--23287927	23	2.3	23	83	6	63	55	0	5	38	1.24
23296381--23296425	23	2.0	23	83	8	58	17	4	8	68	1.32
23296970--23297019	26	2.0	24	84	7	64	48	4	0	48	1.20
23297312--23297367	24	2.2	25	81	12	62	44	1	0	53	1.11
23297309--23297360	15	3.4	15	78	5	59	48	0	0	51	1.00
23299766--23299926	30	5.4	30	84	3	184	40	2	18	38	1.64
23301055--23301104	22	2.4	21	90	9	77	52	6	0	42	1.26
23301771--23301846	18	4.6	16	78	15	66	50	3	0	46	1.20
23301801--23301881	6	14.3	6	71	20	59	51	4	0	43	1.23
23301806--23301857	11	4.8	11	79	13	63	55	1	0	42	1.10
23301770--23301883	17	6.8	17	76	9	108	50	4	0	45	1.21
23302144--23303585	92	15.7	92	97	0	2677	36	16	13	33	1.87
23303515--23303722	45	4.7	45	75	19	206	37	16	12	33	1.87
23303600--23303766	52	3.4	52	69	23	173	37	15	12	34	1.85
23303555--23303774	92	2.3	92	93	5	370	36	15	12	35	1.86
23315556--23315714	59	2.7	58	83	3	185	42	1	16	38	1.60
23315534--23315729	59	3.4	57	79	7	173	40	2	19	38	1.63
23315534--23315729	29	6.7	29	81	6	166	40	2	19	38	1.63
23316849--23316898	22	2.4	21	90	9	77	52	6	0	42	1.26
23317566--23317641	18	4.6	16	78	15	66	50	3	0	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23317596--23317676	6	14.3	6	71	20	59	51	4	0	43	1.23
23317601--23317652	11	4.8	11	79	13	63	55	1	0	42	1.10
23317565--23317684	17	7.1	17	76	9	111	49	4	0	45	1.27
23317951--23318901	92	10.2	92	95	2	1697	37	16	13	33	1.87
23326979--23327138	29	5.4	30	88	3	220	40	3	18	37	1.69
23326979--23327137	59	2.7	58	86	3	212	40	3	18	37	1.69
23326957--23327152	59	3.3	58	81	7	211	38	3	21	36	1.71
23326957--23327152	29	6.7	29	84	6	211	38	3	21	36	1.71
23327876--23327914	2	19.5	2	100	0	78	48	0	0	51	1.00
23328300--23328349	22	2.4	21	90	9	77	52	6	0	42	1.26
23329016--23329139	17	7.3	17	76	11	76	50	4	0	44	1.23
23329047--23329127	6	14.3	6	69	20	50	51	6	0	41	1.27
23329052--23329135	11	7.6	11	68	10	55	52	4	0	42	1.22
23329063--23329092	15	2.0	15	93	0	51	53	3	0	43	1.17
23330300--23330335	18	1.9	19	88	5	56	66	5	2	25	1.27
23330282--23330342	17	3.5	17	74	14	52	60	4	1	32	1.28
23330448--23330486	8	5.0	8	81	6	53	58	2	0	38	1.12
23337374--23337505	69	1.9	67	87	3	192	31	12	12	43	1.78
23337680--23337759	27	3.0	26	74	7	70	25	2	28	43	1.67
23338315--23338540	41	5.6	41	86	1	287	31	19	30	18	1.96
23338272--23338570	82	3.7	80	77	6	225	32	19	27	19	1.96
23338340--23338570	123	1.9	123	84	3	313	30	19	29	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23338660--23338712	26	2.0	26	96	0	97	56	7	0	35	1.28
23338663--23338719	26	2.2	26	90	0	87	59	7	0	33	1.24
23341910--23342147	43	5.5	43	79	2	226	28	15	28	27	1.96
23341910--23342147	129	1.8	129	81	3	300	28	15	28	27	1.96
23347912--23347953	16	2.6	16	100	0	84	26	0	23	50	1.50
23348599--23348633	15	2.4	15	95	4	63	20	20	20	40	1.92
23348818--23348948	43	3.0	43	86	5	131	22	27	23	26	1.99
23348841--23348948	43	2.5	43	93	0	180	20	30	22	26	1.98
23349284--23349435	65	2.3	65	88	0	223	15	24	17	43	1.87
23354869--23354942	33	2.3	31	84	6	94	39	9	6	44	1.63
23354956--23355049	8	11.8	8	72	21	65	52	3	1	43	1.24
23354956--23355035	30	2.6	29	83	13	99	52	3	1	42	1.27
23354954--23355000	22	2.2	20	85	7	67	55	0	0	44	0.99
23355078--23355717	18	36.3	18	65	18	163	46	4	2	46	1.36
23355100--23355845	49	14.1	49	75	16	643	45	5	2	46	1.39
23355069--23355888	161	5.1	157	74	16	560	45	5	2	46	1.39
23355100--23355888	210	3.7	210	95	2	1335	45	5	2	46	1.40
23355551--23355625	26	3.1	24	67	22	66	45	6	0	48	1.29
23355569--23355888	112	2.9	112	97	0	604	45	5	3	45	1.46
23355783--23355829	18	2.6	18	75	0	58	46	2	2	48	1.25
23357393--23357977	292	2.0	292	97	0	1116	32	21	15	30	1.94
23358178--23358520	41	8.4	41	83	5	363	20	26	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23358220--23358518	163	1.8	163	84	4	406	20	27	26	25	1.99
23358178--23358520	123	2.8	124	82	6	421	20	26	27	25	1.99
23358220--23358579	163	2.2	163	79	7	374	20	26	26	26	1.99
23362742--23362774	12	2.8	12	95	0	57	54	12	33	0	1.37
23367360--23367790	59	7.4	59	84	7	479	33	2	29	34	1.71
23367365--23367789	29	14.6	29	69	19	183	34	2	28	34	1.70
23369219--23369274	28	2.0	28	85	0	76	25	3	25	46	1.69
23370218--23370251	7	5.0	7	85	7	52	55	0	44	0	0.99
23370218--23370261	14	3.4	13	84	6	54	59	0	40	0	0.98
23370421--23370451	12	2.6	12	94	0	53	38	0	3	58	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120