genome.fa.s5.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  4  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
796280--796382	31	3.4	29	80	12	93	43	6	12	36	1.69
796311--796382	29	2.4	30	84	9	94	44	6	12	36	1.69
797449--797476	2	14.0	2	100	0	56	50	0	50	0	1.00
798143--798167	6	4.2	6	100	0	50	36	32	16	16	1.90
811850--811982	66	2.0	66	100	0	266	27	21	12	39	1.88
820989--821053	26	2.5	25	73	11	60	35	0	20	44	1.51
826410--826465	29	1.9	29	85	0	76	46	1	12	39	1.52
832358--832429	30	2.4	30	83	2	81	50	18	11	20	1.77
833324--833395	30	2.4	31	83	6	85	22	4	18	55	1.59
842142--842207	24	2.9	23	80	15	82	9	3	18	69	1.28
842142--842202	22	2.6	24	85	10	74	8	3	16	72	1.23
842196--842280	32	2.6	31	78	10	82	10	5	16	67	1.40
842238--842323	44	2.0	44	84	9	113	9	4	18	67	1.36
851672--851753	27	3.1	26	65	18	69	21	19	17	41	1.90
853092--853162	26	2.8	25	70	12	63	46	2	2	47	1.31
857593--857648	18	3.1	19	85	12	73	37	0	5	57	1.22
858316--858348	16	2.1	16	88	5	50	57	0	0	42	0.98
858504--858551	19	2.5	20	79	3	53	37	4	2	56	1.30
870792--870834	20	2.2	20	91	0	68	13	20	11	53	1.71
876131--876165	16	2.1	17	89	5	54	60	0	0	40	0.97
882731--882762	6	5.5	6	96	3	57	50	18	0	31	1.48
887120--887165	20	2.4	20	92	7	78	21	28	0	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887324--887372	3	16.7	3	95	4	91	32	0	0	67	0.91
888926--888993	20	3.3	19	78	12	64	10	5	14	69	1.35
888948--889021	32	2.3	31	80	11	87	8	5	17	68	1.33
889011--889035	12	2.1	12	100	0	50	8	8	16	68	1.38
888948--889039	32	2.9	31	78	12	80	8	6	16	68	1.36
889221--889293	25	2.7	25	83	10	74	31	0	4	64	1.12
900964--901014	22	2.3	22	80	10	59	31	1	1	64	1.15
906987--907014	6	4.7	6	100	0	56	35	50	14	0	1.43
911726--911760	17	2.1	17	100	0	70	22	5	22	48	1.72
925280--925320	17	2.4	17	87	0	55	19	9	24	46	1.80
933724--933749	5	5.2	5	100	0	52	38	0	0	61	0.96
934027--934059	3	11.0	3	100	0	66	33	0	66	0	0.92
936963--937028	21	3.2	21	86	2	80	33	6	22	37	1.79
936991--937029	20	2.0	20	100	0	78	35	0	28	35	1.58
950222--950296	21	3.7	20	75	7	60	56	12	9	22	1.64
950284--950588	55	5.4	55	77	6	288	49	16	8	25	1.74
950371--950581	116	1.8	116	80	2	253	51	15	7	25	1.70
967954--968003	24	2.0	25	85	11	68	34	12	10	44	1.75
968017--968079	30	2.2	30	88	5	94	58	11	6	23	1.55
968356--968403	23	2.1	24	88	7	73	27	10	6	56	1.57
978888--978912	3	8.3	3	100	0	50	32	0	0	68	0.90
978928--978957	15	2.0	15	100	0	60	40	0	13	46	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980358--980383	9	2.9	9	100	0	52	11	7	23	57	1.59
989729--989777	16	3.1	16	81	16	57	44	2	0	53	1.12
996342--996379	14	2.7	15	80	12	53	63	0	0	36	0.95
998503--998567	18	3.6	19	82	12	66	6	12	4	76	1.12
998503--998533	9	3.4	9	100	0	62	0	9	9	80	0.90
998546--998580	13	2.8	12	87	8	52	8	11	2	77	1.10
999494--999525	12	2.7	12	95	0	55	75	6	0	18	1.01
999494--999541	18	2.7	18	80	6	53	70	4	0	25	1.04
999516--999541	6	4.3	6	100	0	52	65	0	0	34	0.93
1008771--1008828	10	5.7	10	74	11	55	58	3	1	36	1.25
1015549--1015596	21	2.3	21	86	10	64	54	0	6	39	1.26
1015907--1015958	16	3.1	17	86	8	63	30	1	0	67	1.02
1015907--1015958	17	3.1	16	84	13	61	30	1	0	67	1.02
1015914--1015963	25	2.0	24	81	11	57	32	2	0	66	1.03
1021119--1021151	16	2.0	17	88	5	50	18	9	0	72	1.10
1021326--1021361	13	2.8	13	100	0	72	19	25	8	47	1.77
1023567--1023638	37	1.9	37	100	0	144	50	11	0	38	1.38
1023574--1023636	19	3.4	19	74	12	76	53	9	0	36	1.33
1044928--1044974	24	2.0	24	95	0	85	27	25	17	29	1.97
1058712--1058736	2	12.5	2	100	0	50	48	0	52	0	1.00
1059267--1059310	23	1.9	23	85	0	61	59	6	6	27	1.49
1060070--1060103	15	2.3	15	89	0	50	0	8	2	88	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1081066--1081090	12	2.1	12	100	0	50	24	8	0	68	1.16
1081119--1081187	31	2.2	33	79	10	81	49	4	1	44	1.31
1081135--1081195	32	1.9	31	83	9	79	50	1	0	47	1.10
1085486--1085531	25	1.9	25	82	8	60	45	2	2	50	1.26
1086923--1086963	13	3.3	13	76	13	50	56	0	43	0	0.99
1086919--1086963	24	1.9	23	86	4	63	55	0	44	0	0.99
1094118--1094281	29	5.7	28	80	7	168	36	1	22	39	1.65
1094118--1094281	57	2.9	57	80	7	181	36	1	22	39	1.65
1094118--1094301	58	3.2	57	78	9	185	37	1	21	39	1.63
1095693--1095726	6	5.7	6	89	0	50	55	2	0	41	1.15
1108124--1108304	30	6.2	29	77	8	152	35	2	24	37	1.70
1108110--1108305	29	6.7	30	76	5	168	36	3	25	35	1.72
1108160--1108304	59	2.4	61	82	4	172	36	2	24	37	1.67
1108110--1108311	89	2.3	87	84	5	246	37	2	24	34	1.71
1109199--1109243	21	2.1	21	84	8	56	60	2	2	35	1.22
1111158--1111191	12	2.8	12	90	0	50	32	23	44	0	1.54
1114385--1114509	62	2.0	62	93	0	214	35	4	31	28	1.78
1114528--1114596	27	2.5	27	86	9	95	24	1	2	71	1.09
1114565--1114638	20	3.8	19	74	22	64	25	1	5	67	1.20
1114698--1114748	9	5.6	9	77	11	50	37	3	0	58	1.16
1114699--1114739	20	2.0	21	85	4	57	36	4	0	58	1.20
1114783--1114895	44	2.6	45	80	13	128	27	1	3	67	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114815--1114888	18	4.1	18	71	11	62	28	1	2	67	1.12
1114858--1114903	10	4.5	11	79	17	55	34	0	2	63	1.07
1114811--1114903	20	4.9	20	74	15	74	29	1	3	66	1.14
1114817--1114895	17	4.4	18	72	21	69	26	1	3	68	1.14
1116412--1116527	58	2.0	58	100	0	232	43	15	12	29	1.83
1122408--1122433	2	13.0	2	100	0	52	50	0	0	50	1.00
1128054--1128121	16	4.4	16	73	12	52	20	5	22	51	1.68
1128076--1128127	15	3.3	15	76	10	50	13	5	25	55	1.60
1128130--1128182	28	1.9	27	84	3	70	15	3	24	56	1.55
1130338--1130408	23	3.0	23	78	10	81	43	19	11	25	1.84
1134625--1134669	23	2.0	23	86	0	63	31	13	20	35	1.91
1141334--1141715	191	2.0	192	91	1	615	20	14	20	43	1.87
1159439--1159463	2	12.5	2	100	0	50	0	0	48	52	1.00
1162227--1162274	24	2.0	24	84	8	62	27	4	8	60	1.44
1166632--1166675	17	2.6	18	85	10	65	36	0	4	59	1.18
1166638--1166723	11	7.7	11	69	18	54	43	2	2	52	1.26
1166668--1166704	17	2.2	17	95	0	65	37	2	5	54	1.38
1166641--1166706	6	11.7	6	76	12	50	39	1	3	56	1.24
1167458--1167515	26	2.3	25	82	11	66	53	0	0	46	1.00
1168664--1168771	29	3.8	28	79	10	119	37	28	2	30	1.71
1168753--1168905	29	5.2	29	69	23	95	35	27	2	34	1.71
1168663--1169006	59	5.9	59	83	6	355	33	29	3	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1168704--1169006	118	2.6	117	84	7	393	31	30	3	34	1.76
1168695--1168890	29	6.7	28	70	21	86	34	29	2	33	1.71
1168762--1168977	29	7.3	30	64	18	87	31	30	4	34	1.77
1171233--1171279	22	2.1	23	84	11	62	74	4	0	21	0.99
1173773--1174009	80	3.0	80	99	0	465	31	17	16	34	1.92
1176239--1176268	3	10.3	3	92	7	53	70	0	0	30	0.88
1177316--1177361	7	6.7	7	82	5	58	36	26	21	15	1.93
1177313--1177354	20	2.1	20	95	0	75	40	23	21	14	1.90
1177467--1177532	21	3.1	21	86	2	96	24	0	31	43	1.54
1177909--1177974	12	5.6	11	74	16	53	71	0	22	6	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120