genome.fa.s5.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  11  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3082029--3082082	28	1.9	28	81	7	65	16	46	12	24	1.82
3082485--3082577	16	6.3	15	71	13	59	53	1	2	43	1.19
3082496--3082576	19	4.3	19	73	13	69	55	1	1	41	1.15
3082485--3082577	12	7.7	12	73	14	66	53	1	2	43	1.19
3082496--3082576	3	25.7	3	73	9	54	55	1	1	41	1.15
3083607--3083685	29	2.7	29	88	7	115	41	17	2	37	1.63
3083666--3083974	29	10.4	29	70	20	180	33	28	1	35	1.69
3083958--3084020	28	2.2	29	86	8	85	31	26	11	30	1.91
3083665--3083974	59	5.3	59	86	5	421	33	28	1	35	1.69
3095868--3096253	76	5.0	76	92	4	643	31	15	18	33	1.93
3095868--3096350	153	3.1	154	89	7	704	32	15	18	32	1.93
3096183--3096447	92	2.9	92	88	2	363	33	15	17	33	1.92
3096699--3096771	22	3.3	22	80	3	65	35	2	1	60	1.20
3096712--3096775	6	11.3	6	77	11	64	35	1	0	62	1.05
3096710--3096778	5	12.6	5	76	14	57	39	1	0	59	1.06
3096723--3096793	11	6.4	11	75	15	56	42	1	0	56	1.08
3096710--3096770	17	3.7	15	76	19	68	37	1	0	60	1.07
3096709--3096777	11	6.2	11	72	14	61	40	1	0	57	1.07
3096820--3096893	37	2.0	38	84	10	100	40	33	10	14	1.81
3097018--3097071	28	1.9	28	81	7	65	18	46	11	24	1.81
3097474--3097566	16	6.3	15	71	13	59	53	1	2	43	1.19
3097485--3097565	19	4.3	19	73	13	69	55	1	1	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3097474--3097566	12	7.7	12	73	14	66	53	1	2	43	1.19
3097485--3097565	3	25.7	3	73	9	54	55	1	1	41	1.15
3098578--3098662	29	2.9	29	84	6	109	38	20	3	37	1.70
3098585--3098885	59	5.1	58	85	4	254	33	26	2	36	1.72
3098627--3098885	30	8.8	29	68	17	124	33	27	2	36	1.70
3098662--3098914	118	2.1	118	84	4	332	32	28	3	35	1.74
3098632--3098885	59	4.3	59	87	3	341	33	28	2	36	1.70
3110723--3111262	76	7.0	76	95	2	906	32	15	18	33	1.93
3111192--3111456	92	2.9	92	89	1	370	33	15	17	33	1.92
3111719--3111787	5	12.6	5	79	14	57	43	1	1	53	1.18
3111719--3111783	17	4.0	16	76	9	53	43	1	1	53	1.19
3111719--3111787	11	6.3	11	78	5	77	43	1	1	53	1.18
3111718--3111786	6	12.3	6	82	11	67	44	1	1	52	1.19
3111719--3111803	22	3.9	21	77	11	73	45	1	1	51	1.16
3112483--3112574	13	6.3	15	67	17	50	54	5	1	39	1.31
3112506--3112574	16	4.5	16	73	14	65	56	5	0	37	1.23
3112494--3112571	19	3.9	19	73	14	59	55	5	0	39	1.22
3112523--3112587	29	2.2	29	78	5	69	56	9	0	33	1.31
3112494--3112574	3	25.7	3	73	9	54	55	4	0	39	1.21
3113606--3113893	29	9.9	28	71	19	164	33	28	2	36	1.69
3113615--3113930	59	5.4	59	87	3	415	31	29	3	35	1.73
3113640--3113905	29	9.2	28	73	20	208	31	29	2	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3113913--3113967	28	2.0	28	92	3	94	27	32	12	27	1.93
3113914--3113977	27	2.3	28	86	7	87	25	31	12	31	1.92
3115336--3115383	26	2.0	24	84	15	64	37	8	8	45	1.64
3115332--3115383	25	2.0	26	85	3	70	40	7	7	44	1.62
3115574--3115642	37	1.9	35	82	11	86	56	2	2	37	1.29
3115490--3115624	68	2.0	69	86	1	191	51	5	2	40	1.39
3120330--3120566	108	2.2	108	83	6	293	23	19	21	35	1.96
3126222--3126442	42	5.2	42	92	4	345	27	26	9	35	1.88
3126222--3126442	86	2.6	84	90	5	345	27	26	9	35	1.88
3126177--3126437	128	2.1	125	87	3	371	27	26	10	35	1.89
3130630--3130664	17	2.1	17	100	0	70	22	11	22	42	1.85
3131459--3131518	23	2.6	23	73	5	59	45	3	5	46	1.41
3131676--3131709	12	2.8	12	86	4	50	29	0	0	70	0.87
3136386--3136428	20	2.1	21	91	4	70	41	41	0	16	1.48
3136807--3136834	12	2.3	12	100	0	56	35	35	14	14	1.86
3141880--3141939	17	3.4	17	74	17	68	58	5	3	33	1.36
3142973--3143597	311	2.0	311	100	0	1250	27	20	21	31	1.98
3151629--3151733	17	5.5	17	70	20	66	35	3	6	54	1.45
3151701--3151741	17	2.4	17	88	8	57	46	0	2	51	1.14
3153506--3153860	30	12.1	29	67	14	149	34	27	3	34	1.74
3153528--3153857	29	11.2	28	66	17	145	34	26	3	35	1.73
3153578--3153863	59	4.9	59	87	6	402	34	27	3	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3154362--3154392	2	15.5	2	100	0	62	51	0	0	48	1.00
3155771--3155828	30	1.9	31	82	10	75	60	5	1	32	1.29
3156615--3156639	13	1.9	13	100	0	50	64	0	0	36	0.94
3157094--3157146	5	10.2	5	77	22	56	37	0	0	62	0.96
3157102--3157148	8	6.0	8	97	2	87	38	0	0	61	0.96
3157466--3157492	12	2.2	12	100	0	54	22	0	0	77	0.76
3160907--3160948	15	2.9	15	82	7	50	59	4	9	26	1.48
3169186--3169233	6	8.0	6	100	0	96	33	0	0	66	0.92
3176492--3176574	42	2.0	42	86	6	116	40	10	4	43	1.61
3180898--3181036	42	3.3	42	73	0	134	27	22	24	25	2.00
3190381--3190429	25	2.0	25	84	8	64	40	2	2	55	1.23
3192707--3192773	31	2.2	29	81	5	71	29	5	14	49	1.68
3192728--3192786	29	2.0	30	86	3	84	30	5	13	50	1.63
3192929--3193008	31	2.7	30	75	9	74	45	11	7	36	1.68
3193228--3193297	29	2.3	30	82	4	88	35	7	12	44	1.70
3194339--3194422	31	2.8	30	82	5	107	48	10	3	36	1.55
3195089--3195812	361	2.0	361	98	0	1385	34	19	18	28	1.95
3197441--3197480	21	1.9	21	94	0	71	22	5	10	62	1.46
3197354--3197517	70	2.3	70	93	0	274	34	9	12	43	1.74
3197858--3197919	20	3.2	19	82	8	63	38	1	6	53	1.37
3197865--3197924	20	3.2	19	81	6	68	36	1	6	55	1.36
3205257--3205282	7	3.7	7	100	0	52	88	0	0	11	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3206525--3206741	30	7.3	30	79	7	190	36	4	19	38	1.73
3206567--3206737	59	2.9	58	81	6	191	34	2	21	41	1.66
3206526--3206751	89	2.5	89	80	5	258	37	4	18	38	1.72
3208382--3208532	40	3.8	40	83	6	137	25	17	22	33	1.96
3208613--3208756	50	2.9	49	79	6	155	20	25	18	36	1.95
3209561--3209660	50	2.0	50	82	3	121	12	26	15	47	1.79
3214618--3214671	21	2.6	20	83	13	65	31	12	25	29	1.93
3216469--3216588	58	2.1	58	93	3	206	30	0	21	47	1.51
3216766--3216854	35	2.5	35	87	1	124	50	15	7	25	1.71
3223185--3223369	29	6.3	28	73	15	108	37	3	20	38	1.70
3223229--3223369	29	4.8	29	78	6	140	36	2	21	39	1.65
3223185--3223365	59	3.1	58	77	6	186	36	3	20	39	1.69
3236244--3236291	22	2.1	23	84	3	62	41	6	4	47	1.48
3243584--3243613	8	3.8	8	100	0	60	10	0	0	90	0.47
3281557--3281623	32	2.1	33	94	2	118	32	13	8	44	1.75
3286312--3286411	18	5.6	17	80	8	110	37	0	6	57	1.24
3286346--3286424	6	13.3	6	72	7	63	43	0	3	53	1.19
3288498--3288559	28	2.2	28	85	2	79	32	27	8	32	1.86
3293720--3293783	5	12.6	5	78	15	69	79	0	20	0	0.73
3293715--3293785	25	2.8	25	78	21	85	78	0	21	0	0.74
3293715--3293783	13	5.4	13	77	11	63	79	0	20	0	0.73
3293715--3293787	32	2.2	32	83	7	85	78	0	21	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3294986--3295170	50	3.7	50	74	7	151	41	21	23	14	1.89
3294996--3295285	100	2.9	99	86	3	377	38	22	24	14	1.92
3295022--3295269	50	5.0	49	70	7	176	38	21	25	15	1.92
3295901--3296426	206	2.6	204	87	3	774	35	20	23	20	1.96
3296778--3296877	18	5.6	17	80	8	110	37	0	6	57	1.24
3296812--3296890	6	13.3	6	72	7	63	43	0	3	53	1.19
3299759--3300221	59	7.9	58	86	4	549	34	3	30	31	1.74
3299849--3300000	29	5.2	29	68	18	75	34	3	31	30	1.74
3300021--3300114	30	3.2	30	69	19	88	38	3	25	32	1.72
3300022--3300118	31	3.2	31	69	19	96	38	3	26	31	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120