genome.fa.s5.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  43  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11839875--11839921	11	4.3	11	87	12	62	0	17	0	82	0.66
11839871--11839921	21	2.4	22	87	12	72	0	17	0	82	0.67
11846391--11846421	15	2.1	15	100	0	62	12	25	12	48	1.77
11858438--11859832	216	6.5	216	82	3	1566	28	16	13	40	1.87
11858438--11859832	425	3.3	423	83	4	1599	28	16	13	40	1.87
11860928--11862065	215	5.3	216	83	2	1349	27	17	14	41	1.87
11862065--11863922	216	8.7	216	81	5	2047	27	16	14	41	1.87
11860928--11863922	646	4.7	643	81	5	3251	27	16	14	41	1.87
11860928--11863922	430	7.0	429	80	5	3144	27	16	14	41	1.87
11863643--11864249	335	1.8	337	81	6	766	25	17	14	42	1.88
11863371--11864462	551	2.0	551	81	6	1309	26	16	14	42	1.87
11863922--11866593	215	12.5	216	77	7	2286	28	16	13	41	1.87
11863922--11866593	431	6.2	431	77	7	2415	28	16	13	41	1.87
11862944--11864896	982	2.0	985	82	5	2425	27	16	14	41	1.87
11864833--11865209	196	1.9	195	82	7	478	30	12	15	41	1.85
11865026--11866593	435	3.6	426	79	6	1596	28	16	13	41	1.87
11866468--11866715	128	1.9	129	84	2	329	30	15	11	42	1.82
11866597--11868315	216	8.0	215	80	5	1697	29	17	12	40	1.86
11866597--11868315	433	4.0	434	81	5	1856	29	17	12	40	1.86
11868314--11887445	422	45.4	421	77	9	16738	38	14	18	27	1.90
11868381--11894290	207	122.4	208	74	12	17103	38	14	18	27	1.90
11873711--11873787	40	1.9	40	94	0	136	28	27	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11879135--11887445	208	39.6	215	77	9	7237	38	14	19	27	1.90
11882541--11882898	187	1.9	191	87	5	532	40	13	17	28	1.88
11886634--11887413	220	3.8	193	75	13	563	39	12	19	28	1.88
11886859--11887445	220	2.8	207	80	10	621	39	13	18	28	1.89
11887461--11888649	214	5.6	214	81	7	1281	39	14	18	27	1.90
11887450--11888649	421	2.8	418	81	8	1378	39	14	18	27	1.90
11888657--11894290	215	26.5	215	81	7	5928	38	14	18	28	1.90
11888658--11894290	422	13.3	423	81	7	5869	38	14	18	28	1.90
11890591--11894290	421	8.7	422	80	7	3847	38	14	18	28	1.90
11894151--11894455	165	1.8	165	89	2	479	40	13	16	29	1.87
11894294--11896117	208	8.7	207	79	7	1747	38	13	18	28	1.89
11894294--11896117	422	4.4	423	80	6	1911	38	13	18	28	1.89
11895618--11896116	198	2.5	199	85	3	624	39	13	18	28	1.89
11896405--11897166	216	3.6	215	82	4	897	39	14	19	27	1.90
11898111--11898173	32	2.0	32	90	0	99	38	17	11	33	1.85
11898219--11898317	39	2.5	39	93	0	171	53	16	5	25	1.63
11901341--11901410	28	2.5	29	76	17	69	2	25	1	70	1.10
11904537--11908452	215	18.5	216	80	8	4014	39	14	17	27	1.90
11905561--11908452	208	13.7	214	80	7	3126	39	15	17	27	1.90
11905561--11908452	634	4.5	634	85	5	3589	39	15	17	27	1.90
11911126--11911169	22	2.0	22	83	12	56	61	11	0	27	1.30
11911474--11944983	215	156.5	214	71	14	12524	39	14	18	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11911480--11944983	423	78.3	423	71	14	15164	39	14	18	28	1.90
11921450--11921591	50	2.8	50	71	8	117	36	11	14	37	1.83
11921800--11921832	17	1.9	17	88	11	50	66	6	0	27	1.15
11921980--11944983	638	35.8	636	73	12	11223	39	14	18	28	1.90
11925906--11925938	17	1.9	17	88	11	50	27	0	6	66	1.15
11926129--11926272	50	2.8	50	77	8	148	36	14	12	36	1.84
11927410--11944983	215	82.3	213	76	10	12990	39	14	18	27	1.89
11931476--11934498	429	7.1	423	80	8	2903	39	14	18	27	1.89
11935890--11950722	215	68.8	216	76	10	10040	39	14	17	27	1.89
11946232--11946301	30	2.3	30	90	0	104	22	20	27	30	1.98
11946391--11950709	216	20.1	216	86	3	5542	40	15	16	26	1.88
11946391--11950709	861	5.0	860	88	3	5564	40	15	16	26	1.88
11955278--11955304	12	2.2	12	100	0	54	22	14	7	55	1.64
11956477--11956523	24	2.0	24	95	0	85	23	12	6	57	1.58
11956480--11956534	24	2.3	24	87	6	76	25	16	7	50	1.70
11959533--11959559	14	1.9	14	100	0	54	51	7	3	37	1.48
11960342--11960381	20	2.2	20	86	13	59	37	2	0	60	1.11
11964969--11965056	29	3.1	28	76	10	99	30	20	5	43	1.75
11966917--11966957	16	2.6	17	85	11	52	56	0	0	43	0.99
11968510--11968544	18	1.9	18	88	0	52	45	14	40	0	1.45
11971901--11971988	23	3.8	23	77	4	88	34	11	13	40	1.81
11974183--11974211	13	2.1	14	93	6	51	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11974165--11974210	24	2.0	23	83	12	58	54	0	0	45	0.99
11974137--11974257	44	2.7	45	83	6	138	52	2	3	42	1.31
11982353--11982429	31	2.5	31	95	0	136	29	19	6	44	1.76
11982341--11982449	31	3.6	30	83	6	130	31	16	8	44	1.77
11984807--11984896	39	2.3	39	84	3	110	33	20	22	24	1.97
12006298--12006341	21	2.1	21	86	0	61	29	15	22	31	1.95
12007205--12007248	23	2.0	22	86	4	61	38	0	15	45	1.47
12009311--12009357	23	2.0	23	91	0	76	36	10	27	25	1.89
12014798--12014841	22	2.0	22	86	0	61	18	34	18	29	1.94
12030896--12030945	21	2.4	21	83	6	66	48	8	2	42	1.44
12032700--12032874	30	5.9	29	82	4	190	42	5	18	33	1.73
12032701--12032879	60	3.0	58	82	5	216	43	5	18	33	1.72
12034491--12035134	78	8.3	78	86	5	835	26	16	23	33	1.96
12034508--12035134	234	2.7	233	88	3	926	25	17	22	33	1.96
12047514--12047719	59	3.5	57	80	7	207	39	4	19	35	1.73
12047530--12047745	30	7.3	30	81	5	201	40	5	18	35	1.75
12047530--12047730	89	2.2	89	82	4	226	39	5	19	34	1.75
12047704--12047774	30	2.4	30	85	0	88	45	8	12	33	1.73
12047619--12047774	60	2.6	61	81	10	164	42	5	17	33	1.73
12053286--12053337	21	2.5	21	78	6	61	30	26	15	26	1.96
12054058--12054139	28	3.0	27	85	5	110	26	26	13	32	1.93
12054279--12054399	60	2.0	60	100	0	242	19	26	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12058845--12058872	2	14.0	2	100	0	56	50	0	0	50	1.00
12059368--12059447	23	3.4	23	81	5	81	31	13	16	38	1.87
12059449--12059499	15	3.4	15	71	10	50	54	17	7	19	1.67
12059529--12059569	20	2.0	20	85	0	55	68	14	4	12	1.36
12060761--12060815	16	3.4	16	82	5	58	65	1	1	30	1.13
12068778--12068862	42	2.0	42	90	0	134	56	7	15	21	1.62
12069215--12069479	132	2.0	131	93	2	451	33	12	7	46	1.70
12070913--12070955	13	3.2	13	86	3	59	25	4	13	55	1.58
12070913--12070968	26	2.1	27	83	3	69	28	5	14	51	1.64
12073431--12073486	22	2.5	24	81	18	77	69	7	3	19	1.27
12073431--12073488	21	2.7	22	78	7	66	70	6	3	18	1.24
12073583--12073622	8	4.8	8	88	11	62	72	0	0	27	0.85
12073799--12073872	21	3.3	22	71	21	64	67	4	5	22	1.28
12073841--12073901	29	2.1	29	85	11	81	62	3	9	24	1.41
12074805--12074872	26	2.6	26	97	2	127	42	8	16	32	1.79
12087519--12087669	42	3.6	42	81	3	155	22	23	21	31	1.98
12088849--12088896	24	2.0	24	95	0	87	18	20	18	41	1.90
12092461--12092519	21	2.8	22	74	5	59	35	27	10	27	1.89
12105415--12105857	216	2.0	223	94	5	787	31	20	12	36	1.89
12107660--12108097	192	2.3	194	80	5	469	27	18	27	26	1.98
12114233--12114271	18	2.2	18	95	4	71	33	5	25	35	1.78
12117425--12117472	24	2.0	24	92	8	80	20	20	18	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12141144--12141188	21	2.1	22	83	4	56	26	4	6	62	1.39
12146785--12146814	15	2.0	15	93	0	51	56	0	0	43	0.99
12146829--12146859	16	1.9	16	100	0	62	48	32	0	19	1.49
12147441--12147510	36	1.9	36	94	0	122	37	12	17	32	1.87
12147887--12147925	18	2.2	18	90	4	62	38	7	12	41	1.72
12155087--12156083	485	2.1	485	98	0	1935	36	18	9	35	1.83
12156313--12156449	51	2.7	50	79	5	150	34	20	19	25	1.96
12157919--12157971	27	2.0	27	82	14	65	22	7	1	67	1.25
12159508--12159549	21	2.0	21	86	13	61	47	0	9	42	1.36
12159468--12159552	19	4.8	17	73	23	61	51	0	7	41	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120