genome.fa.s5.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  64  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18925168--18925210	3	14.7	3	83	13	54	0	39	0	60	0.97
18926802--18926881	39	2.1	39	83	4	99	21	17	27	33	1.96
18926864--18926966	46	2.3	45	87	1	143	24	17	27	31	1.97
18927029--18927876	123	6.9	122	86	1	1029	22	21	16	39	1.92
18927772--18927951	77	2.4	76	87	2	254	22	22	18	36	1.95
18928195--18928458	49	5.4	49	72	3	210	20	26	17	35	1.95
18928248--18928429	97	1.9	97	86	2	258	19	27	19	34	1.96
18928350--18928488	49	2.8	49	84	0	143	20	30	17	32	1.95
18929031--18929072	21	2.0	21	95	0	75	38	19	11	30	1.88
18931221--18931265	21	2.1	21	87	0	63	55	6	2	35	1.38
18933912--18933965	26	2.1	26	86	6	74	33	20	7	38	1.80
18940220--18940648	23	18.7	23	85	0	588	33	5	14	46	1.66
18941087--18941154	32	2.1	32	97	0	127	14	13	35	36	1.85
18945002--18945078	3	25.7	3	82	5	93	63	0	32	3	1.12
18953730--18953774	3	14.7	3	84	13	56	60	0	40	0	0.97
18953730--18953774	25	1.9	24	86	13	67	60	0	40	0	0.97
18957140--18957205	33	2.0	33	85	8	91	36	7	21	34	1.82
18957523--18957564	21	2.0	21	90	0	66	35	14	14	35	1.86
18959657--18959717	17	3.7	16	68	14	52	60	1	0	37	1.07
18959661--18959760	33	3.1	33	75	13	102	57	2	2	39	1.22
18962368--18962421	26	2.1	26	86	6	74	33	20	7	38	1.80
18972948--18973025	36	2.2	36	90	0	120	33	26	12	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18973095--18973438	23	15.0	23	85	0	463	45	15	5	32	1.70
18973095--18973606	46	11.3	46	83	4	594	46	14	5	33	1.69
18973095--18973606	69	7.6	69	80	3	601	46	14	5	33	1.69
18973402--18973475	37	2.0	37	86	0	103	50	14	4	31	1.62
18973440--18973608	23	7.3	23	80	0	194	47	11	5	34	1.65
18973379--18973498	60	2.0	60	85	0	159	46	14	6	32	1.70
18973310--18973567	129	2.0	129	90	0	408	46	13	6	33	1.70
18973439--18973632	69	2.7	69	79	4	208	47	12	5	34	1.65
18981253--18981306	26	2.1	26	86	6	74	38	7	20	33	1.80
18983926--18984016	34	2.8	33	82	12	91	37	2	2	58	1.23
18983985--18984061	21	3.9	21	76	20	69	38	0	6	54	1.26
18986113--18986154	21	2.0	21	90	0	66	35	14	14	35	1.86
18986477--18986539	33	1.9	32	84	9	83	36	20	6	36	1.78
18989914--18989958	3	14.7	3	84	13	56	0	40	0	60	0.97
18989915--18989958	22	2.0	22	86	8	63	0	40	0	59	0.98
18993610--18993650	22	1.9	22	85	5	57	58	2	0	39	1.11
18998610--18998685	3	25.3	3	85	5	100	2	32	0	64	1.07
19005802--19005861	21	2.9	21	87	0	93	35	20	18	26	1.95
19005877--19005911	3	11.7	3	88	11	54	0	37	0	62	0.95
19015408--19015457	12	4.2	12	77	10	57	62	0	36	2	1.07
19019537--19019588	19	2.7	19	84	0	68	1	21	0	76	0.87
19019537--19019588	10	5.4	10	77	9	54	1	21	0	76	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19032260--19032299	11	3.7	11	83	6	55	57	0	0	42	0.98
19035927--19035978	22	2.4	21	72	12	52	28	5	0	65	1.16
19035960--19036036	35	2.2	35	81	9	86	44	0	1	54	1.08
19036004--19036051	15	3.1	15	88	5	69	45	0	0	54	0.99
19036004--19036057	8	6.8	8	91	6	74	48	0	0	51	1.00
19039370--19039395	13	2.0	13	100	0	52	15	38	15	30	1.88
19052580--19052619	11	3.7	11	83	6	55	57	0	0	42	0.98
19056247--19056298	22	2.4	21	72	12	52	28	5	0	65	1.16
19056324--19056378	8	6.8	8	95	2	83	47	0	0	52	1.00
19066678--19066868	41	4.7	41	76	1	186	21	27	18	31	1.97
19066867--19066944	41	1.9	41	86	0	111	20	23	17	38	1.93
19066868--19066968	41	2.5	41	81	0	103	22	24	16	35	1.95
19066960--19067053	40	2.4	39	89	3	145	18	22	22	37	1.94
19069569--19069619	18	2.8	17	85	11	66	43	0	0	56	0.99
19069557--19069620	32	2.0	32	84	9	85	45	0	0	54	0.99
19069577--19069619	21	2.0	21	86	0	59	39	0	0	60	0.97
19073283--19073328	24	1.9	25	86	8	69	58	6	4	30	1.43
19075328--19075373	6	8.0	6	87	7	53	78	2	0	19	0.86
19075336--19075385	5	9.6	5	85	12	57	78	2	2	18	0.95
19075325--19075389	27	2.5	27	83	11	82	75	3	1	20	1.02
19075403--19075451	11	4.4	11	84	5	71	20	8	0	71	1.11
19075403--19075454	23	2.3	22	90	3	77	25	7	0	67	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19079394--19079439	24	1.9	25	86	8	69	58	6	4	30	1.43
19089227--19089274	23	2.1	22	85	11	62	52	16	8	22	1.71
19090928--19090961	3	11.7	3	93	6	61	67	0	0	32	0.91
19096308--19096345	18	2.2	18	90	9	62	2	13	7	76	1.11
19099698--19099760	17	3.6	17	80	8	65	46	12	20	20	1.83
19109097--19109723	23	27.0	23	84	2	779	33	5	14	47	1.66
19116427--19116452	12	2.2	12	100	0	52	15	0	15	69	1.20
19124881--19124947	16	4.0	16	72	24	57	40	4	2	52	1.37
19124898--19124982	19	4.5	19	74	11	68	41	2	3	52	1.31
19124933--19124980	20	2.4	21	86	6	64	45	2	2	50	1.25
19124933--19124980	21	2.4	20	86	6	62	45	2	2	50	1.25
19125423--19125482	31	1.9	31	93	0	102	28	15	6	50	1.69
19126531--19126927	129	3.1	129	93	0	661	18	29	26	25	1.98
19126529--19126927	43	9.3	43	87	1	566	18	29	26	25	1.98
19127242--19127279	11	3.5	11	80	20	53	0	47	23	28	1.52
19127228--19127280	21	2.5	21	93	0	88	0	47	20	32	1.51
19127276--19127423	66	2.2	66	86	2	208	16	24	15	43	1.86
19132823--19132952	26	5.0	26	77	14	142	45	5	3	46	1.41
19133027--19133225	49	4.1	49	89	1	301	44	5	1	48	1.35
19133017--19134490	18	85.8	18	63	19	122	45	5	2	46	1.39
19133023--19133213	97	2.0	97	91	0	310	45	4	1	48	1.33
19133044--19134381	23	55.1	25	63	25	218	45	6	1	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19132824--19133435	258	2.3	258	89	4	899	45	5	2	46	1.40
19133103--19134260	210	5.6	210	91	7	1758	45	5	2	46	1.39
19133328--19133555	49	4.7	49	73	12	193	45	5	2	46	1.39
19133538--19134139	49	12.4	49	72	14	315	45	5	2	46	1.39
19133704--19134478	178	4.4	172	81	12	719	45	6	1	46	1.38
19133904--19134250	31	10.5	36	68	14	160	46	6	0	47	1.29
19133932--19134019	8	10.4	9	69	19	57	47	2	0	50	1.13
19134048--19134346	31	11.4	28	63	27	104	46	7	0	46	1.33
19134128--19134315	49	3.8	49	97	0	358	45	6	0	46	1.34
19134097--19134346	80	3.1	80	81	7	226	46	6	0	46	1.32
19134226--19134402	80	2.2	80	93	1	302	45	6	0	46	1.33
19133705--19134389	227	3.0	226	84	7	820	45	6	1	47	1.36
19139006--19139373	41	8.9	41	81	5	400	22	27	27	22	1.99
19138948--19139412	82	5.6	82	80	6	433	21	26	26	24	2.00
19139635--19139669	17	2.1	17	100	0	70	42	11	5	40	1.65
19144389--19144426	18	2.1	18	90	0	58	50	5	10	34	1.59
19145505--19145537	17	1.9	17	93	0	57	33	39	6	21	1.78
19147698--19147736	15	2.4	17	87	8	55	0	17	0	82	0.68
19152263--19152305	17	2.5	17	80	0	50	62	11	11	13	1.54
19152706--19152758	15	3.5	15	76	19	56	1	30	1	66	1.13
19159957--19159996	21	1.9	21	89	0	62	32	17	20	30	1.95
19160536--19160668	52	2.6	52	78	4	142	35	24	14	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19166588--19166645	21	2.6	23	81	8	57	34	29	10	25	1.89
19167328--19167519	52	3.7	52	92	0	276	33	25	16	24	1.95
19170926--19171143	117	1.9	117	99	0	427	35	11	25	27	1.90
19171588--19171641	27	2.0	27	96	0	99	27	27	22	22	1.99
19180618--19180655	19	2.1	18	90	5	58	63	10	13	13	1.53
19199868--19199915	24	2.0	24	84	15	64	50	10	12	27	1.73
19209849--19209879	16	1.9	16	93	0	53	22	16	0	61	1.34
19215145--19215198	26	2.1	26	85	0	72	31	24	20	24	1.98
19215188--19215272	38	2.3	38	81	6	102	32	16	22	28	1.95
19219759--19219798	2	20.0	2	94	0	71	50	2	0	47	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120