genome.fa.s5.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  5  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1179152--1179205	25	2.2	25	83	9	67	37	5	1	55	1.34
1185356--1185396	17	2.3	19	83	8	50	17	9	7	65	1.44
1186363--1186421	31	1.9	31	86	6	84	45	6	18	28	1.75
1186415--1186460	23	1.9	24	86	8	67	65	10	0	23	1.24
1187446--1187509	31	2.1	31	84	0	83	37	7	10	43	1.69
1188882--1188906	5	5.0	5	100	0	50	0	20	0	80	0.72
1191671--1192062	213	1.8	211	87	3	581	29	11	11	47	1.75
1218784--1218853	21	3.3	21	86	4	88	31	27	10	31	1.89
1219598--1219638	3	14.3	3	80	10	50	36	0	2	60	1.10
1219646--1219706	2	30.5	2	100	0	122	50	0	0	49	1.00
1219718--1219752	12	3.0	12	91	4	54	80	8	11	0	0.92
1221861--1222204	52	6.4	56	79	11	257	35	21	13	29	1.92
1222054--1222135	26	3.2	26	62	19	62	39	23	9	28	1.86
1221921--1222211	52	5.6	52	88	0	402	36	22	13	27	1.92
1238299--1238928	312	2.0	312	89	0	947	18	25	16	39	1.91
1247764--1247812	20	2.5	20	96	0	89	40	30	2	26	1.67
1253703--1253742	19	2.0	19	85	9	53	15	25	15	45	1.84
1260428--1261054	137	4.6	136	91	2	952	30	18	18	33	1.94
1273537--1273639	42	2.5	42	96	0	197	34	17	19	28	1.94
1276071--1276209	69	2.0	69	100	0	278	30	13	17	38	1.88
1277891--1277928	20	1.9	19	89	5	58	55	5	0	39	1.23
1277895--1277941	20	2.4	19	80	16	51	57	4	0	38	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1279412--1279470	31	2.0	30	86	6	84	33	8	13	44	1.74
1280656--1280693	3	12.7	3	100	0	76	68	0	0	31	0.90
1282115--1282190	17	4.4	17	73	6	71	57	5	2	34	1.35
1291023--1291104	40	2.0	40	97	0	155	30	23	4	41	1.75
1293508--1293549	22	1.9	22	95	0	75	45	23	2	28	1.66
1295410--1295442	17	1.9	17	93	0	57	48	3	15	33	1.60
1296817--1296864	18	2.5	20	83	6	64	43	0	2	54	1.12
1296816--1296867	19	2.7	20	79	11	63	44	0	1	53	1.11
1297822--1297858	18	2.1	17	90	5	56	35	10	10	43	1.75
1300030--1300080	27	1.9	27	88	4	77	43	1	1	52	1.23
1300035--1300089	13	4.1	13	75	15	58	38	1	1	58	1.20
1306127--1306195	31	2.2	30	80	12	77	43	10	10	36	1.72
1311254--1311291	19	2.1	19	85	9	53	52	0	0	47	1.00
1315949--1316126	95	1.9	95	82	6	227	27	12	10	49	1.73
1317387--1317424	19	2.1	18	90	5	58	60	0	2	36	1.11
1321761--1321837	39	1.9	39	82	7	93	38	5	10	45	1.61
1324145--1324435	158	1.8	158	85	1	413	30	23	20	25	1.99
1326700--1326737	19	2.1	18	90	5	58	60	0	2	36	1.11
1328457--1328492	15	2.4	15	95	0	63	19	27	38	13	1.90
1328876--1328913	19	2.1	18	90	5	58	60	0	2	36	1.11
1332566--1332614	25	2.0	25	88	4	73	55	0	2	42	1.11
1333158--1333195	19	2.1	18	90	5	58	60	0	2	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1336097--1336173	39	1.9	39	82	7	93	38	5	10	45	1.61
1338486--1338776	158	1.8	158	85	2	406	29	22	21	25	1.99
1339849--1339888	21	2.0	20	90	5	62	0	42	20	37	1.52
1339852--1339898	21	2.2	21	80	0	58	2	40	19	38	1.63
1342601--1342898	30	10.0	30	86	2	377	35	3	24	35	1.73
1344640--1344688	18	2.7	18	78	9	55	48	4	6	40	1.47
1345215--1345749	76	7.0	76	94	0	872	31	17	15	35	1.92
1353174--1353471	30	10.0	30	86	2	377	35	3	24	35	1.73
1355212--1355260	18	2.7	18	78	9	55	48	4	6	40	1.47
1358135--1358919	41	19.2	41	84	1	824	17	28	21	31	1.97
1362753--1362830	20	4.0	20	66	14	54	30	2	7	58	1.39
1362794--1362837	22	2.1	21	83	8	54	27	0	6	65	1.17
1372096--1372138	18	2.4	18	88	7	61	46	0	0	53	1.00
1374297--1374373	38	2.0	38	100	0	154	29	20	28	20	1.98
1377265--1377300	18	2.0	18	100	0	72	38	11	16	33	1.84
1388434--1388586	82	1.9	81	91	4	254	34	18	10	35	1.86
1391651--1391726	30	2.5	29	83	8	98	40	3	1	53	1.27
1392018--1392060	14	2.9	15	82	6	61	34	13	0	51	1.42
1394364--1394389	13	2.0	13	100	0	52	46	7	0	46	1.31
1394498--1394564	29	2.3	29	92	0	107	26	10	8	53	1.64
1395534--1395609	38	2.0	38	92	0	125	53	10	11	23	1.68
1397685--1397731	21	2.2	21	77	7	51	21	2	10	65	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1398653--1398699	9	5.1	9	80	12	51	38	0	2	59	1.09
1398727--1398774	18	2.7	18	83	9	62	27	4	0	68	1.07
1400178--1400256	39	2.0	39	87	0	113	26	37	15	20	1.92
1402761--1402787	12	2.2	12	100	0	54	14	0	7	77	0.97
1410476--1410546	29	2.5	29	80	11	83	36	4	2	56	1.34
1410706--1410772	29	2.3	28	80	19	75	50	2	10	35	1.52
1416547--1416582	17	2.1	17	94	0	63	16	25	30	27	1.97
1416646--1416835	59	3.3	58	83	8	228	31	18	16	33	1.93
1416646--1416876	114	2.0	117	79	6	256	32	18	14	34	1.91
1422676--1422715	18	2.2	18	100	0	80	35	27	5	32	1.79
1438857--1438898	12	3.2	13	80	10	50	47	0	0	52	1.00
1439520--1439554	18	1.9	18	88	0	52	34	5	20	40	1.76
1447178--1447274	30	3.3	30	68	23	87	32	3	30	32	1.73
1447210--1447319	30	3.8	27	76	15	96	31	5	30	31	1.80
1447174--1447308	59	2.3	59	91	6	213	31	3	31	32	1.75
1447818--1447913	6	16.0	6	68	23	60	40	5	0	54	1.23
1447822--1447912	31	3.1	27	89	6	83	40	5	0	53	1.24
1447801--1447902	31	3.4	31	93	2	163	39	4	0	55	1.21
1447799--1447900	11	9.5	11	70	18	63	39	4	0	55	1.21
1448518--1448548	16	1.9	16	93	0	53	54	3	0	41	1.16
1448518--1448587	7	10.3	7	76	17	67	50	1	2	45	1.25
1448531--1448587	13	4.4	13	74	14	55	49	0	3	47	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1448517--1448587	19	3.8	19	78	9	76	49	1	2	46	1.25
1449700--1449850	30	5.0	30	77	9	146	38	25	2	33	1.70
1449822--1450020	59	3.4	58	71	4	184	28	29	4	37	1.77
1451452--1451499	23	2.2	21	82	10	53	43	6	0	50	1.27
1452351--1452395	16	2.7	17	86	6	65	57	2	0	40	1.11
1452366--1452415	23	2.2	24	79	17	61	54	4	0	42	1.19
1452354--1452407	27	2.0	28	85	3	74	55	5	0	38	1.23
1452373--1452415	11	3.9	11	82	8	52	53	4	0	41	1.21
1454274--1454333	27	2.2	27	82	11	70	36	1	0	61	1.06
1469586--1469805	97	2.2	97	79	5	237	37	25	9	27	1.87
1471648--1471683	16	2.2	16	90	5	54	41	33	0	25	1.55
1474811--1474843	15	2.2	15	94	0	57	6	9	6	78	1.08
1475790--1475829	17	2.3	17	86	4	62	20	5	7	67	1.34
1476227--1476261	18	1.9	18	94	0	61	65	0	0	34	0.93
1482494--1482536	20	2.2	19	87	4	59	62	2	0	34	1.08
1488856--1488894	10	3.8	10	83	6	51	33	5	2	58	1.33
1494663--1494698	2	17.5	2	94	5	63	2	47	0	50	1.15
1497878--1497956	23	3.4	23	79	8	72	31	6	16	45	1.72
1503599--1503627	2	14.5	2	100	0	58	0	0	48	51	1.00
1503623--1503936	161	2.0	156	82	6	384	37	20	11	31	1.88
1504103--1504149	4	11.8	4	100	0	94	25	0	23	51	1.49
1504947--1504975	15	1.9	15	100	0	58	34	6	6	51	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1504981--1505005	7	3.6	7	100	0	50	88	0	12	0	0.53
1507277--1507335	14	4.5	13	72	17	50	52	1	1	44	1.21
1507641--1507704	31	2.1	31	87	0	92	21	14	10	53	1.71
1508213--1508301	44	2.0	44	91	0	142	23	10	20	46	1.81
1508740--1508777	19	2.0	19	100	0	76	42	10	5	42	1.62
1511149--1511179	16	1.9	16	93	0	53	67	3	0	29	1.06
1511830--1512012	91	2.0	91	93	0	312	38	15	21	24	1.92
1512523--1512560	17	2.2	18	85	4	51	60	2	0	36	1.11
1514340--1514414	28	2.6	28	83	6	89	60	2	4	33	1.30
1531646--1531995	105	3.3	105	89	3	531	20	7	35	36	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120