genome.fa.s5.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  45  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12527651--12527708	24	2.3	24	82	8	62	34	27	13	24	1.93
12527692--12527781	27	3.4	27	92	1	137	33	18	17	30	1.95
12535164--12535201	17	2.2	17	90	0	58	52	10	13	23	1.71
12554332--12554394	32	2.0	32	90	0	99	30	12	19	38	1.89
12555436--12555470	14	2.5	14	95	0	61	65	5	8	20	1.40
12557672--12557710	13	2.9	14	80	7	53	66	0	28	5	1.12
12571273--12571330	24	2.4	25	76	2	64	37	10	8	43	1.70
12571565--12571605	18	2.2	18	86	4	55	19	2	4	73	1.13
12571717--12571775	28	2.2	26	82	11	66	23	1	3	71	1.11
12572007--12572097	29	3.2	29	77	9	89	35	3	4	57	1.35
12574431--12574463	15	2.2	15	89	10	50	39	3	24	33	1.71
12576143--12576186	23	2.0	22	86	4	61	45	15	0	38	1.47
12593732--12593775	23	2.0	22	86	4	61	45	15	0	38	1.47
12612148--12612256	51	2.1	52	86	1	148	47	8	18	25	1.76
12620149--12620186	2	20.0	2	84	10	53	50	0	0	50	1.00
12621368--12621401	17	2.0	17	88	0	50	44	2	17	35	1.64
12628783--12628816	17	2.0	17	88	0	50	50	2	14	32	1.58
12630898--12630944	22	2.1	22	84	7	60	10	14	4	70	1.31
12630909--12630956	21	2.2	23	88	7	73	8	14	6	70	1.31
12640977--12641025	18	2.7	17	78	12	53	67	6	4	22	1.30
12641106--12641140	3	11.7	3	100	0	70	68	0	0	31	0.90
12641212--12641357	30	4.9	30	83	6	179	31	4	23	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12641214--12641378	90	1.8	90	84	5	226	31	4	23	40	1.76
12642777--12642890	36	3.2	36	83	0	147	30	8	21	39	1.83
12643277--12643346	23	3.0	23	87	4	88	31	5	17	45	1.71
12651957--12652352	29	13.6	29	72	11	186	33	6	25	34	1.82
12652037--12652377	88	3.8	88	75	8	271	34	5	25	34	1.79
12652129--12652534	59	6.9	58	73	11	263	36	4	24	34	1.77
12652154--12652372	119	1.8	119	84	9	304	37	5	24	32	1.78
12652062--12652555	88	5.6	86	71	13	262	34	4	25	34	1.78
12652066--12652593	29	18.0	28	70	17	226	34	4	25	35	1.77
12653700--12653771	3	23.7	3	75	13	67	33	1	1	63	1.11
12654410--12654467	10	5.8	10	74	22	59	55	3	0	41	1.17
12654424--12654504	17	4.8	17	85	0	108	54	6	0	39	1.26
12654933--12655276	161	2.2	161	88	2	516	22	24	18	34	1.96
12654784--12655459	367	1.8	369	87	1	998	22	23	17	35	1.95
12655093--12655977	209	4.2	209	90	0	1380	23	22	18	36	1.95
12660004--12660212	103	2.0	103	100	0	418	22	22	9	45	1.80
12668138--12668235	29	3.4	29	85	1	99	29	7	26	36	1.83
12668189--12668572	29	13.1	30	70	17	167	36	5	23	33	1.79
12668215--12668494	59	4.8	59	75	9	245	36	6	24	33	1.81
12668197--12668413	118	1.8	117	87	6	323	36	8	23	31	1.84
12668185--12668349	88	1.9	87	81	12	203	35	7	23	33	1.84
12668220--12668553	59	5.7	57	76	10	202	36	5	24	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12668395--12668587	58	3.3	58	80	7	207	37	2	23	36	1.69
12668277--12668587	29	10.7	28	72	12	173	37	4	23	34	1.75
12669682--12669751	3	23.0	3	75	13	63	35	1	1	61	1.14
12669682--12669741	13	4.9	13	80	11	74	36	0	1	61	1.06
12670384--12670434	10	4.9	10	77	17	59	58	1	0	39	1.09
12680033--12680071	17	2.2	18	86	13	55	48	0	10	41	1.37
12680524--12680549	2	13.0	2	100	0	52	50	0	0	50	1.00
12682147--12682188	21	2.0	22	86	13	61	64	4	21	9	1.42
12682332--12682381	25	2.1	25	85	7	68	38	4	46	12	1.60
12687433--12687482	17	2.9	17	82	8	57	38	2	6	54	1.37
12692255--12692373	59	2.1	57	82	6	141	27	10	9	52	1.67
12692252--12692373	57	2.1	55	77	11	129	28	11	9	50	1.68
12693221--12693264	21	2.1	21	82	0	52	45	22	0	31	1.53
12693373--12693414	20	2.1	20	86	8	59	40	38	7	14	1.73
12693339--12693401	27	2.3	29	78	13	71	41	31	9	17	1.82
12693440--12693493	20	2.7	20	85	5	74	31	3	24	40	1.72
12693460--12693512	27	1.9	28	92	3	90	26	1	28	43	1.65
12693503--12693554	27	1.9	27	84	0	68	15	0	34	50	1.45
12694221--12694269	13	3.9	13	92	5	75	32	0	6	61	1.21
12694221--12694258	6	5.9	7	85	14	55	28	0	7	63	1.23
12694227--12694274	19	2.5	20	86	10	64	33	0	8	58	1.28
12695016--12695052	18	2.1	18	89	0	56	45	24	18	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12695775--12695825	20	2.5	20	84	9	68	29	0	3	66	1.09
12707826--12707879	27	2.0	27	100	0	108	29	11	7	51	1.64
12707912--12707948	17	2.1	19	85	10	51	8	16	5	70	1.30
12715753--12715845	41	2.3	41	78	0	105	36	25	19	18	1.94
12723487--12723534	13	3.7	13	75	10	53	16	18	20	43	1.88
12729318--12729393	12	6.8	11	72	19	52	39	1	3	55	1.27
12732078--12732105	5	5.6	5	100	0	56	60	0	0	39	0.97
12733918--12733998	30	2.7	30	80	12	87	39	7	16	37	1.76
12734652--12734685	17	1.9	17	88	5	50	44	35	5	14	1.70
12736807--12742356	555	10.0	555	98	0	10811	33	12	22	31	1.91
12743440--12743468	7	4.3	7	95	4	51	27	0	0	72	0.85
12743655--12743694	20	2.0	21	95	5	73	45	17	12	25	1.83
12745014--12745038	13	1.9	13	100	0	50	24	8	20	48	1.76
12752576--12752744	58	2.9	57	81	9	191	43	1	1	52	1.22
12752900--12752955	16	3.5	16	85	0	76	28	26	5	39	1.78
12761301--12761355	21	2.7	20	83	8	74	69	0	1	29	0.99
12761301--12761352	11	5.0	11	76	19	58	67	0	1	30	1.02
12761264--12761395	70	1.9	68	81	7	160	62	1	2	33	1.16
12762482--12762548	31	2.2	30	86	7	91	23	14	19	41	1.89
12762935--12763041	17	6.2	16	68	16	54	25	2	3	68	1.20
12762919--12763023	35	3.1	34	77	14	92	28	2	2	65	1.21
12763712--12763877	58	2.8	60	83	8	187	40	15	12	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12767402--12767446	15	3.0	15	96	0	81	28	20	17	33	1.95
12767851--12767903	22	2.4	21	87	6	70	49	0	16	33	1.47
12767808--12767969	85	1.9	85	92	0	270	46	1	12	38	1.53
12768072--12768146	37	2.0	37	85	10	100	50	5	4	40	1.44
12768081--12768158	18	4.3	18	68	18	54	51	3	5	39	1.42
12768136--12768232	6	16.3	6	71	6	54	55	1	9	34	1.39
12768097--12768248	24	6.4	24	74	13	102	53	2	7	36	1.43
12768152--12768248	12	8.3	12	73	7	76	54	2	8	35	1.42
12768167--12768248	18	4.7	18	77	10	82	56	2	8	32	1.43
12768102--12768196	49	1.9	49	85	12	133	51	3	6	38	1.43
12768167--12768233	34	2.0	34	90	0	107	56	1	10	31	1.42
12768411--12768469	24	2.5	22	76	17	55	57	0	5	37	1.21
12768418--12768468	24	2.0	25	85	11	68	60	0	5	33	1.21
12768481--12768597	6	20.7	6	80	11	95	55	0	8	35	1.30
12768478--12768620	12	12.5	11	77	10	92	55	0	6	37	1.32
12768475--12768576	17	6.2	17	78	14	97	53	0	7	38	1.30
12768481--12768597	17	6.5	17	75	13	83	55	0	8	35	1.30
12768475--12768607	17	8.5	16	71	21	79	55	0	7	36	1.28
12768946--12769024	22	3.6	22	91	0	131	53	5	0	41	1.23
12768923--12769017	44	2.3	42	83	7	113	53	5	2	38	1.35
12770265--12770377	32	3.7	32	86	4	137	30	2	3	62	1.25
12770278--12770355	20	3.8	20	78	13	70	29	1	2	66	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12770278--12770377	32	3.2	31	88	5	141	30	2	3	65	1.19
12770314--12770395	20	4.6	20	71	22	67	30	3	4	60	1.34
12770431--12770488	22	2.6	22	86	10	82	31	6	3	58	1.41
12771030--12771087	24	2.4	24	94	0	98	24	36	31	8	1.85
12771030--12771094	24	2.7	24	88	4	78	24	36	30	7	1.84
12771525--12771588	30	2.4	27	85	15	80	29	1	3	65	1.17
12772439--12772638	57	3.5	58	74	13	153	36	14	22	27	1.93
12773381--12773421	15	2.7	15	73	26	50	58	12	7	21	1.58
12777369--12777483	61	1.9	61	87	0	167	40	4	13	42	1.63
12780498--12780649	82	1.9	79	87	4	223	32	25	17	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120