genome.fa.s5.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  94  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26968518--26969466	478	2.0	463	84	9	1231	46	4	2	47	1.35
26969192--26969509	112	2.9	112	94	1	534	45	5	2	46	1.39
26968796--26969501	54	13.2	52	72	21	365	45	4	2	46	1.38
26972053--26972198	44	3.3	44	84	3	159	29	7	49	13	1.70
26972329--26972838	41	12.8	41	77	9	378	22	26	25	25	2.00
26972477--26972785	154	2.0	155	83	5	394	20	26	26	26	1.99
26972559--26972697	72	1.9	72	89	2	217	20	25	23	30	1.98
26972518--26972734	113	1.9	113	91	0	353	19	26	25	27	1.99
26983300--26983369	29	2.3	29	83	9	79	41	14	8	35	1.76
26990083--26990122	18	2.1	20	86	9	57	25	25	7	42	1.80
26990393--26990423	12	2.5	12	94	5	53	51	9	32	6	1.60
26997935--26997985	13	3.9	13	72	7	50	39	23	1	35	1.66
26997936--26998000	12	5.1	13	75	12	55	38	21	4	35	1.74
26998282--26998393	24	5.1	23	72	20	80	50	2	0	46	1.21
27000865--27000893	14	2.1	14	93	6	51	62	0	0	37	0.96
27008612--27008714	45	2.3	45	82	0	116	26	15	14	43	1.85
27008689--27008781	45	2.1	44	84	6	116	27	17	13	40	1.88
27011038--27011082	20	2.2	20	84	8	54	48	2	0	48	1.13
27011460--27011506	16	2.7	17	81	18	53	36	2	2	59	1.21
27011867--27011930	31	2.1	30	85	5	85	50	9	1	39	1.44
27014979--27015012	13	2.7	13	90	4	52	82	0	17	0	0.67
27022254--27022290	12	3.2	12	92	3	58	0	27	0	72	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27031299--27031519	29	7.8	28	74	17	154	35	3	28	31	1.75
27031299--27031552	56	4.5	56	88	4	307	35	3	27	33	1.74
27031358--27031545	28	6.7	27	72	18	136	34	3	29	32	1.75
27031419--27031575	29	5.5	29	72	15	114	35	3	22	37	1.73
27031652--27031978	162	2.0	162	97	0	618	43	12	16	26	1.84
27033484--27033549	6	11.0	6	81	12	82	46	0	3	50	1.16
27033501--27033556	17	3.2	17	87	2	76	51	1	1	44	1.22
27042709--27042746	15	2.6	15	87	4	51	34	2	5	57	1.35
27053248--27053868	205	3.0	208	89	3	896	23	18	17	40	1.91
27053455--27053863	212	1.9	213	91	1	678	23	19	16	40	1.91
27056008--27056045	20	1.9	20	94	0	67	52	0	0	47	1.00
27056008--27056045	11	3.6	11	82	13	53	52	0	0	47	1.00
27058679--27058785	54	2.0	54	96	0	196	37	15	19	27	1.92
27065407--27065509	51	2.0	51	100	0	206	51	9	5	33	1.59
27068423--27068461	2	20.0	2	94	5	71	51	48	0	0	1.00
27078274--27078304	2	15.5	2	100	0	62	0	51	0	48	1.00
27082277--27082563	30	9.8	29	78	11	237	33	3	26	36	1.75
27082276--27082505	59	3.9	59	78	9	215	33	3	26	36	1.74
27086738--27086793	3	18.7	3	100	0	112	33	0	0	66	0.92
27091615--27091654	20	2.1	19	90	4	62	57	7	0	35	1.27
27091922--27091969	24	1.9	26	87	8	73	35	4	2	58	1.29
27102872--27102918	16	2.9	16	81	9	60	59	4	2	34	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27112642--27112670	2	14.5	2	100	0	58	51	0	0	48	1.00
27113901--27113930	15	2.0	15	100	0	60	26	0	0	73	0.84
27114165--27114242	24	3.2	24	65	13	70	24	6	21	47	1.74
27114609--27114666	22	2.5	24	80	8	66	72	3	3	20	1.14
27128946--27129048	28	3.7	27	76	6	107	20	19	29	31	1.97
27129063--27129171	28	3.9	28	71	9	69	35	29	16	18	1.93
27129159--27129314	14	11.1	14	71	0	105	36	33	14	14	1.87
27129136--27129287	42	3.6	42	74	3	108	36	34	13	14	1.86
27129141--27129322	28	6.5	28	79	0	157	35	34	15	14	1.88
27129339--27129401	32	2.0	32	83	0	81	39	25	7	26	1.83
27129377--27129970	47	12.8	47	77	7	320	46	23	5	25	1.73
27129445--27129525	26	3.3	25	69	22	73	45	27	6	20	1.75
27129375--27129970	94	6.4	94	75	7	437	45	22	5	25	1.73
27129665--27129768	40	2.6	40	86	3	120	52	24	0	22	1.53
27129377--27129875	181	2.7	181	80	7	497	45	23	5	25	1.73
27129967--27130028	28	2.2	28	79	0	70	30	16	22	30	1.96
27130074--27130174	28	3.6	29	73	5	82	27	18	21	31	1.97
27134905--27134964	20	3.1	19	79	18	61	51	6	1	40	1.38
27134926--27134969	18	2.4	18	82	10	54	52	6	2	38	1.41
27134982--27135038	16	3.3	17	79	16	64	68	5	1	24	1.20
27135044--27135094	22	2.3	22	86	3	66	56	29	1	11	1.46
27142478--27142516	19	2.1	19	90	9	62	74	2	12	10	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27149927--27149968	21	2.0	21	85	0	57	45	4	21	28	1.72
27159565--27159626	31	2.0	31	100	0	124	51	9	16	22	1.73
27159693--27159855	29	5.6	28	72	17	127	34	7	26	30	1.84
27159672--27159853	58	3.1	58	86	2	240	35	7	26	30	1.84
27159868--27160094	29	7.8	28	70	9	102	35	3	24	36	1.74
27159853--27160093	58	4.1	57	77	6	193	35	4	24	35	1.75
27159876--27160093	30	7.4	29	75	11	144	35	3	23	37	1.73
27161301--27161340	3	13.7	3	84	5	55	65	0	2	32	1.06
27162119--27162173	17	3.2	17	86	0	74	58	3	1	36	1.26
27162349--27162382	15	2.3	15	95	5	61	52	8	17	20	1.71
27169013--27169047	14	2.6	14	91	8	56	31	0	5	62	1.18
27170509--27170558	25	2.0	26	88	4	75	56	0	6	38	1.24
27171812--27171844	15	2.1	16	88	5	50	72	3	0	24	0.98
27172323--27172361	2	19.5	2	100	0	78	48	0	0	51	1.00
27177025--27177050	3	8.7	3	100	0	52	30	0	34	34	1.58
27177767--27177814	11	4.4	11	78	0	51	18	4	8	68	1.31
27191039--27191238	102	2.0	103	83	5	253	29	17	21	32	1.95
27197094--27197137	19	2.4	19	80	3	54	59	2	4	34	1.30
27197094--27197137	18	2.3	18	84	7	52	59	2	4	34	1.30
27204952--27205009	27	2.1	27	100	0	116	32	3	12	51	1.56
27212653--27212702	24	2.2	22	82	7	55	52	18	0	30	1.46
27213582--27213610	2	15.0	2	92	7	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27214698--27214756	31	1.9	31	86	6	84	45	1	5	47	1.34
27215561--27215605	20	2.2	20	84	7	56	4	15	0	80	0.87
27216940--27216995	19	3.2	18	80	7	53	19	3	3	73	1.13
27217207--27217241	11	3.1	11	95	4	61	31	0	0	68	0.90
27217357--27217421	30	2.2	30	94	0	112	58	15	4	21	1.55
27218838--27218906	23	3.1	22	69	8	59	63	4	0	31	1.14
27240615--27240774	80	2.0	80	96	0	293	35	20	16	27	1.94
27241164--27241188	6	4.2	6	100	0	50	16	0	0	84	0.63
27247224--27247265	20	2.0	20	86	9	57	45	4	16	33	1.69
27253733--27253798	34	1.9	34	93	6	116	24	10	18	46	1.80
27279495--27279537	23	1.9	23	85	4	61	60	2	6	30	1.35
27280303--27280355	17	3.2	16	74	10	54	9	18	1	69	1.25
27280458--27280498	18	2.3	18	100	0	82	29	9	31	29	1.89
27282359--27282409	22	2.3	22	93	0	84	47	11	5	35	1.65
27283961--27284031	6	12.2	6	72	11	58	43	1	1	53	1.18
27283933--27284028	17	5.6	17	76	6	95	40	2	3	54	1.28
27283932--27283987	28	2.0	28	89	6	87	37	1	5	55	1.33
27283933--27284029	29	3.4	29	80	7	92	41	2	3	53	1.28
27283956--27284028	35	2.1	34	84	2	92	41	1	1	56	1.16
27284740--27284768	15	1.9	15	100	0	58	55	0	0	44	0.99
27285892--27285972	30	2.8	29	75	7	83	39	18	2	39	1.64
27285900--27286067	29	5.7	29	73	8	92	36	24	5	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27290232--27290289	29	2.0	30	86	3	82	50	3	6	39	1.46
27292927--27293185	90	2.9	89	80	1	275	25	25	16	32	1.96
27294410--27294462	24	2.1	26	86	10	74	58	0	0	41	0.98
27295386--27295457	20	3.5	21	83	9	94	12	6	13	66	1.43
27295459--27295503	19	2.2	21	88	7	67	6	8	22	62	1.48
27295489--27295580	44	2.1	44	85	0	121	8	4	18	68	1.33
27297574--27297615	17	2.3	18	88	8	59	28	0	4	66	1.12
27297891--27297959	30	2.3	30	90	5	104	59	13	1	26	1.42
27299834--27299895	23	2.7	23	82	12	65	67	1	9	20	1.28
27305814--27305871	29	2.0	29	93	0	98	22	17	13	46	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120