genome.fa.s5.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  93  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26672251--26672276	1	26.0	1	100	0	52	100	0	0	0	0.00
26685521--26685580	30	2.0	30	93	0	102	31	6	10	51	1.61
26685558--26685594	18	2.1	18	94	0	65	37	0	8	54	1.30
26701309--26701409	29	3.2	29	67	28	80	58	9	5	25	1.53
26701283--26701416	66	2.0	66	98	0	259	55	10	6	26	1.58
26707460--26707554	45	2.1	45	92	3	156	44	15	17	22	1.87
26713080--26713122	19	2.2	20	92	8	72	74	4	0	20	1.00
26713088--26713129	20	2.2	20	86	4	59	71	7	2	19	1.20
26714283--26714315	9	3.7	9	84	15	50	24	9	24	42	1.83
26715548--26715756	88	2.4	88	79	3	215	39	13	20	26	1.90
26715553--26715756	44	4.6	44	78	4	187	40	14	19	25	1.89
26717136--26717237	52	2.0	52	86	0	141	24	16	13	45	1.84
26723432--26723460	5	5.8	5	100	0	58	58	0	20	20	1.39
26732899--26732940	15	2.7	16	85	3	50	19	4	4	71	1.22
26732899--26732940	16	2.7	16	85	10	52	19	4	4	71	1.22
26738552--26738636	18	4.8	18	70	12	52	48	20	4	27	1.69
26738611--26738648	17	2.2	18	85	4	51	52	21	2	23	1.59
26744831--26744892	32	2.0	31	81	9	74	35	3	8	53	1.47
26745642--26745670	13	2.1	14	93	6	51	58	0	0	41	0.98
26751198--26751350	62	2.5	60	86	8	222	43	0	4	51	1.22
26759170--26759216	23	2.0	24	83	4	60	29	6	6	57	1.49
26761617--26761659	19	2.3	19	88	8	61	62	2	0	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26765670--26766030	58	6.2	57	83	6	440	36	2	27	33	1.71
26765707--26766088	29	13.2	28	68	15	197	37	2	25	34	1.69
26765670--26766088	58	7.2	58	81	7	426	37	2	26	34	1.70
26766004--26766171	30	5.7	30	81	2	180	40	3	18	37	1.68
26767369--26767414	10	4.6	10	86	8	67	39	2	0	58	1.10
26768156--26768215	17	3.5	17	86	4	77	58	3	1	36	1.25
26774709--26774770	31	2.1	30	88	8	92	24	6	9	59	1.52
26783261--26783330	34	2.1	34	97	0	131	34	14	11	40	1.82
26788067--26788107	16	2.5	17	84	4	57	21	9	4	63	1.44
26793466--26793490	12	2.1	12	100	0	50	60	8	8	24	1.52
26793564--26793602	19	2.0	20	85	5	53	30	2	2	64	1.21
26795968--26796005	7	5.4	7	93	0	67	18	0	42	39	1.50
26798583--26798612	6	5.0	6	95	0	51	36	16	46	0	1.47
26802745--26802769	2	12.5	2	100	0	50	48	0	0	52	1.00
26803318--26803354	17	2.3	15	86	13	56	62	0	0	37	0.96
26803793--26804034	95	2.6	95	90	2	366	27	14	8	49	1.72
26803994--26804042	24	2.0	24	84	7	64	32	2	6	59	1.34
26804003--26804052	23	2.2	22	82	10	57	32	0	4	64	1.12
26804082--26804115	11	3.0	11	91	4	50	26	2	0	70	1.01
26818318--26818352	18	2.0	18	88	5	54	31	5	0	62	1.18
26826656--26827161	61	8.6	58	76	12	363	27	16	15	40	1.88
26826650--26827205	179	3.1	176	79	9	481	28	16	14	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26826656--26827279	60	10.4	60	76	10	414	28	16	15	40	1.88
26826962--26827204	119	2.0	119	79	7	262	30	16	14	39	1.88
26827129--26827297	63	2.7	61	79	8	182	31	15	14	38	1.88
26831095--26831129	17	2.1	16	89	5	52	54	0	8	37	1.31
26831246--26831579	93	3.6	92	90	2	506	41	6	3	48	1.46
26831450--26831578	28	4.2	30	65	16	75	41	8	1	48	1.43
26831498--26831796	151	2.0	151	95	0	535	42	13	3	41	1.60
26831816--26831873	22	2.6	22	72	0	62	32	41	6	18	1.78
26831872--26831940	10	6.9	10	68	6	50	11	26	27	34	1.91
26832843--26832878	15	2.3	16	90	4	56	30	0	0	69	0.89
26833057--26833081	13	1.9	13	100	0	50	36	8	0	56	1.29
26833022--26833287	120	2.2	122	90	2	412	41	6	3	48	1.45
26833177--26833201	13	1.9	13	100	0	50	36	8	0	56	1.29
26833832--26833885	24	2.2	24	80	6	65	27	38	24	9	1.86
26834313--26834430	30	4.0	30	82	1	148	26	7	4	61	1.41
26835327--26835484	60	2.6	61	84	7	191	39	14	18	27	1.90
26835534--26835744	60	3.6	57	78	9	201	39	16	16	27	1.90
26848748--26848815	32	2.1	32	97	0	127	27	7	5	58	1.48
26848743--26848799	17	3.5	17	78	9	73	29	7	5	57	1.47
26848752--26848810	17	3.6	16	77	11	66	28	8	6	55	1.55
26860251--26860457	41	5.0	41	87	1	279	36	10	26	27	1.88
26863454--26863660	41	5.0	41	88	2	288	37	10	27	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26865183--26865222	20	2.1	18	86	9	53	57	2	2	37	1.26
26865183--26865229	22	2.2	21	81	7	51	57	2	2	38	1.23
26867995--26868052	31	1.9	30	85	3	80	63	1	0	34	1.04
26868628--26868671	22	2.0	22	100	0	88	40	9	22	27	1.84
26871382--26873594	144	15.4	144	80	3	1938	25	46	4	23	1.71
26871594--26871676	27	3.3	27	69	19	88	22	48	6	22	1.73
26871603--26871681	24	3.3	24	61	7	61	25	46	6	21	1.74
26871933--26872067	27	5.5	26	64	20	83	28	47	3	20	1.67
26871990--26872064	24	3.1	24	62	7	62	32	45	2	20	1.65
26872244--26872320	21	3.4	21	75	19	73	24	50	6	18	1.70
26872370--26872447	24	3.2	24	64	25	65	26	42	6	24	1.79
26872711--26872786	24	3.2	24	70	20	68	27	47	5	19	1.71
26872991--26873212	27	9.1	27	65	23	125	29	45	3	22	1.67
26873036--26873113	24	3.2	24	64	7	68	30	43	2	23	1.67
26873102--26873185	21	3.7	21	73	17	78	27	53	2	16	1.55
26873132--26873209	24	3.2	24	67	7	77	32	47	2	17	1.62
26873598--26873689	24	4.0	24	85	8	136	20	53	5	20	1.65
26871382--26873594	48	46.3	47	79	5	1707	25	46	4	23	1.71
26871382--26873594	96	23.1	96	81	3	1916	25	46	4	23	1.71
26873607--26873689	6	14.3	6	69	20	52	19	54	4	21	1.63
26873598--26873683	12	7.5	11	75	17	77	20	53	5	19	1.66
26873598--26873683	45	1.9	45	97	0	163	20	53	5	19	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26877343--26877431	27	3.5	26	67	17	71	23	52	3	20	1.61
26877343--26877809	48	9.7	48	86	3	600	24	46	6	21	1.75
26877343--26877809	144	3.2	144	89	0	702	24	46	6	21	1.75
26877466--26877548	21	3.7	21	69	17	67	19	49	9	21	1.76
26877724--26877809	27	3.4	26	72	18	83	29	46	4	19	1.70
26877795--26877968	63	2.8	60	77	8	188	33	46	4	15	1.66
26882385--26882462	26	3.0	26	76	9	88	35	10	10	43	1.73
26887287--26887352	34	1.9	34	87	0	96	42	25	13	18	1.87
26891170--26891194	13	1.9	13	100	0	50	12	0	24	64	1.27
26893902--26893947	16	2.7	18	74	16	53	54	4	0	41	1.20
26897656--26897684	15	1.9	15	100	0	58	37	6	13	41	1.72
26903556--26903602	17	2.8	17	100	0	94	27	29	19	23	1.98
26913360--26913399	16	2.6	15	84	7	53	22	7	15	55	1.65
26914038--26914082	18	2.5	17	85	7	54	31	2	8	57	1.41
26915155--26915188	17	2.0	17	94	0	59	32	11	11	44	1.77
26915126--26915219	47	2.0	47	85	4	127	32	6	10	50	1.63
26915656--26915687	3	10.7	3	100	0	64	65	0	0	34	0.93
26925696--26925722	13	2.1	13	100	0	54	14	14	14	55	1.70
26943154--26943233	34	2.3	35	82	2	90	25	13	26	35	1.93
26946692--26946744	2	26.5	2	100	0	106	49	0	0	50	1.00
26949638--26949680	18	2.3	19	80	11	54	41	2	4	51	1.35
26950696--26950742	24	2.0	24	87	8	69	72	8	6	12	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26962689--26962739	21	2.4	21	90	0	84	0	41	21	37	1.54
26962727--26962883	66	2.4	65	89	1	242	14	25	17	42	1.87
26968396--26968467	8	8.8	8	76	11	58	51	4	1	43	1.29
26968508--26969450	18	53.6	18	65	19	230	46	4	2	47	1.34
26968508--26968606	8	11.9	8	68	18	51	49	2	0	48	1.12
26968519--26968577	30	1.9	31	89	3	93	49	1	0	49	1.11
26968487--26969231	209	3.6	210	95	2	1342	46	4	2	46	1.34
26968936--26969466	49	10.1	48	73	19	345	45	4	2	47	1.36
26969222--26969250	14	2.1	14	100	0	58	51	0	0	48	1.00
26968824--26969354	159	3.3	159	84	9	642	46	4	2	47	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120