genome.fa.s5.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  53  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15446182--15446241	19	3.0	21	67	18	63	28	16	26	28	1.97
15458283--15458370	27	3.3	27	74	6	79	21	25	12	40	1.88
15458440--15458619	27	6.7	27	81	2	209	30	22	13	33	1.92
15462234--15462273	20	2.0	20	86	13	57	20	5	7	67	1.34
15464009--15464041	16	2.1	17	88	11	52	27	6	12	54	1.60
15468680--15469068	194	2.0	194	97	0	742	29	18	17	34	1.94
15482112--15482142	11	2.8	11	95	0	53	25	0	35	38	1.56
15492907--15493070	57	2.9	57	85	3	188	48	7	13	30	1.69
15499214--15499324	55	2.0	56	92	1	188	38	11	9	40	1.73
15512986--15513460	240	2.0	231	92	3	779	34	11	14	39	1.83
15515673--15515697	11	2.3	11	100	0	50	60	0	0	40	0.97
15518694--15518771	40	1.9	42	84	5	106	66	1	7	24	1.25
15530726--15530778	27	2.0	26	85	3	70	18	0	16	64	1.30
15532942--15532993	18	2.9	18	70	0	50	25	32	28	13	1.93
15534594--15534677	27	3.1	27	82	3	80	21	27	22	28	1.99
15534757--15534836	40	2.0	40	100	0	160	27	32	17	22	1.96
15536983--15537062	22	3.6	22	91	0	115	38	15	12	33	1.84
15544772--15544809	16	2.4	17	91	8	62	0	23	0	76	0.79
15544772--15544816	10	4.3	11	85	2	58	0	22	0	77	0.76
15545564--15545607	21	2.1	21	83	8	54	2	27	11	59	1.44
15557094--15557152	22	2.7	22	94	0	100	38	16	11	32	1.86
15559628--15559666	4	9.8	4	82	0	51	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15571329--15571355	5	5.4	5	100	0	54	62	0	0	37	0.95
15581023--15581302	109	2.6	109	85	0	371	26	17	25	31	1.97
15584972--15585001	14	2.1	14	93	0	51	43	3	6	46	1.46
15592144--15592355	100	2.1	100	99	0	415	26	2	24	46	1.66
15596633--15596733	20	4.9	20	74	6	69	46	14	7	30	1.73
15615449--15615659	60	3.5	60	78	2	217	35	22	10	31	1.89
15622604--15622814	60	3.5	60	81	5	228	31	23	13	30	1.93
15625760--15625817	29	2.0	30	83	10	75	53	5	17	24	1.64
15626867--15626892	13	2.0	13	100	0	52	38	15	0	46	1.46
15627287--15627338	22	2.3	22	86	6	68	30	1	1	65	1.14
15627280--15627338	11	5.1	11	81	6	55	32	1	1	64	1.13
15627280--15627337	12	4.9	12	75	12	57	31	1	1	65	1.13
15627287--15627338	11	4.5	11	80	7	59	30	1	1	65	1.14
15628430--15628613	58	3.2	59	88	2	255	36	2	21	39	1.68
15628469--15628648	58	3.1	57	85	2	198	34	4	21	39	1.74
15633692--15633730	18	2.2	18	90	0	60	23	15	43	17	1.87
15633994--15634018	13	1.9	13	100	0	50	8	0	24	68	1.16
15634412--15634882	49	9.6	49	70	12	281	17	25	17	38	1.92
15634412--15634882	98	4.8	98	82	4	547	17	25	17	38	1.92
15635294--15635348	18	3.1	18	100	0	110	61	10	10	16	1.55
15649116--15649196	36	2.2	36	80	0	99	32	8	24	34	1.86
15649268--15649680	222	1.9	223	89	0	639	28	10	27	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15649831--15649937	10	9.7	10	72	14	52	37	2	19	40	1.66
15649831--15649985	69	2.2	69	91	1	247	38	2	20	38	1.66
15649909--15650033	49	2.6	49	89	5	193	39	4	20	36	1.71
15655955--15656001	21	2.3	20	85	3	58	31	17	14	36	1.90
15657034--15657085	24	2.2	24	89	0	77	53	7	3	34	1.48
15660440--15660799	189	1.9	189	94	0	630	34	16	10	38	1.83
15665259--15665350	29	3.2	29	82	3	78	43	2	19	34	1.63
15665278--15665566	90	3.3	88	84	5	368	37	1	23	37	1.66
15665278--15665566	30	9.8	30	82	7	297	37	1	23	37	1.66
15666944--15667227	59	4.8	59	79	10	260	35	27	1	35	1.68
15666958--15667238	88	3.2	88	83	4	318	35	26	2	35	1.69
15666944--15667227	30	9.6	30	78	3	274	35	27	1	35	1.68
15666958--15667227	118	2.3	118	82	6	307	36	27	1	35	1.66
15669747--15669785	19	2.1	19	85	9	53	28	0	5	66	1.12
15669758--15669808	24	2.2	24	82	10	61	25	1	1	70	1.08
15669784--15669813	14	2.1	14	100	0	60	20	6	0	73	1.05
15671368--15671493	64	2.0	64	98	0	243	34	6	9	49	1.61
15673229--15673287	29	2.1	29	83	3	75	27	11	28	32	1.92
15673363--15673529	30	5.6	30	83	8	198	38	3	17	40	1.67
15673336--15673531	90	2.2	89	78	14	208	39	4	18	37	1.71
15673363--15673528	60	2.8	60	87	3	244	39	3	17	39	1.67
15673366--15673529	90	1.8	90	87	10	246	39	3	17	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15675500--15675558	6	9.8	6	73	14	50	55	1	3	38	1.26
15675515--15675542	14	2.0	14	100	0	56	57	0	7	35	1.26
15675933--15676713	38	20.1	40	68	19	381	33	17	14	34	1.90
15675908--15676082	76	2.3	76	88	2	264	32	17	13	37	1.88
15676069--15676627	76	7.3	76	90	1	877	34	17	13	33	1.89
15676066--15676722	305	2.1	309	89	4	1000	33	17	14	34	1.91
15676555--15676725	91	1.9	89	92	2	288	29	17	17	35	1.93
15688977--15689145	30	5.6	30	84	10	202	38	3	18	39	1.69
15688977--15689145	60	2.8	60	83	10	227	38	3	18	39	1.69
15691123--15691181	6	9.8	6	73	14	50	55	1	3	38	1.26
15691138--15691165	14	2.0	14	100	0	56	57	0	7	35	1.26
15691130--15691183	11	5.1	11	72	17	51	57	0	3	38	1.17
15692326--15692373	9	5.3	9	87	0	60	54	12	2	31	1.49
15692453--15692534	19	4.1	19	69	26	62	53	4	1	40	1.30
15692463--15692506	18	2.5	17	82	13	54	52	6	2	38	1.41
15692512--15692564	21	2.5	20	84	3	70	62	3	0	33	1.13
15692524--15692560	11	3.5	11	88	7	58	62	5	0	32	1.18
15692512--15692557	10	4.5	10	83	5	56	65	4	0	30	1.12
15695592--15695649	30	2.0	28	86	6	80	58	1	1	37	1.18
15700071--15700095	12	2.1	12	100	0	50	44	24	16	16	1.86
15703119--15703179	19	3.2	19	78	19	65	77	0	16	6	0.98
15703134--15703178	17	2.8	16	82	3	54	80	0	17	2	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15703382--15703611	119	2.0	114	86	4	316	21	25	18	34	1.96
15703706--15703820	42	2.7	42	81	7	119	20	26	13	40	1.89
15703805--15704141	49	6.9	49	81	6	262	20	25	16	36	1.94
15703824--15704170	98	3.5	98	84	3	446	21	24	16	36	1.94
15703819--15704170	147	2.4	146	80	3	420	21	25	16	37	1.93
15707080--15707191	58	1.9	58	100	0	224	29	22	24	24	1.99
15715222--15715264	21	2.1	20	83	12	52	44	4	16	34	1.68
15720316--15720347	7	4.6	7	96	0	55	34	0	50	15	1.45
15720291--15720333	18	2.3	19	80	4	52	46	0	39	13	1.44
15725203--15725259	28	2.0	28	96	0	105	36	7	12	43	1.69
15729126--15729168	19	2.3	19	84	4	52	18	34	0	46	1.50
15731237--15731296	24	2.5	24	88	0	93	48	5	15	31	1.66
15753807--15753874	18	3.8	18	78	3	75	16	19	14	50	1.79
15758047--15758150	50	2.1	50	92	0	172	33	7	8	50	1.62
15760744--15760844	50	2.0	50	84	7	134	45	13	11	28	1.79
15763468--15763833	182	2.0	182	90	3	576	29	18	15	36	1.91
15764918--15765021	50	2.1	50	89	3	156	34	8	9	47	1.67
15765368--15765410	15	2.9	15	100	0	86	32	32	20	13	1.92
15766469--15766493	13	1.9	13	100	0	50	40	0	12	48	1.40
15770842--15770898	29	2.0	29	82	0	69	21	24	17	36	1.94
15772656--15772724	28	2.5	28	87	0	93	36	13	27	23	1.92
15786077--15786106	12	2.6	11	90	10	51	53	36	0	10	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15790878--15790926	24	2.1	22	85	7	62	40	6	4	48	1.47
15790888--15790932	22	2.0	24	86	8	67	40	6	6	46	1.56
15791826--15791850	13	1.9	13	100	0	50	68	0	16	16	1.22
15809731--15809844	43	2.7	43	76	2	104	38	22	15	22	1.92
15811571--15811728	41	3.8	41	80	10	160	36	11	27	25	1.90
15818234--15818324	41	2.2	41	88	0	128	38	7	28	25	1.83
15818234--15818348	41	2.8	41	85	1	113	39	8	26	25	1.85
15827217--15827264	25	1.9	25	83	8	62	75	0	25	0	0.81
15829027--15829303	43	6.6	43	74	7	203	41	24	14	20	1.89
15832940--15833035	49	2.0	49	85	0	129	44	7	16	31	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120