genome.fa.s5.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  57  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16895483--16895518	2	18.0	2	100	0	72	50	0	0	50	1.00
16895605--16895669	32	2.1	30	82	5	76	52	1	1	44	1.19
16897615--16897644	6	5.0	6	91	0	51	16	30	33	20	1.94
16898166--16898241	26	2.8	26	78	4	71	56	9	1	32	1.39
16901518--16901561	14	3.1	14	76	3	52	18	0	11	70	1.16
16901610--16901688	27	2.9	27	88	0	104	20	31	30	17	1.96
16913532--16913564	17	1.9	17	93	0	57	18	24	12	45	1.83
16916927--16916980	27	2.1	27	86	13	78	51	12	12	22	1.74
16920628--16920714	24	3.7	25	73	16	87	36	12	18	32	1.88
16926661--16926707	18	2.6	18	82	0	58	38	29	12	19	1.89
16935405--16935444	18	2.3	18	86	4	55	52	10	17	20	1.72
16943206--16943273	27	2.5	27	92	0	109	25	14	29	30	1.95
16943210--16943288	27	2.9	27	86	0	86	25	11	31	31	1.91
16955119--16955164	24	1.9	24	86	8	67	67	0	30	2	1.03
16955127--16955164	12	3.2	12	82	14	51	68	0	31	0	0.90
16956847--16956875	15	1.9	15	100	0	58	65	0	34	0	0.93
16956852--16956889	18	2.1	18	90	9	60	65	0	34	0	0.93
16966613--16966658	23	2.0	23	87	12	67	54	0	39	6	1.26
16981348--16981381	18	1.9	17	94	5	59	0	23	2	73	0.97
16982413--16982442	15	2.0	15	93	0	51	0	43	0	56	0.99
16982405--16982462	27	2.1	28	87	3	82	3	36	0	60	1.14
16997654--16997693	17	2.3	18	83	12	57	52	0	27	20	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17011081--17011135	24	2.3	23	78	9	65	61	0	34	3	1.13
17011090--17011125	15	2.4	15	90	0	54	66	0	33	0	0.92
17012182--17012222	14	2.9	14	82	17	50	78	0	21	0	0.76
17023922--17023998	21	3.4	21	69	27	68	46	10	2	40	1.52
17023931--17024004	19	3.4	19	68	28	58	47	12	2	37	1.55
17023946--17024018	23	3.1	23	63	18	60	43	13	1	41	1.53
17023925--17024018	47	2.0	47	100	0	188	44	12	2	40	1.54
17074860--17074900	18	2.3	18	83	8	57	60	0	36	2	1.10
17074857--17074915	27	2.1	28	84	9	77	61	0	35	3	1.13
17083912--17083951	17	2.4	17	87	8	55	17	5	0	77	0.94
17083911--17083951	12	3.5	12	78	15	50	17	4	0	78	0.93
17086847--17086903	28	2.0	30	86	6	82	54	17	1	26	1.53
17093727--17093782	29	2.0	29	89	3	87	44	8	14	32	1.76
17093731--17094226	155	3.2	155	85	2	646	37	10	17	34	1.85
17101601--17101681	26	3.1	26	80	3	101	35	13	19	30	1.91
17105345--17105383	19	2.1	19	90	0	60	30	17	28	23	1.97
17105470--17105532	26	2.4	26	97	0	117	36	12	23	26	1.91
17107957--17108070	27	4.2	27	85	0	75	35	16	22	24	1.95
17107957--17108127	81	2.1	81	81	4	193	33	16	22	26	1.96
17107980--17108136	27	5.8	27	87	1	199	31	18	22	26	1.97
17110897--17110967	20	3.6	20	81	7	83	35	1	7	56	1.35
17110905--17110965	20	3.2	18	90	4	86	37	1	6	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17112445--17112473	13	2.3	13	94	5	51	65	0	10	24	1.23
17112486--17112520	13	2.6	14	90	4	54	51	0	8	40	1.33
17118947--17119033	18	4.8	18	79	8	97	21	19	25	33	1.97
17118947--17119047	36	2.8	36	84	4	123	23	18	25	31	1.98
17118947--17119047	18	5.6	17	78	10	94	23	18	25	31	1.98
17121197--17121246	20	2.4	21	84	15	61	42	0	16	42	1.47
17123055--17123106	21	2.5	21	81	6	61	25	15	28	30	1.96
17123676--17123726	3	17.0	3	100	0	102	66	0	0	33	0.92
17127843--17128262	114	3.8	113	76	10	407	23	22	17	36	1.95
17128178--17128480	96	3.2	95	88	0	435	23	26	15	34	1.95
17128548--17129522	49	19.8	50	69	9	423	19	29	16	35	1.93
17128563--17129527	99	9.8	99	79	6	787	19	29	16	35	1.94
17128545--17129524	197	5.0	195	78	6	875	20	28	16	35	1.94
17128846--17129311	148	3.2	148	75	10	436	20	30	15	33	1.94
17128563--17129527	296	3.3	296	78	7	906	19	29	16	35	1.94
17128847--17129522	50	13.7	50	71	8	400	19	30	15	33	1.94
17130485--17130518	14	2.4	14	90	5	50	0	23	0	76	0.79
17149802--17149851	18	2.8	18	96	0	91	24	32	6	38	1.79
17152765--17152807	4	10.8	4	80	9	52	69	0	25	4	1.07
17155993--17156024	1	32.0	1	93	0	55	3	0	0	96	0.20
17155986--17156024	8	4.4	9	93	6	55	5	0	2	92	0.46
17160455--17160500	23	2.0	23	91	0	74	26	17	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17161234--17161263	9	3.3	9	90	0	51	0	13	0	86	0.57
17171201--17171241	20	2.0	21	95	4	75	73	4	12	9	1.24
17173577--17173640	20	3.2	20	76	14	69	28	1	4	65	1.21
17182088--17182147	28	2.2	27	82	8	77	53	11	1	33	1.47
17189671--17190247	142	4.0	143	84	7	726	42	8	2	46	1.48
17190226--17190280	29	1.9	28	88	3	83	36	18	0	45	1.49
17193748--17193829	43	1.9	43	87	0	119	31	23	13	31	1.93
17202225--17202265	18	2.4	18	84	8	50	26	4	0	68	1.10
17205210--17205252	10	4.3	10	85	8	52	81	4	11	2	0.93
17205203--17205232	14	2.1	14	93	0	51	80	3	10	6	1.01
17205264--17205289	11	2.4	11	100	0	52	84	0	7	7	0.77
17206018--17206076	23	2.6	23	83	0	82	37	23	15	23	1.93
17211420--17211506	8	11.6	8	73	18	53	51	1	1	45	1.16
17211423--17211503	20	4.2	20	72	12	69	49	1	1	48	1.17
17211423--17211509	28	3.0	28	79	12	104	48	1	1	49	1.16
17211492--17211542	26	2.0	26	84	0	66	37	1	5	54	1.36
17215748--17215817	29	2.3	29	85	4	86	37	10	14	38	1.79
17215770--17215827	29	2.0	28	86	6	80	32	8	15	43	1.77
17215770--17215858	31	3.0	30	79	8	101	32	10	14	42	1.79
17216159--17216306	41	3.6	41	80	7	165	20	23	15	40	1.90
17220192--17220339	63	2.5	60	82	12	171	53	1	0	44	1.14
17220315--17220408	45	2.2	44	83	9	115	37	3	1	58	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17220797--17220933	58	2.3	59	86	6	179	24	14	11	48	1.77
17221206--17221264	31	2.0	29	83	6	73	33	6	13	45	1.70
17221765--17221813	20	2.4	21	89	3	73	65	6	2	26	1.27
17222031--17222069	20	1.9	21	89	5	62	25	0	10	64	1.25
17222597--17222648	18	3.0	18	86	10	65	53	0	0	46	1.00
17233478--17233707	111	2.1	112	98	1	446	38	20	13	28	1.89
17235286--17235337	24	2.1	25	86	10	72	34	17	15	32	1.91
17236473--17236509	15	2.6	15	83	8	51	67	0	27	5	1.12
17241453--17241807	120	3.0	119	94	0	629	31	11	20	36	1.89
17248653--17249468	411	2.0	404	92	2	1373	26	12	24	36	1.91
17250354--17250561	68	3.1	67	83	2	272	22	20	18	38	1.93
17250772--17250858	38	2.3	38	84	2	104	25	22	20	31	1.98
17253111--17253148	2	19.0	2	100	0	76	50	0	0	50	1.00
17254520--17254572	18	2.9	18	86	13	74	43	1	0	54	1.11
17261787--17261838	22	2.4	21	81	9	61	57	0	5	36	1.23
17262391--17262432	20	2.2	19	87	8	59	54	2	2	40	1.26
17266234--17266268	18	1.9	18	88	0	52	42	42	2	11	1.55
17268485--17268538	21	2.6	21	84	0	72	25	22	16	35	1.95
17282123--17282186	20	3.2	20	77	4	65	15	9	28	46	1.77
17282430--17282724	147	2.0	146	90	0	464	28	14	20	36	1.92
17290460--17290646	52	3.6	52	87	0	257	33	25	13	27	1.94
17297670--17297913	52	4.7	51	83	4	263	32	25	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17297708--17297911	104	2.0	104	88	1	302	32	23	16	26	1.96
17305052--17305162	29	3.8	29	79	9	109	34	5	13	46	1.66
17305381--17305422	20	2.0	21	82	13	52	57	19	2	21	1.52
17307091--17307141	25	2.0	24	85	14	68	23	13	0	62	1.31
17318899--17318932	16	2.1	17	88	5	52	32	0	17	50	1.47
17319352--17319454	36	2.9	36	95	2	181	30	12	22	34	1.91
17321218--17321263	16	2.9	16	78	18	51	58	0	21	19	1.39
17324748--17324837	28	3.2	28	85	4	112	37	24	14	23	1.92
17332387--17332413	13	2.1	13	100	0	54	29	7	25	37	1.83
17332874--17332927	20	2.7	20	85	0	72	29	29	7	33	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120