genome.fa.s5.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  56  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16476703--16476803	36	2.8	36	80	5	116	35	17	25	20	1.95
16477456--16477507	21	2.5	21	83	0	68	19	11	28	40	1.86
16479761--16479818	19	3.0	20	79	20	63	62	3	0	34	1.12
16479806--16479855	19	2.8	19	85	8	70	52	0	0	48	1.00
16483275--16483311	17	2.1	19	85	10	51	24	0	5	70	1.08
16484153--16484200	20	2.4	20	71	0	51	4	8	20	66	1.35
16484241--16484297	23	2.5	23	82	0	69	14	8	14	63	1.52
16484398--16484424	12	2.2	12	100	0	54	22	0	7	70	1.12
16484499--16484533	18	1.9	18	100	0	70	22	28	0	48	1.51
16487985--16488018	16	2.1	17	88	5	52	29	8	0	61	1.26
16502149--16502211	30	2.1	29	82	8	74	34	7	0	57	1.28
16517220--16517274	25	2.2	25	86	0	83	32	30	16	20	1.94
16517492--16517522	2	15.5	2	100	0	62	51	0	0	48	1.00
16520353--16520448	43	2.3	43	83	8	117	27	25	11	36	1.90
16528615--16528663	15	3.3	15	74	5	55	28	2	4	65	1.22
16528598--16528663	29	2.2	29	86	7	89	28	1	6	63	1.27
16530348--16530392	23	1.9	24	86	4	65	64	0	0	35	0.94
16541894--16541948	24	2.2	24	87	3	74	45	7	16	30	1.74
16546344--16546395	24	2.1	25	82	3	61	73	5	5	15	1.22
16552630--16552664	15	2.3	15	90	0	52	68	8	8	14	1.38
16561613--16561666	24	2.2	24	86	3	72	46	9	14	29	1.76
16566395--16566433	13	2.8	13	88	7	51	38	2	10	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16567897--16568003	36	3.0	36	94	0	178	31	10	21	36	1.87
16568422--16568627	23	9.0	23	89	0	297	32	3	19	44	1.69
16573516--16573756	90	2.7	90	73	7	231	32	14	24	28	1.94
16574677--16575236	280	2.0	280	98	0	1093	37	13	16	32	1.88
16580960--16581008	21	2.3	21	85	0	62	30	28	14	26	1.95
16584125--16584211	26	3.3	26	78	7	79	33	22	17	26	1.96
16592986--16593024	20	2.0	19	85	5	51	17	33	7	41	1.79
16599565--16599774	102	2.1	102	100	0	420	22	14	23	39	1.91
16608029--16608068	19	2.1	19	85	0	53	35	5	5	55	1.44
16609405--16609444	3	13.7	3	94	5	73	70	0	0	30	0.88
16614207--16614539	38	8.8	38	81	3	321	17	20	27	34	1.95
16614206--16614546	114	3.0	114	80	3	382	16	20	27	34	1.95
16616797--16616840	8	5.4	8	78	5	52	81	0	15	2	0.78
16616794--16616838	18	2.7	16	83	16	56	82	0	15	2	0.77
16621004--16621036	12	2.6	13	85	9	50	24	0	3	72	0.98
16620995--16621049	16	3.2	17	76	20	53	21	0	3	74	0.97
16621272--16621306	18	1.9	18	88	0	52	31	0	5	62	1.18
16624901--16624938	16	2.3	17	86	4	51	73	2	0	23	0.95
16652158--16652210	17	3.2	16	80	15	72	83	0	16	0	0.66
16652158--16652208	23	2.2	23	89	6	77	82	0	17	0	0.67
16653264--16653971	49	14.4	49	75	6	429	41	17	21	19	1.90
16653259--16653954	98	7.1	98	78	4	571	41	16	21	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16653289--16653973	147	4.7	147	78	4	574	42	17	20	19	1.90
16654222--16654809	81	7.2	81	85	2	714	32	28	15	23	1.95
16654755--16654879	45	2.8	44	85	4	144	32	24	18	25	1.97
16666785--16666904	45	2.6	46	84	6	145	34	25	17	23	1.96
16667309--16667365	24	2.5	24	86	11	75	22	3	15	57	1.53
16667679--16667719	20	1.9	22	85	14	59	36	2	0	60	1.10
16667832--16667872	16	2.6	16	84	11	57	17	0	4	78	0.93
16668137--16668209	36	1.9	40	83	10	100	28	4	5	61	1.37
16673266--16673310	21	2.1	21	84	8	56	26	22	20	31	1.98
16678060--16678089	14	2.2	13	94	5	51	36	0	0	63	0.95
16682761--16682801	20	2.0	20	100	0	82	53	0	12	34	1.38
16682764--16682812	20	2.5	20	89	0	71	55	4	12	28	1.55
16701149--16701199	18	2.8	18	87	0	75	49	9	27	13	1.74
16705161--16705306	35	4.1	35	83	3	132	30	6	31	32	1.82
16705860--16705916	28	2.0	28	86	6	80	28	29	21	21	1.98
16711007--16711049	16	2.5	17	82	14	52	69	0	11	18	1.17
16710968--16711038	23	3.0	23	76	14	63	73	1	8	16	1.15
16713078--16713297	93	2.4	93	80	4	221	27	24	16	31	1.96
16713461--16713578	42	2.8	42	82	7	134	19	26	16	38	1.92
16713588--16714131	49	11.2	49	78	4	485	20	26	17	35	1.95
16713588--16714119	243	2.2	241	84	3	690	20	27	17	35	1.94
16714986--16715019	8	4.2	8	85	14	52	0	14	0	85	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16717122--16717592	49	9.6	48	73	8	335	21	24	17	35	1.95
16717111--16717617	98	5.2	97	79	6	429	22	25	16	35	1.94
16717219--16717591	147	2.5	147	86	4	538	21	25	16	36	1.94
16717008--16717617	49	12.5	49	70	8	330	22	26	15	35	1.94
16721934--16721974	21	2.0	21	95	0	73	56	9	12	21	1.65
16722738--16722774	14	2.6	14	100	0	74	35	29	13	21	1.92
16733834--16734048	109	2.0	109	85	3	290	40	15	11	32	1.83
16734222--16734268	3	15.7	3	100	0	94	65	0	0	34	0.93
16734340--16734426	38	2.3	38	78	7	97	70	2	10	17	1.26
16736352--16736586	93	2.5	93	78	6	226	25	24	17	33	1.96
16737116--16737193	37	2.1	37	87	0	111	24	29	20	25	1.99
16738158--16738188	16	1.9	16	93	0	53	22	16	0	61	1.34
16740483--16740541	17	3.5	17	73	0	55	16	20	10	52	1.72
16741581--16741683	37	2.8	37	82	2	109	29	31	18	21	1.97
16742829--16743480	49	13.3	48	79	5	621	21	27	16	34	1.95
16744336--16744368	16	2.1	16	100	0	66	0	12	0	87	0.53
16745927--16746313	150	2.6	149	88	4	564	41	3	10	44	1.54
16745815--16746358	153	3.7	149	78	11	511	42	3	10	43	1.56
16747080--16747121	17	2.4	17	84	11	50	23	26	2	47	1.64
16752457--16752498	17	2.4	17	88	4	57	21	28	2	47	1.63
16752437--16752484	24	2.0	24	83	0	60	20	33	2	43	1.64
16756170--16756203	4	8.5	4	86	0	50	23	23	0	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16759983--16760047	7	9.3	7	86	6	87	83	0	13	3	0.77
16759983--16760055	13	5.5	13	78	18	71	82	0	13	4	0.81
16759983--16760055	21	3.7	20	82	12	80	82	0	13	4	0.81
16760456--16761083	42	14.9	42	85	2	830	21	18	25	35	1.95
16762083--16762265	99	1.8	99	79	6	210	41	2	10	45	1.50
16762082--16762471	154	2.6	149	89	3	582	42	3	10	43	1.56
16766412--16766625	109	2.0	109	85	3	288	41	16	11	30	1.84
16781286--16781316	14	2.3	14	94	5	55	29	16	9	45	1.79
16784262--16784493	49	4.8	49	77	4	168	20	21	16	40	1.91
16784407--16784510	49	2.1	49	83	0	127	25	21	14	39	1.91
16786082--16786510	49	8.8	49	78	4	348	23	27	14	33	1.94
16786084--16786514	147	2.9	145	81	3	429	23	27	14	34	1.94
16790174--16790213	17	2.4	17	95	0	71	52	12	20	15	1.74
16797624--16797785	80	2.0	81	92	1	272	37	18	9	33	1.84
16813554--16813590	18	2.1	18	94	0	65	16	5	37	40	1.71
16827182--16827228	24	2.0	24	86	0	67	70	4	12	12	1.31
16833308--16833346	18	2.2	18	100	0	78	5	10	0	84	0.76
16833307--16833349	9	4.7	9	82	2	50	4	9	0	86	0.71
16847703--16847751	22	2.2	22	100	0	98	18	30	4	46	1.67
16851536--16851658	37	3.3	37	88	2	174	26	32	20	21	1.97
16857895--16857925	15	2.1	15	93	0	53	45	6	38	9	1.63
16859101--16859146	24	2.0	23	83	12	58	6	36	4	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16863019--16863063	9	5.2	8	82	12	54	2	17	0	80	0.82
16865157--16865250	47	2.0	48	97	2	181	29	24	15	29	1.96
16871506--16871537	2	16.0	2	100	0	64	50	0	0	50	1.00
16872335--16872520	30	6.3	29	77	7	151	40	20	5	32	1.77
16872335--16872517	60	3.1	60	82	2	217	41	21	6	31	1.77
16872335--16872498	90	1.8	89	79	8	190	41	20	6	32	1.76
16878096--16878124	13	2.1	14	93	6	51	55	6	0	37	1.27
16890207--16890242	18	2.0	18	88	0	54	66	0	0	33	0.92
16894404--16894447	23	1.9	23	95	0	79	34	4	13	47	1.63
16895127--16895160	17	2.0	17	94	0	59	44	0	2	52	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120