genome.fa.s5.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  25  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6551280--6551354	31	2.5	29	89	8	123	53	0	1	45	1.08
6551332--6551377	9	5.1	9	82	17	60	54	0	0	45	0.99
6551954--6552006	27	2.0	27	84	0	70	50	28	0	20	1.48
6552028--6552082	23	2.3	23	84	9	67	49	27	1	21	1.60
6555344--6555398	26	2.1	26	86	6	76	54	1	1	41	1.21
6557410--6557461	21	2.5	21	83	0	68	25	17	30	26	1.97
6558076--6558225	75	2.0	75	98	0	291	56	9	13	20	1.64
6560371--6560410	2	20.0	2	100	0	80	50	0	0	50	1.00
6562937--6562964	10	2.8	10	100	0	56	10	28	39	21	1.87
6562937--6562984	10	4.6	10	92	2	51	14	29	33	22	1.94
6562974--6563079	7	15.7	7	76	11	96	16	21	24	37	1.93
6562974--6563078	20	5.2	20	85	4	131	16	21	24	37	1.93
6562974--6563078	27	3.9	27	85	5	149	16	21	24	37	1.93
6564127--6564162	3	12.3	3	94	5	65	30	0	0	69	0.89
6566215--6566250	16	2.2	16	90	9	56	16	11	5	66	1.40
6567706--6567732	7	3.9	7	100	0	54	59	0	29	11	1.32
6568431--6568460	14	2.2	14	94	5	53	30	23	10	36	1.87
6568547--6568571	13	1.9	13	100	0	50	40	4	0	56	1.18
6583390--6583551	56	2.9	55	82	6	193	30	17	9	42	1.81
6583404--6583599	56	3.5	55	79	7	137	33	17	9	38	1.83
6583584--6583665	33	2.5	33	81	0	101	41	4	13	40	1.66
6584230--6584259	13	2.2	14	94	5	53	76	0	10	13	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6584239--6584298	25	2.4	25	80	2	66	73	0	1	25	0.93
6585726--6585779	28	1.9	28	85	7	74	37	1	40	20	1.63
6586073--6586118	18	2.5	18	85	3	56	36	17	13	32	1.88
6588557--6588711	65	2.3	66	88	9	228	54	1	1	41	1.19
6589237--6590447	80	15.1	80	89	1	1784	26	18	22	33	1.96
6590504--6590681	50	3.6	50	85	0	212	23	24	16	35	1.94
6591601--6591742	1	142.0	1	74	0	122	0	11	0	87	0.63
6591601--6591740	12	10.8	13	83	13	166	0	11	0	87	0.63
6591601--6591741	7	20.7	7	84	13	172	0	11	0	87	0.63
6591600--6591742	57	2.5	59	87	10	206	0	11	0	86	0.64
6591607--6591742	13	10.4	13	84	9	161	0	11	0	87	0.62
6596773--6596921	68	2.2	68	85	9	198	57	2	0	39	1.15
6596773--6596935	64	2.5	66	84	12	210	58	1	1	38	1.17
6599786--6599867	41	2.0	41	97	0	155	34	13	2	50	1.55
6600824--6600857	18	1.9	18	88	5	52	73	8	0	17	1.08
6602643--6602692	21	2.3	22	83	13	59	50	10	2	38	1.48
6603054--6603104	25	2.0	25	100	0	102	23	23	3	49	1.67
6606982--6607042	10	5.6	11	75	14	56	32	0	1	65	1.02
6607670--6607713	23	1.9	23	100	0	88	9	0	52	38	1.33
6608603--6608724	55	2.2	56	88	1	174	27	21	28	22	1.99
6611500--6611707	43	4.8	44	81	6	219	36	9	22	31	1.86
6622299--6622333	13	2.7	13	83	16	54	22	0	0	77	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6622454--6622512	10	6.1	10	81	15	70	71	1	0	27	0.96
6622456--6622519	10	6.5	10	81	15	53	70	4	0	25	1.06
6623631--6623936	30	10.2	30	77	8	223	37	21	5	35	1.76
6623631--6623936	60	5.1	59	77	7	296	37	21	5	35	1.76
6635107--6635138	12	2.7	12	90	0	55	28	6	12	53	1.62
6635670--6635836	50	3.3	50	80	0	181	34	17	23	23	1.96
6635887--6636018	42	3.3	40	77	7	115	31	25	15	26	1.96
6636908--6636950	10	4.1	10	79	8	50	72	2	2	23	1.08
6636911--6636962	17	3.1	17	81	8	52	71	3	1	23	1.13
6637450--6637511	12	5.2	12	76	0	70	69	12	8	9	1.37
6637450--6637510	24	2.5	24	83	0	86	68	13	8	9	1.38
6637456--6637588	36	3.9	35	75	10	96	69	15	6	8	1.35
6637540--6637611	23	3.1	23	82	11	94	70	18	5	5	1.26
6637547--6637621	21	3.4	21	75	20	64	66	20	6	6	1.38
6638913--6638979	30	2.2	30	83	0	80	34	22	10	32	1.88
6639105--6639138	4	8.5	4	86	0	50	23	2	2	70	1.15
6639105--6639146	12	3.4	12	84	15	59	23	4	4	66	1.30
6640115--6640147	5	6.8	5	96	3	59	63	0	36	0	0.95
6642465--6642497	16	2.0	17	94	5	59	30	0	12	57	1.35
6642955--6642988	16	2.1	17	89	10	54	61	0	8	29	1.26
6643591--6643621	3	10.3	3	92	0	53	29	67	3	0	1.06
6648721--6648792	3	24.0	3	97	0	135	1	31	0	66	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6652858--6653022	43	3.8	42	83	4	177	35	10	23	30	1.88
6655582--6655793	79	2.7	79	89	2	329	30	27	20	20	1.98
6662850--6663027	41	4.2	40	76	13	153	26	26	10	35	1.88
6662870--6663027	41	3.8	39	78	10	154	25	27	10	36	1.89
6662865--6663027	82	2.0	84	81	7	199	26	26	10	35	1.89
6670201--6670431	27	8.6	27	76	2	187	29	20	13	36	1.91
6670221--6670429	81	2.6	81	79	1	213	30	19	12	36	1.90
6681541--6681582	17	2.5	17	88	0	66	83	0	14	2	0.75
6685392--6685450	29	2.0	30	86	3	84	50	15	3	30	1.60
6685737--6685766	15	2.0	15	93	0	51	10	0	63	26	1.26
6686227--6686260	18	1.9	18	88	5	52	73	5	2	17	1.16
6687267--6687319	27	2.0	27	88	0	79	33	15	11	39	1.83
6691008--6691453	42	10.8	42	78	7	457	25	14	23	36	1.92
6691021--6691453	81	5.3	80	81	4	411	24	13	24	37	1.92
6707206--6707265	21	2.9	21	84	0	75	35	25	15	25	1.94
6710548--6710582	18	1.9	18	88	11	54	40	5	22	31	1.78
6710593--6710760	88	1.9	89	90	3	268	27	22	14	34	1.94
6710574--6710848	151	1.9	145	84	6	374	29	20	14	36	1.92
6710682--6710975	62	4.8	60	81	7	346	29	18	14	38	1.90
6710686--6710970	122	2.3	124	89	3	427	30	18	12	38	1.89
6710885--6711077	102	1.9	101	88	3	289	32	14	12	40	1.84
6710823--6711123	163	1.8	163	83	6	396	31	15	13	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6710986--6711166	61	3.0	59	76	8	175	29	16	12	40	1.86
6710761--6711166	223	1.8	224	84	3	557	30	16	13	39	1.88
6712001--6712120	30	4.1	30	89	3	172	61	3	6	28	1.37
6712007--6712104	17	6.2	17	69	26	65	61	3	6	29	1.35
6712577--6712637	12	5.1	12	71	0	59	8	36	31	24	1.85
6713365--6713410	22	2.1	22	84	8	58	69	4	2	23	1.17
6713313--6713414	51	2.0	51	84	3	136	62	2	2	31	1.25
6713528--6713573	22	2.1	22	84	8	58	65	0	0	34	0.93
6714462--6714517	22	2.5	22	91	0	85	25	8	28	37	1.86
6714612--6714759	73	2.0	73	96	0	269	47	0	8	43	1.34
6714685--6715113	95	4.5	94	94	1	709	49	3	4	42	1.41
6715097--6715134	11	3.5	11	85	7	51	47	2	0	50	1.15
6715231--6715265	17	2.1	16	89	5	52	37	8	0	54	1.31
6716619--6717333	355	2.0	356	95	0	1272	27	27	18	26	1.98
6719476--6720087	60	10.0	62	73	10	363	42	14	15	27	1.85
6719667--6719704	15	2.5	15	95	0	67	71	0	7	21	1.11
6719736--6719958	123	1.8	123	87	3	333	45	12	14	27	1.81
6720712--6720767	17	3.0	20	65	19	50	37	7	0	55	1.27
6724540--6724569	3	10.0	3	100	0	60	66	0	0	33	0.92
6724921--6724969	11	4.3	11	80	17	55	34	2	0	63	1.06
6728147--6728184	17	2.3	16	86	13	51	36	31	7	23	1.84
6729572--6730139	29	19.3	29	84	7	501	37	24	3	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6741911--6742648	78	9.5	78	82	2	709	24	30	19	26	1.98
6741911--6742624	39	18.3	38	70	7	349	23	30	18	26	1.98
6744917--6745278	30	12.2	29	78	6	311	38	26	2	32	1.70
6744917--6745259	59	5.7	59	80	8	338	38	25	2	33	1.68
6749579--6749625	21	2.2	21	77	7	51	46	0	6	46	1.28
6749588--6749858	143	1.9	142	89	3	420	43	2	9	45	1.48
6749836--6749876	20	2.1	20	86	4	57	43	0	14	41	1.45
6749731--6749977	121	2.0	121	87	6	358	42	2	9	44	1.50
6760218--6760294	21	3.7	21	77	3	75	29	12	24	32	1.93
6760825--6760872	24	2.0	24	84	12	62	25	6	31	37	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120