genome.fa.s5.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  100  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28727016--28727074	23	2.6	23	83	5	66	52	5	0	42	1.23
28727043--28727093	17	2.8	18	88	5	68	56	5	3	33	1.42
28728047--28728096	17	2.9	17	84	3	64	56	2	2	40	1.22
28744512--28744877	200	1.9	194	89	3	570	39	21	17	22	1.93
28748733--28748777	22	2.0	22	87	8	65	55	13	4	26	1.57
28750225--28750278	16	3.2	16	77	15	56	55	1	0	42	1.10
28750427--28750489	32	2.0	32	87	0	90	42	7	4	44	1.54
28752501--28752787	143	2.0	143	100	0	574	41	15	16	26	1.88
28753451--28753495	16	2.9	16	80	3	56	46	11	13	28	1.77
28765634--28765675	22	1.9	22	85	0	57	61	4	2	30	1.29
28777426--28777455	14	2.1	15	93	6	53	0	16	0	83	0.65
28777921--28777963	21	2.0	21	86	8	61	20	6	39	32	1.80
28784105--28784139	16	2.3	16	90	9	56	0	11	5	82	0.82
28785131--28785217	41	2.1	41	100	0	174	32	16	12	39	1.86
28799104--28799164	19	3.3	19	84	10	74	59	1	1	37	1.17
28799222--28799274	18	3.1	17	92	7	90	45	0	0	54	0.99
28799406--28799447	21	2.0	20	86	4	57	28	7	4	59	1.44
28807303--28807459	60	2.6	59	82	5	176	25	18	10	45	1.82
28807606--28807655	23	2.1	23	85	7	64	48	12	16	24	1.79
28808661--28808719	24	2.6	24	84	10	72	35	1	3	59	1.24
28808672--28808719	21	2.2	22	85	14	64	33	0	4	62	1.14
28810482--28810522	2	20.5	2	100	0	82	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28840748--28840805	25	2.3	25	85	8	73	65	1	1	31	1.13
28846499--28846554	28	2.0	28	85	3	76	55	3	0	41	1.17
28847460--28847519	20	3.1	20	64	7	52	33	1	6	58	1.34
28850351--28850496	73	2.0	73	86	0	202	43	17	10	28	1.82
28852540--28852631	45	2.0	45	93	0	157	25	29	13	32	1.93
28857099--28857149	24	2.1	24	88	0	75	23	9	9	56	1.61
28857111--28857161	24	2.1	24	85	0	66	23	13	11	50	1.74
28859064--28859114	24	2.1	24	85	0	66	25	7	9	56	1.58
28859078--28859126	24	2.0	24	84	7	64	26	12	10	51	1.71
28872165--28872191	14	1.9	14	100	0	54	40	7	0	51	1.30
28874622--28874664	2	21.5	2	85	0	59	48	6	0	44	1.29
28878868--28878905	19	2.0	19	100	0	76	26	5	0	68	1.11
28878889--28879032	70	2.1	69	89	6	222	38	0	4	57	1.18
28878888--28879053	63	2.6	62	80	17	212	40	0	4	54	1.22
28880653--28880703	18	3.0	17	77	5	59	64	1	5	27	1.27
28883814--28883881	25	2.7	25	84	8	77	60	1	0	38	1.06
28888331--28888362	16	2.0	16	100	0	64	37	25	0	37	1.56
28889105--28889135	2	15.5	2	100	0	62	51	0	0	48	1.00
28910817--28910841	2	12.5	2	100	0	50	48	0	0	52	1.00
28914085--28914157	18	4.0	18	75	19	62	65	1	5	27	1.22
28918302--28918472	86	2.0	86	98	0	333	34	15	12	36	1.86
28918978--28919059	27	3.0	27	90	1	119	26	23	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28919479--28919529	19	2.7	19	76	11	59	15	1	25	56	1.50
28936962--28937003	22	1.9	22	95	0	75	9	30	23	35	1.87
28936966--28937015	22	2.3	22	86	6	66	12	34	20	34	1.89
28936975--28937028	22	2.5	22	76	11	56	11	29	20	38	1.87
28942515--28942549	18	1.9	18	88	0	52	14	8	2	74	1.17
28942543--28942588	24	2.0	24	82	4	58	10	21	15	52	1.73
28947148--28947239	31	3.1	28	71	14	78	45	6	6	41	1.56
28954603--28954650	20	2.4	20	79	6	53	37	0	2	60	1.09
28955182--28955226	19	2.2	21	84	7	58	64	0	0	35	0.94
28956275--28956303	14	2.1	14	100	0	58	31	6	6	55	1.53
28956671--28956703	16	2.1	16	94	5	59	69	6	0	24	1.10
28956914--28956962	23	2.1	23	100	0	98	28	20	4	46	1.68
28957494--28957587	17	5.5	17	85	0	116	34	1	5	59	1.27
28959452--28959734	30	9.6	29	68	12	132	34	24	4	36	1.76
28959460--28959760	59	5.1	59	80	9	321	34	23	5	36	1.79
28959510--28959722	117	1.8	118	87	3	322	35	23	5	36	1.77
28964011--28964110	49	2.0	51	88	7	152	29	15	9	47	1.75
28965362--28965410	22	2.2	22	77	0	53	24	8	6	61	1.47
28965512--28965554	10	4.2	10	77	16	52	30	0	2	67	1.03
28965831--28965896	18	3.6	18	72	12	62	60	3	1	34	1.21
28965831--28965866	19	1.9	19	88	5	56	66	0	2	30	1.06
28974762--28974813	23	2.3	23	96	0	95	25	17	17	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28977723--28977799	30	2.6	29	82	12	84	50	5	2	41	1.38
28977734--28977798	30	2.1	32	85	5	89	50	6	1	41	1.36
28985353--28985413	29	2.1	30	84	6	81	39	3	1	55	1.26
28986358--28986387	15	2.0	15	93	0	51	76	3	0	20	0.92
28990436--28990489	20	2.6	19	80	13	54	61	5	0	33	1.19
28990553--28990617	10	6.7	10	77	13	64	67	3	1	27	1.14
28991122--28991163	20	2.2	20	91	4	68	33	0	4	61	1.17
28991121--28991163	19	2.1	21	83	12	63	32	0	4	62	1.15
28991021--28991150	9	13.4	9	68	16	57	35	1	3	60	1.22
28991110--28991163	22	2.6	21	82	11	58	33	0	5	61	1.19
28992288--28992329	3	14.0	3	100	0	84	33	0	0	66	0.92
28997609--28997639	6	5.2	6	100	0	62	67	16	16	0	1.23
28997826--28997888	20	3.2	19	80	10	72	31	3	3	61	1.27
28997830--28997889	31	1.9	31	83	6	77	28	3	3	65	1.25
28998051--28998084	6	5.7	6	100	0	68	85	0	0	14	0.60
28998133--28998179	19	2.5	20	76	13	55	29	2	6	61	1.32
29004152--29004177	2	13.0	2	100	0	52	50	0	0	50	1.00
29007871--29007909	20	2.0	20	90	5	62	58	0	0	41	0.98
29007897--29007934	15	2.4	16	83	16	53	39	0	0	60	0.97
29008032--29008066	3	11.7	3	100	0	70	31	0	0	68	0.90
29008076--29008106	16	1.9	16	93	0	53	32	6	12	48	1.67
29011155--29011197	22	2.0	21	82	13	52	51	0	6	41	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29012026--29012141	61	1.9	61	80	3	135	40	13	5	40	1.67
29013188--29013318	61	2.2	61	87	4	185	35	5	16	42	1.70
29020113--29020203	28	3.2	28	66	22	82	40	21	7	29	1.81
29020104--29020215	56	2.0	56	96	0	206	35	22	8	33	1.83
29020782--29020830	24	2.0	24	100	0	98	46	8	20	24	1.77
29024161--29024215	28	2.0	28	88	0	83	36	14	47	1	1.55
29030560--29030585	2	13.0	2	100	0	52	50	0	0	50	1.00
29031457--29031504	25	2.0	24	83	4	60	22	2	27	47	1.62
29032682--29032721	19	2.2	19	90	4	64	57	7	0	35	1.27
29033567--29033798	116	2.0	116	98	0	446	31	15	18	33	1.93
29041944--29042096	76	2.0	77	94	1	272	20	5	33	40	1.75
29045902--29046019	59	2.0	60	96	1	220	28	7	30	33	1.85
29046429--29046604	67	2.9	58	85	14	262	17	20	16	45	1.86
29046463--29046597	67	2.0	67	100	0	270	17	19	17	45	1.86
29047079--29047137	28	2.1	28	100	0	118	27	10	16	45	1.80
29061129--29061162	15	2.2	16	89	5	52	23	2	2	70	1.15
29073699--29073743	2	22.5	2	100	0	90	48	0	0	51	1.00
29073784--29073834	19	2.7	19	90	6	77	41	0	3	54	1.19
29074286--29074329	23	1.9	23	95	0	79	22	38	9	29	1.85
29080785--29080856	31	2.3	31	90	0	108	26	23	11	38	1.88
29087700--29087834	50	2.7	50	82	8	134	34	17	26	20	1.95
29087859--29088203	40	8.7	41	76	7	327	30	26	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29087859--29088208	79	4.4	79	85	3	452	30	26	18	23	1.98
29092569--29092598	16	1.9	16	93	6	53	50	0	6	43	1.28
29096246--29096293	25	1.9	25	100	0	96	54	8	10	27	1.63
29099342--29099375	17	2.0	17	94	0	59	29	20	17	32	1.96
29105111--29105209	52	1.9	52	95	0	180	48	7	0	44	1.30
29105321--29105359	21	1.9	20	89	5	60	64	0	15	20	1.30
29107224--29107589	59	6.2	59	90	2	551	32	28	3	34	1.75
29107224--29107588	117	3.1	116	90	3	554	32	29	3	34	1.75
29107224--29107589	176	2.1	177	90	2	567	32	28	3	34	1.75
29107669--29107714	15	3.0	16	75	12	51	23	13	6	56	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120