genome.fa.s5.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  114  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34266020--34266070	21	2.4	21	83	0	66	54	11	3	29	1.54
34267256--34267284	2	15.0	2	92	7	51	51	0	0	48	1.00
34279568--34279611	16	2.7	15	82	10	52	65	0	2	31	1.05
34279570--34279642	23	3.1	23	88	2	92	60	2	1	35	1.20
34285282--34285307	12	2.2	12	100	0	52	76	0	15	7	0.99
34285298--34285339	19	2.3	19	87	4	59	73	0	4	21	1.01
34288931--34288962	3	10.7	3	100	0	64	68	0	0	31	0.90
34291240--34291273	7	4.9	7	100	0	68	0	55	0	44	0.99
34293903--34293927	2	12.5	2	100	0	50	48	0	52	0	1.00
34297859--34297913	23	2.4	23	100	0	110	9	25	23	41	1.83
34297859--34297928	23	3.1	23	89	6	81	10	27	20	42	1.83
34298380--34298415	2	19.5	2	83	16	51	0	44	0	55	0.99
34298379--34298416	7	5.3	7	93	6	67	0	42	0	57	0.98
34298964--34299026	13	4.8	13	76	18	51	41	4	11	42	1.61
34299398--34299464	34	2.0	34	90	0	107	29	13	7	49	1.69
34300726--34300758	15	2.2	15	89	10	50	39	0	24	36	1.56
34300777--34300825	25	2.0	25	84	8	64	38	6	22	32	1.79
34305619--34305912	80	3.7	81	84	3	382	33	9	16	40	1.80
34307882--34307921	21	1.9	21	85	10	55	65	5	20	10	1.42
34309607--34309644	15	2.6	15	87	4	51	42	0	21	36	1.53
34309768--34309818	6	8.5	6	91	0	75	47	0	31	21	1.51
34311041--34311087	18	2.6	18	86	6	60	34	12	10	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34315890--34315933	19	2.4	18	82	14	54	56	0	2	40	1.11
34316773--34316813	15	2.7	16	75	24	52	65	0	0	34	0.93
34321512--34321536	6	4.2	6	100	0	50	52	0	0	48	1.00
34324257--34324301	24	1.9	23	81	4	54	60	0	33	6	1.23
34327540--34327603	26	2.5	27	76	16	73	45	1	0	53	1.10
34331215--34331255	18	2.3	18	86	0	55	63	2	0	34	1.08
34336200--34336255	13	4.2	13	76	13	51	46	0	0	53	1.00
34339740--34339770	16	1.9	16	93	0	53	22	9	6	61	1.50
34349437--34349501	30	2.2	30	97	0	121	18	16	9	55	1.67
34349437--34349522	30	2.9	29	86	10	95	23	16	8	52	1.70
34357240--34357278	19	2.1	19	85	0	51	51	0	5	43	1.24
34357878--34357920	18	2.4	18	92	7	70	51	0	0	48	1.00
34358391--34358429	20	2.0	20	90	10	62	38	2	2	56	1.27
34359866--34359896	14	2.2	14	94	0	53	25	6	0	67	1.14
34359895--34359930	10	3.5	11	88	11	58	52	0	0	47	1.00
34378315--34378368	18	2.9	19	81	13	60	35	0	1	62	1.06
34378465--34378532	20	3.3	20	79	8	66	60	5	1	32	1.30
34378956--34379003	21	2.3	20	75	13	53	62	2	2	33	1.18
34384458--34384483	4	6.5	4	100	0	52	23	0	50	26	1.50
34388333--34388429	16	5.9	16	74	13	72	42	2	1	54	1.19
34388347--34388389	19	2.5	17	79	17	52	46	2	0	51	1.13
34391843--34391878	18	2.0	18	88	0	54	55	0	2	41	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34402477--34402514	20	1.9	20	84	10	51	65	2	0	31	1.06
34423128--34423273	58	2.5	58	81	11	174	46	2	2	49	1.25
34423443--34423498	16	3.5	16	90	0	94	26	30	5	37	1.79
34429485--34429528	18	2.5	17	78	7	52	47	2	13	36	1.56
34433035--34433070	19	1.9	19	88	5	56	22	5	30	41	1.76
34440284--34440320	18	2.1	18	89	0	56	48	0	27	24	1.51
34445038--34445084	16	2.8	16	83	6	58	29	10	17	42	1.82
34447669--34447710	17	2.4	18	84	11	61	66	2	0	30	1.04
34450600--34450650	19	2.7	19	79	11	52	33	0	7	58	1.27
34451561--34451603	22	2.0	22	81	9	52	58	11	11	18	1.63
34456992--34457025	16	2.0	16	88	11	50	44	5	0	50	1.26
34461427--34461480	23	2.3	23	83	0	63	40	14	29	14	1.86
34477929--34478038	49	2.2	49	100	0	220	26	28	15	30	1.96
34482536--34482560	13	1.9	13	100	0	50	24	0	12	64	1.27
34486141--34486194	22	2.5	22	77	14	67	42	0	5	51	1.25
34486140--34486188	21	2.3	21	83	10	64	40	0	6	53	1.26
34488062--34488371	78	4.0	79	91	4	488	16	20	23	39	1.92
34488062--34488366	153	2.0	152	91	3	486	16	19	24	39	1.91
34494600--34495043	112	4.0	112	87	2	601	35	21	18	24	1.95
34494600--34495043	221	2.0	222	85	4	610	35	21	18	24	1.95
34494988--34495086	36	2.8	36	85	1	137	26	22	20	31	1.98
34495153--34495245	36	2.6	36	86	3	116	27	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34504509--34504552	2	23.5	2	86	13	67	47	0	0	52	1.00
34516803--34516890	30	2.9	30	79	3	97	34	14	11	39	1.82
34517954--34518430	235	2.0	238	94	1	834	27	11	19	41	1.86
34528131--34528165	16	2.2	16	90	5	54	77	2	2	17	1.02
34536479--34536548	34	2.1	33	82	12	81	62	0	1	35	1.04
34536531--34536566	18	1.9	18	88	5	54	69	5	0	25	1.10
34537568--34537638	30	2.4	31	77	20	87	21	9	7	61	1.50
34547197--34547242	22	2.1	22	84	8	58	36	0	0	63	0.95
34547335--34547394	31	1.9	32	83	10	79	41	13	5	40	1.66
34548389--34548479	41	2.2	41	94	2	155	36	14	8	40	1.77
34556332--34556361	8	3.8	8	100	0	60	53	0	10	36	1.35
34556334--34556369	16	2.2	16	90	0	54	55	0	13	30	1.39
34569374--34569523	80	1.9	80	88	0	228	34	25	18	21	1.96
34574577--34574680	30	3.4	30	79	7	86	50	0	0	47	1.14
34574619--34574683	11	6.0	11	74	18	57	52	0	1	46	1.10
34574592--34574679	31	2.8	32	84	8	101	53	1	1	44	1.15
34574472--34574896	222	1.9	222	94	0	751	49	2	4	43	1.35
34574697--34574889	62	2.9	67	79	12	179	48	2	4	44	1.37
34575157--34576347	237	5.0	237	96	0	1999	27	30	21	20	1.98
34584715--34584744	2	15.0	2	100	0	60	50	0	50	0	1.00
34586528--34586553	2	13.0	2	100	0	52	50	0	0	50	1.00
34588454--34588614	58	2.8	58	87	2	209	44	11	14	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34589659--34589813	71	2.2	71	87	4	215	29	20	18	31	1.96
34589949--34590156	59	3.5	59	83	7	260	28	18	15	37	1.91
34591076--34591130	17	3.5	17	73	19	64	58	1	12	27	1.45
34591076--34591143	30	2.3	30	92	0	109	58	1	10	29	1.40
34591647--34591729	36	2.3	36	93	0	139	12	33	28	25	1.92
34593431--34593480	22	2.3	22	78	0	55	24	8	26	42	1.82
34593580--34593954	80	4.5	84	90	5	584	46	5	5	42	1.50
34593580--34593954	84	4.5	83	90	6	573	46	5	5	42	1.50
34594070--34594134	28	2.4	28	81	2	69	38	10	0	50	1.37
34596026--34596053	13	2.2	13	100	0	56	21	0	21	57	1.41
34597082--34597129	13	3.9	12	81	10	53	35	2	0	62	1.07
34597857--34598184	59	5.6	58	72	11	229	37	17	17	27	1.92
34597857--34598199	58	5.8	58	71	11	189	37	16	17	28	1.92
34605913--34605977	30	2.2	29	83	8	78	49	9	7	33	1.63
34621764--34621793	15	1.9	16	93	6	53	33	0	10	56	1.32
34626987--34627032	3	15.3	3	100	0	92	65	0	0	34	0.93
34628938--34628963	12	2.2	12	100	0	52	50	26	7	15	1.71
34630287--34630349	31	2.0	31	87	0	90	34	12	6	46	1.68
34638559--34638613	28	2.0	28	85	7	76	43	0	0	56	0.99
34638569--34638621	28	1.9	27	81	11	63	49	0	0	50	1.00
34638579--34638622	22	2.0	22	86	8	63	47	0	0	52	1.00
34655886--34655920	15	2.4	15	90	4	54	57	5	0	37	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34660227--34660285	21	2.6	24	71	20	63	37	6	40	15	1.74
34660235--34660274	21	1.9	21	90	10	64	40	10	35	15	1.80
34660390--34660423	3	11.3	3	93	0	59	32	2	35	29	1.73
34660426--34660469	18	2.4	18	85	7	54	50	0	45	4	1.22
34660438--34660478	9	4.6	9	87	0	64	53	0	43	2	1.13
34662196--34662238	9	4.6	9	77	11	50	34	0	2	62	1.08
34662193--34662246	20	2.6	21	72	13	58	35	0	1	62	1.06
34670408--34670472	33	2.0	33	96	0	121	46	6	16	30	1.72
34675378--34675428	21	2.4	21	80	6	59	39	9	7	43	1.67
34676919--34676964	24	1.9	23	86	8	65	56	6	4	32	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120