genome.fa.s5.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  12  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3301848--3301891	17	2.7	15	80	19	52	50	2	4	43	1.35
3312799--3313649	201	4.2	200	88	2	1145	37	20	23	18	1.94
3316582--3316625	17	2.7	15	80	19	52	43	4	2	50	1.35
3318455--3318793	58	5.8	59	84	4	420	33	30	2	34	1.70
3318480--3318824	117	3.0	115	83	7	416	31	32	2	33	1.71
3318495--3318708	29	7.3	29	69	20	142	30	33	2	33	1.72
3319522--3319601	28	2.8	29	77	18	80	40	21	2	36	1.67
3319590--3319653	28	2.2	28	80	2	74	31	31	7	29	1.86
3320863--3320930	22	3.2	22	64	16	52	22	17	19	41	1.91
3320862--3320966	42	2.5	42	88	0	156	23	15	19	41	1.89
3329213--3329245	15	2.2	15	94	0	57	33	0	0	66	0.92
3330443--3330486	8	5.4	8	79	15	54	2	11	2	84	0.81
3330443--3330476	15	2.3	15	94	0	59	0	11	2	85	0.71
3330333--3330601	145	1.9	145	95	0	493	26	21	13	39	1.90
3340462--3340518	30	1.9	30	92	7	98	40	17	5	36	1.72
3344680--3344710	3	10.3	3	100	0	62	32	0	0	67	0.91
3345421--3345465	14	3.1	14	75	6	54	60	0	4	35	1.17
3346540--3346616	35	2.1	38	85	9	106	50	1	1	46	1.17
3347075--3347114	16	2.5	17	80	19	50	35	5	0	60	1.19
3347751--3347823	31	2.4	30	82	10	96	65	4	1	28	1.19
3353946--3353978	8	4.2	8	92	7	59	36	0	0	63	0.95
3362938--3362998	30	2.0	30	84	6	79	27	4	4	62	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3366180--3366223	21	2.1	21	83	8	54	50	2	2	45	1.27
3370576--3370633	18	3.2	17	75	15	53	41	0	1	56	1.09
3372409--3372495	31	2.7	32	75	10	97	24	12	10	52	1.70
3374621--3374689	24	2.7	25	73	10	68	46	1	4	47	1.31
3374700--3374726	7	3.9	7	100	0	54	55	0	0	44	0.99
3375522--3375559	19	2.0	19	100	0	76	36	21	0	42	1.53
3378327--3378383	29	2.0	27	83	12	71	43	0	0	56	0.99
3379689--3379717	14	2.1	14	93	6	51	31	31	13	24	1.94
3390604--3390653	26	1.9	26	88	8	75	64	8	12	16	1.49
3395596--3395623	1	28.0	1	100	0	56	0	100	0	0	0.00
3400623--3400669	22	2.2	21	84	3	58	70	2	8	19	1.24
3405892--3405947	22	2.5	22	94	0	94	23	32	23	21	1.98
3405893--3405947	11	5.0	11	84	0	74	21	32	23	21	1.98
3406995--3407261	24	11.4	23	84	2	273	20	15	19	43	1.87
3407016--3407190	35	5.0	35	73	15	164	21	13	18	46	1.83
3406996--3407262	70	3.8	70	88	1	327	20	15	19	44	1.87
3407615--3407646	10	3.2	10	95	0	55	34	21	3	40	1.69
3410148--3410213	33	2.0	33	94	2	116	40	18	21	19	1.91
3410880--3410930	26	2.0	26	100	0	102	35	11	17	35	1.87
3411857--3411963	12	9.2	12	85	4	121	48	20	14	16	1.81
3412297--3412336	3	13.7	3	92	5	64	27	2	0	70	1.01
3418035--3418188	29	5.2	28	69	19	80	27	1	35	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3418007--3418147	61	2.3	62	81	6	182	29	0	32	36	1.63
3418105--3418188	29	3.0	27	83	10	105	27	2	36	33	1.70
3418923--3418974	27	2.0	26	82	14	63	26	7	3	61	1.41
3419262--3419294	16	2.1	16	94	0	57	42	3	0	54	1.15
3420419--3421069	201	3.2	199	89	3	982	19	23	20	36	1.95
3433169--3433421	58	4.4	58	89	3	375	31	2	32	34	1.71
3433169--3433421	115	2.2	116	89	2	393	31	2	32	34	1.71
3433169--3433461	30	10.1	28	69	14	141	31	2	32	33	1.72
3433726--3433789	32	2.0	33	84	9	87	59	4	14	21	1.53
3434165--3434213	26	2.0	25	84	8	64	26	8	4	61	1.42
3434176--3434226	26	2.0	25	82	14	61	27	7	3	60	1.42
3434512--3434544	16	2.1	16	94	0	57	42	3	0	54	1.15
3434963--3435008	17	2.7	18	83	10	60	36	0	2	60	1.09
3437100--3437131	15	2.1	15	100	0	64	0	12	12	75	1.06
3451441--3451510	29	2.4	30	76	11	72	51	5	1	41	1.34
3456020--3456085	30	2.2	30	75	2	71	25	16	19	37	1.93
3457009--3457087	29	2.7	28	82	7	86	62	5	2	30	1.30
3485049--3485086	18	2.1	18	85	9	51	44	2	2	50	1.30
3506570--3506948	193	2.0	193	84	4	496	25	25	20	29	1.99
3506648--3507020	201	1.9	191	81	5	449	26	26	19	28	1.98
3509679--3509732	20	2.7	20	82	5	56	51	31	1	14	1.53
3511233--3511539	29	10.5	29	80	10	256	38	24	0	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3511231--3511539	117	2.7	117	82	6	353	37	24	0	36	1.63
3513242--3513293	21	2.5	21	81	6	61	28	28	13	28	1.94
3516880--3516913	17	2.0	17	100	0	68	70	11	5	11	1.32
3527942--3527993	22	2.3	23	90	6	88	11	25	25	38	1.89
3535091--3535132	21	2.0	20	82	13	50	35	16	0	47	1.47
3544414--3544791	190	2.0	190	95	1	677	34	21	19	24	1.97
3545538--3545604	33	2.0	33	97	0	125	34	5	19	40	1.76
3547723--3547792	11	6.6	11	72	18	51	61	1	2	34	1.20
3547713--3547796	9	8.3	10	68	21	50	63	1	2	33	1.15
3547715--3547845	19	6.7	19	73	19	85	63	2	3	31	1.22
3547714--3547846	10	13.7	9	72	18	74	63	2	3	30	1.21
3547715--3547846	38	3.4	36	75	14	104	63	2	3	31	1.22
3556840--3556873	5	6.8	5	93	0	59	17	44	0	38	1.49
3560559--3560627	18	3.7	20	71	23	69	39	0	1	59	1.06
3560559--3560617	19	3.1	18	80	9	55	37	0	1	61	1.07
3560569--3560625	16	3.3	17	72	18	55	40	0	1	57	1.09
3564410--3564462	18	3.0	18	86	2	63	69	1	3	24	1.15
3564509--3564595	19	4.8	18	72	14	63	59	0	3	36	1.14
3564509--3564594	18	4.7	18	73	13	70	59	0	3	37	1.15
3564572--3564614	20	2.1	21	83	8	54	60	0	9	30	1.28
3565722--3565768	20	2.5	20	83	16	64	23	8	8	59	1.54
3565727--3565788	20	3.2	19	82	15	58	22	8	6	62	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3565760--3565807	19	2.5	19	80	10	53	31	4	4	60	1.35
3565755--3565802	19	2.5	19	86	10	62	29	4	4	62	1.32
3565771--3565813	21	2.1	20	82	4	50	34	2	9	53	1.46
3585323--3585354	6	5.5	6	96	3	57	71	12	0	15	1.14
3585642--3585703	19	3.4	19	66	6	56	53	0	3	43	1.17
3586495--3586536	21	2.0	20	82	13	50	28	7	2	61	1.35
3586886--3586925	19	2.2	19	86	4	55	67	10	0	22	1.20
3590740--3590774	6	5.8	6	100	0	70	14	51	0	34	1.42
3592068--3592113	17	2.7	16	86	10	56	36	0	0	63	0.95
3598234--3598272	16	2.4	16	83	16	53	51	0	0	48	1.00
3599382--3599420	13	2.9	13	82	17	53	35	0	2	61	1.10
3599814--3599865	23	2.2	23	79	3	59	30	11	17	40	1.85
3599849--3599894	23	2.0	23	87	8	67	45	10	10	32	1.74
3600339--3600661	158	2.0	159	99	0	639	50	7	7	34	1.59
3611334--3611387	19	2.9	18	81	8	56	53	11	0	35	1.36
3620342--3620391	17	2.7	19	81	9	59	62	0	8	30	1.24
3620342--3620381	19	2.0	20	85	4	55	60	0	10	30	1.30
3622012--3622042	2	15.5	2	93	0	53	51	3	0	45	1.17
3629765--3629881	60	2.0	60	93	3	200	37	10	17	35	1.83
3630177--3630237	29	2.1	30	84	3	79	54	3	4	37	1.39
3630467--3630499	16	2.1	16	88	11	50	60	6	0	33	1.21
3630679--3630738	30	2.0	31	87	9	88	36	1	6	55	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3631663--3631730	31	2.2	32	86	2	93	16	16	14	52	1.74
3636655--3636717	21	3.3	21	63	28	59	55	3	12	28	1.52
3636651--3636722	35	2.0	36	97	2	137	54	2	15	27	1.55
3636953--3637012	31	1.9	31	86	0	84	58	6	6	28	1.49
3638335--3638374	11	3.7	11	83	16	57	67	17	7	7	1.38
3638321--3638386	32	2.1	32	85	0	87	66	18	7	7	1.40
3638338--3638405	24	3.1	21	80	13	75	70	16	4	8	1.29
3638409--3638491	21	4.3	19	79	14	89	67	19	7	6	1.36
3638409--3638460	17	2.9	17	91	5	77	69	19	7	3	1.29
3639229--3639292	25	2.4	26	82	10	76	51	1	6	40	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120