genome.fa.s5.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  46  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12780498--12780671	40	4.3	40	82	5	201	32	22	19	25	1.98
12787502--12787574	25	2.9	25	82	8	78	58	2	0	38	1.12
12787511--12787599	8	10.8	8	74	6	70	51	2	1	44	1.21
12806444--12806777	24	13.9	24	85	0	434	32	15	25	26	1.95
12807193--12807270	26	3.0	26	68	20	63	38	0	17	43	1.50
12809504--12809598	26	3.6	26	87	4	120	53	3	1	42	1.23
12817732--12817905	89	2.0	88	90	1	276	29	14	18	37	1.90
12819696--12819883	59	3.2	58	90	3	279	32	2	30	33	1.72
12819697--12819866	29	5.8	29	72	20	140	31	2	31	34	1.73
12819730--12819885	29	5.3	28	73	21	115	33	1	30	33	1.69
12821756--12821801	17	2.7	18	83	10	60	36	0	2	60	1.09
12823124--12823217	38	2.5	38	72	17	97	29	13	23	32	1.93
12828552--12828614	19	3.2	20	81	6	74	31	6	12	49	1.66
12828552--12828620	20	3.5	20	82	6	86	31	7	13	47	1.69
12841401--12841490	19	4.6	19	79	5	90	31	7	12	48	1.69
12841582--12841631	22	2.2	23	82	3	57	38	6	2	54	1.37
12844183--12844223	7	6.1	7	88	2	50	73	9	2	14	1.19
12851478--12851528	22	2.3	22	79	0	66	37	25	25	11	1.90
12857161--12857185	13	1.9	13	100	0	50	76	8	0	16	1.02
12867486--12867740	28	9.1	28	70	8	144	24	18	21	35	1.96
12881218--12881252	12	2.9	12	91	0	52	17	5	0	77	0.96
12881218--12881252	17	2.1	17	89	10	54	17	5	0	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12887499--12887537	7	5.1	7	82	17	51	79	0	15	5	0.90
12891686--12891730	21	2.1	21	91	0	72	73	4	13	8	1.23
12893773--12893806	17	2.1	16	88	5	50	38	0	14	47	1.45
12898789--12898826	14	2.6	16	80	20	55	78	5	0	15	0.91
12898789--12898825	19	1.9	19	89	10	58	81	2	0	16	0.81
12898789--12898825	5	7.6	5	82	17	51	81	2	0	16	0.81
12904796--12904839	23	2.0	22	86	4	61	45	15	0	38	1.47
12910720--12910759	17	2.3	18	86	4	55	5	32	7	55	1.50
12920832--12920886	27	1.9	30	82	10	71	7	18	3	70	1.25
12921459--12921483	13	1.9	13	100	0	50	76	8	0	16	1.02
12927550--12927743	56	3.5	56	78	5	205	25	18	20	36	1.94
12927550--12927741	28	6.9	28	69	13	101	25	17	20	36	1.94
12927709--12927803	28	3.4	28	75	8	86	20	14	29	35	1.92
12934165--12935176	504	2.0	505	99	0	1983	33	7	21	37	1.81
12935255--12935539	28	10.2	28	70	6	148	22	18	23	35	1.96
12935234--12935357	56	2.2	57	78	4	144	25	18	21	34	1.96
12935251--12935539	84	3.4	83	84	7	343	21	19	23	35	1.96
12953499--12953544	20	2.3	20	85	10	60	76	6	2	15	1.09
12954284--12954462	24	6.9	26	70	14	104	35	17	27	18	1.94
12954282--12954693	52	7.9	52	84	0	473	34	16	27	21	1.95
12957231--12957263	10	3.3	10	95	0	57	33	9	39	18	1.82
12957556--12957618	32	2.0	32	90	0	99	41	17	9	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12957664--12957762	39	2.5	40	85	4	148	55	15	5	24	1.60
12957682--12957762	38	2.1	39	93	2	137	59	12	4	23	1.52
12963238--12963264	13	2.1	13	100	0	54	0	29	0	70	0.88
12978093--12978214	60	2.0	61	90	3	192	34	31	10	22	1.89
12983646--12983679	17	2.0	17	88	0	50	26	2	0	70	1.01
12986284--12986342	24	2.5	24	88	0	82	28	15	8	47	1.74
12988272--12988351	29	2.7	31	78	14	82	65	0	5	30	1.14
13003040--13003131	31	3.0	31	98	1	177	39	16	6	38	1.74
13004422--13004520	52	1.9	52	87	0	144	35	26	15	23	1.94
13025217--13025263	21	2.2	21	88	0	76	27	19	25	27	1.99
13026784--13026819	19	1.9	19	88	5	56	16	19	11	52	1.73
13039907--13040407	23	21.8	23	85	0	592	33	5	13	46	1.67
13040462--13040574	36	3.1	36	84	5	156	27	9	25	37	1.87
13046421--13046526	38	3.1	33	80	12	108	53	4	15	26	1.61
13048284--13048338	27	2.0	27	96	0	101	30	9	3	56	1.48
13051324--13053378	153	13.4	153	80	4	1973	35	10	18	35	1.86
13051447--13053378	305	6.3	306	81	4	2035	35	11	17	35	1.86
13051447--13059282	461	16.9	454	71	11	2903	35	12	17	34	1.87
13054321--13055235	152	6.0	153	81	3	878	35	10	16	37	1.83
13055238--13059349	153	26.8	153	80	5	4031	35	10	18	35	1.85
13055238--13059349	308	13.4	306	80	4	4082	35	10	18	35	1.85
13055238--13059349	461	8.9	457	80	5	4043	35	10	18	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13069119--13069173	24	2.3	24	90	0	83	23	10	1	63	1.36
13069131--13069189	24	2.5	24	80	0	64	30	11	3	54	1.53
13069188--13069229	22	1.9	22	90	0	66	21	19	7	52	1.69
13071056--13071101	24	1.9	24	95	0	83	23	6	8	60	1.49
13071061--13071109	24	2.0	24	92	0	80	22	10	10	57	1.62
13075117--13075168	20	2.5	22	76	14	58	21	23	19	36	1.95
13075118--13075178	20	3.1	19	72	9	50	16	26	21	36	1.94
13087381--13087405	13	1.9	13	100	0	50	20	24	16	40	1.91
13088448--13088493	3	14.7	3	86	8	65	32	0	0	67	0.91
13096536--13096581	22	2.1	22	84	4	58	28	28	32	10	1.91
13096570--13096652	21	4.0	21	77	0	76	34	21	28	14	1.93
13096572--13096678	42	2.5	42	81	0	124	32	19	29	17	1.95
13096616--13096682	21	3.2	20	81	8	80	28	19	31	20	1.97
13100341--13100578	52	4.6	52	85	3	273	26	15	25	32	1.95
13101795--13101941	33	4.4	33	63	19	81	31	27	22	18	1.97
13108383--13108544	86	1.9	86	92	0	270	38	6	20	33	1.79
13115044--13115085	19	2.3	19	87	4	59	64	2	0	33	1.07
13115658--13115712	22	2.5	22	88	5	76	60	14	12	12	1.60
13116998--13117042	21	2.1	21	88	8	65	62	0	0	37	0.96
13117242--13117291	21	2.3	21	79	3	55	44	6	14	36	1.69
13117522--13117553	12	2.8	12	86	13	50	34	0	9	56	1.32
13117827--13117866	3	13.3	3	100	0	80	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13118793--13118830	20	1.9	20	89	10	60	36	5	5	52	1.47
13119402--13119439	20	1.9	20	88	0	58	7	7	10	73	1.24
13149883--13149915	11	2.8	12	81	9	50	54	15	15	15	1.71
13155970--13157346	685	2.0	682	98	0	2693	32	23	15	28	1.95
13161436--13161477	21	2.0	22	85	4	59	33	9	9	47	1.68
13163761--13163828	19	3.6	19	91	0	118	4	44	14	36	1.66
13164649--13164687	18	2.3	18	86	8	55	48	0	2	48	1.15
13166589--13166678	27	3.3	27	87	3	128	22	16	35	25	1.95
13166601--13166690	27	3.3	27	83	6	85	24	17	32	25	1.97
13167043--13167228	26	7.1	26	86	2	230	31	2	10	56	1.45
13167043--13167228	52	3.5	52	88	1	255	31	2	10	56	1.45
13167639--13167699	21	2.9	22	74	16	65	13	0	27	59	1.35
13167627--13167699	35	2.1	36	82	7	87	15	0	26	58	1.37
13175890--13175955	27	2.4	27	82	0	78	24	18	27	30	1.98
13178235--13178518	144	2.0	144	92	2	482	35	10	20	33	1.87
13178668--13178906	53	4.6	52	84	9	274	24	12	23	39	1.90
13178673--13178906	104	2.2	105	84	7	298	24	12	23	39	1.90
13182762--13182795	17	2.0	17	88	0	50	55	11	17	14	1.68
13187239--13187282	17	2.5	18	85	10	56	61	11	11	15	1.57
13214409--13214581	72	2.4	71	76	5	179	31	16	22	28	1.96
13215576--13215608	6	5.5	6	100	0	66	0	15	48	36	1.45
13219567--13219618	18	2.9	17	76	21	52	38	3	1	55	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13219984--13220025	16	2.6	16	81	7	50	73	4	4	16	1.17
13221085--13221126	17	2.3	18	88	12	59	38	2	0	59	1.10
13221163--13221226	33	1.9	33	96	0	119	43	14	18	23	1.86
13235575--13235673	48	2.1	48	98	0	189	56	9	8	26	1.58
13244406--13244473	31	2.2	30	80	15	77	22	11	22	44	1.85
13244205--13244483	153	1.8	153	87	3	418	28	17	18	34	1.94
13253995--13254071	14	5.6	13	71	18	50	80	0	14	5	0.87
13253995--13254037	22	1.9	23	90	4	70	83	0	9	6	0.80
13254033--13254071	15	2.7	14	84	4	51	79	0	17	2	0.84
13254018--13254074	21	2.9	19	75	14	53	77	0	19	3	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120