genome.fa.s5.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  103  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29761224--29761263	19	2.1	19	85	0	53	17	7	37	37	1.78
29761854--29761886	17	1.9	17	93	0	57	39	0	0	60	0.97
29761926--29761988	22	3.0	20	71	13	63	41	3	0	55	1.16
29764191--29764738	292	1.9	292	94	1	965	28	11	27	32	1.91
29767149--29767194	23	2.0	23	95	0	83	36	0	0	63	0.95
29772644--29772682	18	2.2	18	100	0	78	33	5	23	38	1.77
29774712--29774752	17	2.3	18	91	8	66	51	12	4	31	1.60
29776193--29776238	19	2.4	19	85	0	56	41	0	2	56	1.11
29778461--29778493	16	2.2	15	89	10	50	18	0	0	81	0.68
29781561--29781590	2	15.0	2	100	0	60	50	0	0	50	1.00
29786481--29786523	21	2.1	20	82	4	50	60	9	6	23	1.51
29793131--29793155	6	4.2	6	100	0	50	52	0	0	48	1.00
29799661--29799704	22	2.0	22	86	0	61	45	0	2	52	1.13
29799780--29799814	18	1.9	18	88	0	52	22	0	8	68	1.16
29800493--29800539	24	2.0	23	87	4	67	42	0	2	55	1.12
29806986--29807038	11	4.8	11	79	6	54	24	5	1	67	1.22
29806981--29807038	22	2.6	22	83	0	80	22	5	3	68	1.24
29807039--29807088	18	2.7	18	82	11	57	22	0	12	66	1.24
29807198--29807248	12	3.9	13	76	14	52	27	0	3	68	1.07
29810150--29810205	28	1.9	30	85	7	80	66	7	1	25	1.27
29810565--29810626	30	2.1	30	100	0	124	41	17	3	37	1.66
29814232--29814281	18	2.9	18	80	16	61	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29816762--29816799	19	2.0	19	94	0	67	28	0	7	63	1.23
29818837--29818908	35	2.1	35	94	0	126	19	23	9	47	1.79
29821860--29821939	14	5.8	14	70	15	60	70	1	2	26	1.08
29843391--29843435	18	2.6	17	82	6	63	26	8	13	51	1.70
29846400--29846615	88	2.4	88	78	7	231	42	10	8	38	1.69
29846424--29846629	89	2.3	90	77	9	224	40	11	8	40	1.71
29846704--29846864	9	17.3	9	69	16	80	63	1	3	31	1.17
29846727--29846804	29	2.8	26	74	18	68	58	1	1	38	1.14
29846746--29846808	29	2.2	29	86	11	85	58	1	0	39	1.07
29846757--29846864	29	3.8	29	77	10	98	63	1	2	31	1.19
29846787--29846879	28	3.3	27	73	16	82	63	2	6	27	1.30
29846833--29846925	40	2.4	39	80	14	102	63	2	9	24	1.36
29846787--29846904	10	12.3	9	69	17	51	65	1	6	26	1.27
29847136--29847161	11	2.4	11	100	0	52	15	7	0	76	0.99
29847154--29847202	21	2.5	19	80	12	55	42	0	0	57	0.99
29851899--29851939	20	2.0	21	85	9	57	24	26	0	48	1.51
29852477--29852551	38	2.0	37	82	7	89	40	6	0	53	1.27
29854941--29855031	45	2.0	45	93	0	155	27	15	13	43	1.83
29859717--29859757	21	1.9	22	90	5	66	7	9	14	68	1.39
29859754--29859805	12	4.3	12	80	9	52	13	5	11	69	1.35
29859786--29859912	44	2.9	43	84	2	164	11	6	14	67	1.39
29859754--29859851	24	4.3	23	71	16	78	12	6	13	68	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29860828--29860853	6	4.3	6	100	0	52	80	0	0	19	0.71
29864199--29864227	11	2.7	11	94	5	51	27	0	0	72	0.85
29873619--29873675	31	1.9	30	86	10	82	49	14	12	24	1.77
29879301--29879325	11	2.3	11	100	0	50	44	0	0	56	0.99
29881890--29881924	13	2.6	13	90	4	52	71	0	2	25	1.00
29883116--29883167	24	2.1	25	92	3	88	26	9	5	57	1.53
29885092--29885152	24	2.5	24	97	0	113	29	13	6	50	1.66
29886900--29886936	18	2.1	18	89	0	56	48	0	27	24	1.51
29891246--29891304	29	2.0	29	96	0	109	28	25	11	33	1.91
29894694--29894727	18	1.9	17	88	5	50	35	0	5	58	1.22
29895362--29895420	29	2.0	30	96	3	111	32	6	13	47	1.69
29895610--29895673	31	2.1	30	82	5	76	40	10	10	37	1.76
29896469--29896530	23	2.7	23	80	7	74	53	1	1	43	1.20
29898926--29898950	4	6.2	4	100	0	50	24	0	24	52	1.48
29905529--29905575	14	3.4	14	77	11	51	29	0	2	68	1.02
29915515--29915567	25	2.0	27	92	7	92	47	0	3	49	1.19
29917254--29917321	31	2.1	33	91	5	113	30	13	16	39	1.86
29925499--29925536	9	4.2	9	96	0	58	15	10	68	5	1.36
29929311--29929340	15	2.1	14	93	6	51	43	3	0	53	1.17
29954178--29954223	22	2.1	22	100	0	92	17	13	39	30	1.87
29958372--29958406	16	2.2	16	100	0	70	40	0	0	60	0.97
29974888--29974992	51	2.1	51	88	0	156	20	21	26	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29974888--29974973	28	3.3	27	70	21	83	22	23	25	29	1.99
29980269--29980327	29	2.0	30	83	9	77	28	10	15	45	1.78
29983052--29983091	13	3.1	13	88	0	62	55	0	0	45	0.99
29984237--29984261	6	4.2	6	100	0	50	48	0	0	52	1.00
29993238--29993280	21	2.0	21	100	0	86	30	4	13	51	1.62
30000637--30000670	18	2.0	16	88	11	50	35	0	5	58	1.22
30001246--30001334	29	3.0	28	77	16	81	55	2	3	39	1.29
30002262--30002299	7	5.4	7	100	0	76	57	0	28	13	1.36
30002260--30002307	21	2.3	21	89	10	80	56	0	31	12	1.37
30007018--30007254	118	2.0	118	94	0	420	32	16	18	33	1.93
30012755--30012819	29	2.2	29	80	0	76	44	16	3	35	1.64
30013727--30013796	31	2.3	31	84	0	86	37	5	12	44	1.67
30020109--30020157	21	2.3	22	89	10	75	65	4	2	28	1.22
30042729--30042913	86	2.2	81	81	8	228	45	21	10	22	1.82
30042750--30042913	86	1.9	84	88	2	247	44	20	11	23	1.84
30046634--30046711	30	2.6	29	78	8	77	43	23	11	21	1.85
30054377--30054409	16	2.1	16	88	11	50	21	0	9	69	1.15
30063374--30063427	4	13.5	4	92	0	90	25	1	25	46	1.63
30070780--30070856	18	4.3	18	73	4	57	59	24	5	10	1.50
30070817--30070855	6	6.5	6	81	0	51	64	30	2	2	1.21
30070903--30071127	13	17.7	13	67	14	67	49	19	4	27	1.66
30070903--30071124	52	4.4	49	79	8	169	48	19	4	27	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30070903--30070994	24	3.8	24	90	5	148	44	18	3	33	1.66
30070989--30071129	52	2.7	53	83	5	171	52	19	4	23	1.64
30071028--30071215	26	7.2	26	73	8	130	52	22	3	21	1.62
30071067--30071168	20	5.2	20	75	13	86	53	18	2	24	1.58
30071058--30071136	6	12.3	6	74	12	68	49	20	3	26	1.66
30070906--30071127	12	17.5	12	68	10	93	49	18	4	27	1.66
30071040--30071214	13	13.4	13	71	16	85	53	20	4	22	1.62
30071087--30071168	33	2.5	33	84	11	98	56	18	2	23	1.54
30071157--30071232	26	2.9	26	84	0	89	52	22	5	19	1.66
30071052--30071259	105	2.0	105	81	7	244	53	21	3	21	1.62
30071157--30071344	85	2.2	85	83	5	229	52	23	5	18	1.66
30071244--30071314	26	2.7	25	77	16	72	50	22	8	18	1.73
30071308--30071412	33	3.1	34	82	8	133	60	22	0	16	1.42
30071336--30071365	13	2.3	13	94	0	51	66	23	0	10	1.21
30071402--30071470	13	5.4	13	75	14	63	50	31	0	17	1.46
30071402--30071469	26	2.6	25	88	2	91	50	32	0	17	1.47
30071443--30071487	20	2.2	21	88	4	65	51	26	2	20	1.59
30071462--30071569	14	8.3	13	70	15	57	56	26	6	10	1.57
30071430--30071503	33	2.3	32	81	9	87	55	28	2	13	1.52
30071682--30071757	33	2.3	33	90	2	127	53	25	0	21	1.45
30071774--30072914	7	174.7	7	67	22	210	44	29	0	26	1.58
30071774--30072905	13	87.8	13	66	18	133	44	29	0	26	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30071755--30071938	78	2.4	77	81	7	214	42	26	0	29	1.59
30071774--30072914	20	57.6	20	66	20	206	44	29	0	26	1.58
30071975--30072182	102	2.0	100	81	9	235	42	31	0	25	1.59
30072036--30072774	6	116.5	6	68	16	73	43	31	0	24	1.58
30072009--30072764	26	29.7	26	68	18	171	43	31	0	24	1.58
30072152--30072348	76	2.6	75	76	8	209	45	31	0	22	1.53
30072497--30072637	57	2.5	57	76	13	64	44	29	0	25	1.59
30076420--30076493	29	2.6	29	75	12	71	40	2	21	35	1.68
30076499--30076594	29	3.3	29	84	4	104	32	5	27	35	1.79
30076548--30076653	29	3.7	29	82	8	110	34	3	24	36	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120