genome.fa.s5.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  26  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6768622--6768654	18	1.9	17	88	11	50	72	6	3	18	1.18
6772594--6772621	6	4.7	6	100	0	56	17	67	14	0	1.22
6775402--6775467	29	2.3	29	86	0	87	46	0	6	46	1.27
6776437--6776471	18	1.9	18	94	0	61	8	25	0	65	1.21
6776519--6776549	15	2.1	15	93	0	53	41	19	3	35	1.67
6776519--6776564	18	2.6	18	78	0	56	36	21	2	39	1.66
6780588--6780614	13	2.1	13	100	0	54	29	14	7	48	1.71
6781415--6781489	28	2.5	31	82	12	93	28	8	9	54	1.60
6781447--6781507	31	1.9	32	86	3	88	29	8	8	54	1.59
6781932--6781999	15	4.4	15	71	16	50	51	1	0	47	1.09
6782401--6782467	27	2.5	27	90	0	107	23	26	32	16	1.96
6784858--6784898	15	2.9	15	79	13	52	31	0	0	68	0.90
6786181--6786207	14	1.9	14	100	0	54	29	0	11	59	1.32
6798156--6798243	15	6.0	14	68	17	54	47	0	2	50	1.13
6798147--6798282	58	2.3	58	82	10	163	47	1	1	50	1.19
6801842--6801987	58	2.5	58	81	11	174	45	2	1	50	1.24
6802071--6802175	46	2.5	44	82	13	114	37	25	5	31	1.80
6802082--6802175	44	2.1	44	86	7	127	37	26	5	30	1.79
6802157--6802212	16	3.5	16	90	0	94	28	30	5	35	1.80
6806399--6806448	25	2.0	25	100	0	100	44	8	8	40	1.63
6808361--6808403	17	2.7	16	83	16	54	58	0	2	39	1.11
6808361--6808407	15	2.9	16	84	12	53	59	0	2	38	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6808485--6808524	17	2.4	16	84	8	53	37	12	5	45	1.64
6810216--6810307	30	2.7	36	70	23	99	29	28	11	30	1.92
6810301--6810367	30	2.2	30	86	0	89	28	23	19	28	1.98
6810196--6810353	66	2.4	66	83	2	210	29	26	13	30	1.94
6811470--6811542	35	2.1	35	100	0	146	32	26	10	30	1.90
6819150--6819183	6	5.7	6	100	0	68	32	50	0	17	1.47
6823549--6823614	32	2.1	32	82	5	80	40	1	6	51	1.36
6833836--6833875	2	20.0	2	100	0	80	50	0	0	50	1.00
6834532--6834558	14	1.9	14	100	0	54	59	7	14	18	1.58
6834556--6834984	230	1.9	225	87	5	639	30	23	17	28	1.97
6837598--6837662	29	2.2	29	94	0	112	52	13	9	24	1.70
6837610--6837678	29	2.4	29	90	0	102	53	14	5	26	1.63
6838614--6838654	20	2.0	21	85	4	57	7	7	17	68	1.36
6840704--6840738	17	2.1	17	100	0	70	34	0	20	45	1.51
6841188--6841221	2	17.0	2	100	0	68	0	50	0	50	1.00
6841221--6841257	2	18.0	2	88	5	56	45	2	0	51	1.15
6849999--6850032	9	3.9	9	96	3	61	52	11	0	35	1.38
6850049--6850084	18	1.9	19	94	5	65	27	2	8	61	1.39
6855153--6855187	6	5.8	6	100	0	70	51	0	31	17	1.45
6855334--6855405	25	2.8	25	87	6	92	40	6	19	33	1.78
6855928--6856008	37	2.2	37	88	0	117	37	11	18	33	1.86
6857057--6857166	49	2.2	49	79	3	123	38	20	19	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6865559--6865637	15	5.1	16	81	7	83	36	13	6	43	1.70
6866351--6866388	20	1.9	19	89	5	58	60	18	0	21	1.36
6866743--6866860	48	2.4	49	81	5	132	41	19	16	22	1.90
6867041--6867135	35	2.7	35	88	0	127	35	16	20	27	1.94
6875363--6875492	51	2.5	51	89	0	206	28	14	25	31	1.95
6876982--6877136	25	6.1	26	81	2	88	36	24	15	23	1.94
6877014--6877151	25	5.5	25	85	2	161	34	28	15	21	1.94
6882211--6882240	15	1.9	15	93	6	51	83	3	0	13	0.77
6882212--6882251	21	1.9	21	94	0	71	82	2	2	12	0.87
6882202--6882246	11	4.2	11	83	11	58	82	2	0	15	0.77
6885329--6885353	3	8.3	3	100	0	50	68	0	0	32	0.90
6885589--6885792	9	21.0	9	68	18	65	60	4	2	32	1.32
6885688--6885743	23	2.5	21	77	13	58	67	1	5	25	1.21
6885709--6885792	10	8.5	10	76	10	57	63	2	3	30	1.24
6885550--6885792	19	12.7	19	66	18	87	60	4	3	32	1.32
6894291--6894338	21	2.3	21	79	10	55	14	4	29	52	1.60
6895516--6895549	3	11.3	3	100	0	68	67	0	0	32	0.91
6896009--6896056	21	2.3	21	85	7	62	60	2	0	37	1.09
6898529--6898573	21	2.2	20	88	4	63	33	0	2	64	1.06
6902066--6902255	60	3.2	58	78	7	202	24	12	12	51	1.74
6902395--6902542	58	2.6	57	80	7	165	50	10	16	23	1.75
6902403--6902562	58	2.7	57	77	8	146	48	12	15	23	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6905210--6905239	15	1.9	16	93	6	53	70	0	0	30	0.88
6905555--6905624	31	2.4	30	81	11	74	60	2	2	34	1.26
6906259--6906284	12	2.2	12	100	0	52	0	23	0	76	0.78
6930221--6930275	25	2.2	25	83	0	65	27	12	18	41	1.86
6930195--6930319	50	2.5	50	83	6	137	24	14	22	39	1.91
6938505--6938628	25	4.9	25	80	1	140	22	16	26	33	1.96
6942128--6942205	22	3.6	22	67	11	63	2	23	0	74	0.94
6943180--6943209	7	4.1	7	91	8	51	83	0	16	0	0.65
6943180--6943209	15	2.1	15	93	6	53	83	0	16	0	0.65
6945746--6945890	47	3.1	47	94	0	254	50	22	4	23	1.66
6945781--6945855	24	3.2	24	62	11	64	49	24	2	24	1.63
6945787--6945860	23	3.2	23	62	11	60	51	21	2	24	1.61
6947426--6947692	145	1.8	145	97	0	507	28	14	18	38	1.90
6950538--6950600	30	2.1	30	84	0	81	22	3	19	55	1.57
6950657--6950692	17	2.2	17	90	5	56	50	2	2	44	1.31
6951301--6951381	23	3.5	23	86	1	117	40	18	12	28	1.87
6951474--6951520	12	4.0	12	83	2	60	44	17	17	21	1.86
6951474--6951520	24	2.0	23	87	4	67	44	17	17	21	1.86
6954425--6954469	23	2.0	24	86	8	67	31	0	0	68	0.89
6960528--6961361	312	2.6	315	92	3	1381	32	13	18	34	1.91
6967493--6967545	18	2.9	18	83	10	63	62	1	35	0	1.06
6967950--6968009	17	3.5	17	77	8	68	21	10	8	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6978262--6978331	27	2.6	26	84	11	79	74	1	8	15	1.13
6979777--6979825	23	2.1	23	85	7	64	18	4	24	53	1.62
6982541--6982615	26	2.9	27	72	9	75	46	2	6	44	1.43
6982626--6982696	37	1.9	37	86	11	101	59	2	1	36	1.21
6986103--6986180	34	2.3	34	79	0	84	44	15	8	30	1.77
6991435--6991478	22	2.0	22	82	8	54	59	4	4	31	1.38
6992433--6992474	17	2.4	17	80	11	50	54	4	0	40	1.21
6999994--7000036	17	2.5	17	82	10	52	60	0	2	37	1.10
7006466--7006494	6	4.8	6	100	0	58	34	34	17	13	1.89
7011566--7011615	23	2.2	23	85	0	64	40	12	20	28	1.87
7011812--7011986	54	3.3	54	82	4	187	37	15	18	28	1.91
7011847--7012003	53	2.9	54	82	0	190	36	14	19	28	1.92
7011930--7012091	81	2.0	82	81	3	193	40	16	18	24	1.90
7012011--7012230	54	4.1	54	82	1	246	40	15	16	27	1.89
7012035--7012260	107	2.1	107	85	4	294	40	14	16	28	1.88
7013560--7013661	36	2.8	37	82	4	118	21	23	16	38	1.93
7021296--7021329	12	2.8	12	86	0	50	52	2	0	44	1.16
7021298--7021392	18	5.6	17	67	16	56	51	3	5	40	1.40
7021300--7021392	33	2.8	32	76	9	82	51	3	5	39	1.41
7022484--7022573	29	3.0	31	72	21	82	32	25	5	36	1.79
7022484--7022655	58	2.9	59	79	10	149	32	23	5	37	1.79
7022518--7022647	29	4.5	28	77	14	108	34	23	3	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7022546--7022976	59	7.4	57	80	7	397	31	20	6	41	1.78
7022572--7022915	118	2.9	117	86	3	449	31	20	6	41	1.79
7022572--7022976	177	2.3	177	84	4	534	31	20	6	41	1.78
7033171--7033357	94	2.0	93	93	1	320	38	5	18	36	1.75
7035911--7035957	25	2.0	23	87	8	67	31	2	6	59	1.34
7043311--7043485	92	1.9	88	86	4	242	40	20	7	32	1.80
7043578--7043621	22	2.0	22	86	4	63	52	2	2	43	1.26
7043819--7044005	9	20.2	9	67	19	84	29	4	3	62	1.31
7043843--7043964	56	2.2	56	85	8	160	29	4	3	62	1.32
7043907--7044003	36	2.6	37	85	9	126	27	4	2	65	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120