genome.fa.s5.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  105  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30515722--30515802	29	2.8	28	77	5	81	49	0	11	39	1.38
30525757--30525808	27	2.0	26	84	3	68	28	17	0	53	1.44
30528230--30528281	21	2.5	21	81	6	61	21	23	17	38	1.93
30536148--30536176	2	14.5	2	100	0	58	48	0	0	51	1.00
30542554--30542601	13	3.4	14	86	11	55	33	0	2	64	1.05
30542568--30542623	23	2.4	23	85	5	69	37	1	0	60	1.07
30544995--30545041	21	2.3	20	75	13	51	38	4	0	57	1.18
30545000--30545042	22	2.0	22	86	9	61	37	4	0	58	1.19
30545608--30545674	26	2.5	26	78	4	71	47	5	0	46	1.27
30545624--30545678	26	2.1	26	86	6	76	52	1	0	45	1.11
30549865--30549914	15	3.3	15	78	10	57	2	18	4	76	1.04
30549886--30549911	9	2.9	9	100	0	52	0	11	7	80	0.89
30554885--30554925	15	2.5	17	80	11	59	63	0	2	34	1.08
30556756--30556790	18	2.0	17	88	5	52	77	2	2	17	1.02
30561391--30561501	57	1.9	57	87	3	161	36	18	8	36	1.80
30562010--30562064	25	2.2	25	83	6	67	41	0	14	43	1.45
30566785--30566834	27	1.9	27	84	8	68	50	4	2	44	1.32
30566957--30567016	15	3.7	15	73	16	57	50	1	3	45	1.28
30568068--30568123	3	18.7	3	100	0	112	33	0	0	66	0.92
30568630--30568667	2	19.0	2	100	0	76	50	0	0	50	1.00
30568843--30568872	15	1.9	16	93	6	53	26	0	3	70	1.03
30569506--30569557	24	2.3	23	77	9	63	50	7	5	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30577600--30577738	31	4.5	31	76	10	126	25	14	10	49	1.74
30577600--30577793	90	2.1	91	82	6	225	24	15	12	47	1.79
30578023--30578128	31	3.6	30	72	14	94	45	9	18	26	1.80
30577959--30578128	58	2.9	59	85	1	225	45	11	18	24	1.82
30578019--30578107	27	3.1	27	65	16	63	50	8	17	22	1.74
30580591--30580636	20	2.3	21	85	14	62	65	2	0	32	1.05
30582198--30582248	19	2.7	19	74	14	61	35	5	3	54	1.43
30583774--30583812	20	2.0	20	85	5	53	43	5	5	46	1.48
30590901--30590959	30	1.9	32	86	6	86	27	1	15	55	1.49
30591459--30591484	13	2.0	13	100	0	52	30	23	0	46	1.53
30596547--30596989	140	3.1	141	94	5	732	35	4	5	53	1.47
30597842--30597873	1	32.0	1	100	0	64	0	0	100	0	0.00
30599596--30599727	58	2.2	60	84	5	171	25	16	11	46	1.81
30599596--30599697	31	3.4	30	68	18	79	25	17	10	46	1.81
30599866--30599978	59	1.9	60	81	5	140	47	12	14	25	1.79
30599874--30600043	91	1.9	91	81	7	213	48	10	13	27	1.75
30601401--30601485	30	2.7	31	83	7	93	43	8	11	36	1.71
30601755--30601797	19	2.1	21	87	8	63	27	6	0	65	1.18
30603306--30603336	12	2.6	12	100	0	62	41	35	16	6	1.74
30607080--30607173	6	15.8	6	75	14	79	47	1	2	48	1.20
30607089--30607149	31	2.0	31	90	6	97	44	1	3	50	1.28
30607070--30607148	11	6.9	11	74	18	56	41	1	3	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30607080--30607173	42	2.3	41	83	5	109	47	1	2	48	1.20
30607422--30607452	15	2.1	15	100	0	62	19	54	12	12	1.70
30607885--30607917	9	3.3	10	87	12	50	48	0	3	48	1.17
30608191--30608228	19	2.0	19	85	10	51	23	15	23	36	1.94
30608717--30609040	161	2.0	162	89	1	499	26	15	13	45	1.83
30609165--30609479	59	5.4	58	87	4	409	32	29	4	33	1.77
30609197--30609474	29	9.5	30	67	18	165	32	28	4	34	1.78
30610763--30610823	31	2.0	31	90	0	95	50	9	3	36	1.52
30617599--30617660	20	3.0	20	75	13	63	54	4	0	40	1.22
30617599--30617636	19	2.0	20	89	5	60	60	5	0	34	1.19
30617654--30617693	11	3.7	11	80	6	55	67	7	0	25	1.16
30617655--30617695	12	3.7	12	78	15	52	68	7	0	24	1.15
30621599--30621671	29	2.5	29	80	8	78	38	4	13	43	1.63
30625387--30625415	3	9.7	3	100	0	58	31	0	0	68	0.89
30629344--30629407	31	2.0	32	85	8	87	39	9	0	51	1.34
30629599--30629638	17	2.4	17	86	0	53	45	0	0	55	0.99
30629601--30629653	15	3.7	15	73	23	51	45	0	0	54	0.99
30636330--30636358	9	3.0	10	90	10	51	62	0	0	37	0.96
30647553--30647603	20	2.8	18	75	13	50	31	3	0	64	1.11
30651874--30652070	75	2.7	71	83	9	229	57	3	5	33	1.39
30668888--30668928	19	2.3	18	91	8	66	48	0	0	51	1.00
30678894--30678919	6	4.3	6	100	0	52	15	50	0	34	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30689399--30689825	212	2.0	212	93	0	721	36	12	12	38	1.81
30693530--30693571	4	10.5	4	100	0	84	50	23	0	26	1.50
30698242--30698280	18	2.1	19	86	13	55	48	0	2	48	1.15
30698242--30698275	17	1.9	18	88	5	52	50	0	2	47	1.16
30698250--30698310	17	3.5	17	75	20	56	49	0	1	49	1.10
30698357--30698386	12	2.5	12	88	0	51	73	0	0	26	0.84
30698473--30698519	15	3.1	15	76	11	51	51	6	0	42	1.27
30698476--30698519	14	2.9	16	80	10	56	52	6	0	40	1.28
30699485--30699516	13	2.5	13	94	0	55	34	3	0	62	1.11
30714190--30714245	27	2.1	27	100	0	112	21	7	25	46	1.76
30714195--30714244	12	3.8	12	78	17	55	22	8	24	46	1.78
30714295--30714336	15	2.8	15	100	0	84	35	14	14	35	1.86
30717066--30717236	58	2.9	58	86	6	229	43	1	1	53	1.18
30717318--30717416	49	2.0	51	86	11	143	36	28	4	31	1.76
30719685--30719728	24	1.9	22	86	9	61	59	9	2	29	1.41
30724204--30724256	21	2.5	21	80	17	65	5	22	0	71	1.06
30726127--30726152	10	2.6	10	100	0	52	76	7	0	15	0.99
30727554--30727665	28	3.8	27	79	15	107	25	7	20	47	1.75
30727554--30727665	60	1.9	58	85	10	156	25	7	20	47	1.75
30731129--30731318	29	6.5	29	70	11	111	35	6	21	35	1.80
30731158--30731465	58	5.2	58	76	9	232	36	3	24	35	1.73
30731300--30731523	30	7.6	29	76	9	179	40	1	23	34	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30731315--30731523	59	3.6	58	78	10	178	39	1	23	35	1.64
30733194--30733257	6	11.2	6	73	9	62	51	0	3	45	1.17
30733173--30733259	34	2.6	34	96	0	147	50	2	4	42	1.35
30733197--30733250	11	4.8	11	77	4	54	51	0	3	44	1.19
30733173--30733268	17	5.7	17	81	1	113	52	2	4	41	1.32
30737470--30737535	23	2.9	23	86	0	87	18	3	33	45	1.65
30738133--30738203	37	1.9	37	91	2	117	47	1	1	49	1.18
30738133--30738228	37	2.6	37	85	6	115	48	2	1	47	1.20
30746203--30746247	2	22.5	2	100	0	90	51	0	0	48	1.00
30748008--30748813	403	2.0	403	96	0	1490	38	19	11	30	1.87
30755230--30755291	31	2.0	31	87	6	90	35	11	11	41	1.77
30768014--30768047	18	1.9	18	88	5	52	29	0	5	64	1.17
30771738--30771782	17	2.6	17	96	0	81	22	8	17	51	1.73
30771787--30771866	35	2.3	35	93	2	135	22	11	31	35	1.89
30775235--30775270	12	3.0	12	87	0	54	58	0	0	41	0.98
30781604--30781630	14	1.9	14	100	0	54	44	14	0	40	1.46
30781891--30781923	6	5.7	6	92	3	50	75	24	0	0	0.80
30782704--30782739	3	12.0	3	100	0	72	33	0	0	66	0.92
30783604--30783641	6	6.3	6	96	0	67	52	28	0	18	1.45
30783599--30783641	18	2.3	18	88	4	68	53	27	0	18	1.45
30788466--30788521	28	2.0	28	93	6	96	53	0	26	19	1.45
30796385--30796426	17	2.4	17	96	4	75	19	0	21	59	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30796833--30796896	21	3.0	22	69	4	58	53	4	0	42	1.22
30797292--30797361	16	4.4	16	83	7	81	41	5	27	25	1.78
30797290--30797361	32	2.3	31	85	9	92	40	6	27	25	1.81
30797539--30797689	58	2.6	59	87	6	218	54	1	0	43	1.13
30800930--30800969	9	4.8	9	79	17	50	65	0	0	35	0.93
30800933--30800966	16	2.2	16	89	5	52	64	0	0	35	0.94
30813783--30813843	29	2.1	29	82	8	72	22	22	26	27	1.99
30817944--30818007	31	2.0	32	85	8	87	40	1	3	54	1.25
30822009--30822037	10	2.7	11	89	10	51	58	0	17	24	1.38
30822479--30822592	23	5.0	23	77	14	119	11	24	24	39	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120