genome.fa.s5.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  41  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11121684--11122774	545	2.0	545	99	0	2173	33	16	25	24	1.96
11128830--11128997	25	6.6	25	77	6	142	23	17	26	31	1.97
11128830--11128969	50	2.8	50	81	5	167	22	16	27	32	1.96
11148031--11148084	23	2.3	23	96	0	99	9	16	29	44	1.79
11148031--11148092	23	2.8	22	90	4	81	9	14	30	45	1.77
11149170--11149221	21	2.5	21	87	6	70	28	13	25	32	1.93
11149529--11149603	23	3.3	23	78	0	78	14	16	28	41	1.87
11152484--11152581	38	2.6	38	76	7	119	30	15	24	29	1.95
11153695--11153760	17	3.9	17	87	0	87	50	10	19	19	1.77
11161520--11161567	14	3.2	16	72	22	50	29	14	14	41	1.85
11161571--11161645	29	2.6	29	87	4	98	37	12	13	37	1.82
11165651--11165677	9	3.0	9	100	0	54	22	0	22	55	1.44
11173648--11173727	22	3.6	22	93	0	133	36	15	13	35	1.86
11179943--11179987	17	2.8	16	81	18	58	0	22	0	77	0.76
11179943--11179988	10	4.3	11	86	8	60	0	21	0	78	0.76
11182920--11182954	14	2.5	14	86	13	54	71	2	17	8	1.23
11192595--11192640	24	1.9	23	86	8	65	56	6	4	32	1.45
11193407--11193464	21	2.8	21	86	0	80	36	27	12	24	1.91
11195534--11195613	22	3.6	22	84	0	115	36	15	13	35	1.86
11207380--11207448	36	2.0	34	83	11	86	71	1	13	14	1.23
11207460--11207491	16	2.0	16	100	0	64	43	18	0	37	1.51
11207463--11207501	16	2.5	15	88	12	53	43	20	2	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11215014--11215337	158	2.1	158	83	1	407	25	20	23	29	1.99
11216147--11216191	24	2.0	22	86	8	63	22	20	8	48	1.76
11221790--11221814	12	2.1	12	100	0	50	52	0	8	40	1.31
11242939--11242985	24	2.0	24	82	0	58	38	0	10	51	1.37
11249994--11250071	29	2.6	30	72	9	79	30	14	12	42	1.83
11251396--11251488	37	2.6	36	84	6	116	39	16	18	25	1.91
11253562--11253629	19	3.6	19	89	0	109	36	27	4	30	1.77
11253569--11253621	11	5.4	11	70	25	55	37	30	5	26	1.79
11256867--11256908	12	3.7	11	82	14	50	0	21	0	78	0.75
11266578--11266620	15	2.9	15	78	0	50	74	0	20	4	1.00
11266586--11266620	10	3.5	10	92	0	52	77	0	17	5	0.96
11269412--11269447	10	3.7	10	92	3	56	25	13	11	50	1.75
11278694--11278727	18	1.9	17	88	5	50	32	17	5	44	1.73
11290646--11290759	54	2.1	54	83	0	147	15	28	29	26	1.96
11293572--11293635	22	3.0	21	77	4	58	35	9	17	37	1.82
11300683--11300827	75	1.9	75	85	2	202	22	23	18	35	1.96
11300683--11300850	75	2.2	75	83	4	196	22	22	20	35	1.96
11305663--11305704	21	2.0	21	95	0	75	35	9	16	38	1.81
11305916--11305958	24	1.9	24	86	13	65	39	11	2	46	1.53
11306212--11306304	27	3.2	29	85	11	120	48	0	1	50	1.07
11306223--11306275	16	3.7	15	74	25	60	49	0	0	50	1.00
11306212--11306311	28	3.5	29	83	12	111	47	0	1	52	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11307144--11307207	29	2.2	30	94	2	112	46	1	0	51	1.10
11310141--11310261	40	3.2	39	68	15	99	23	23	18	34	1.96
11310006--11310262	75	3.5	74	83	5	322	21	24	20	33	1.97
11313512--11313550	11	3.5	11	79	6	51	5	7	23	64	1.40
11313501--11313551	23	2.3	22	90	6	84	3	7	21	66	1.34
11313548--11313593	12	3.8	12	85	0	56	2	4	21	71	1.14
11313546--11313630	23	3.8	22	73	20	70	7	2	20	70	1.22
11313623--11313675	23	2.3	23	83	3	61	15	7	9	67	1.39
11322844--11322903	2	30.5	2	74	3	50	0	0	61	38	0.96
11322847--11322903	6	9.7	6	87	11	82	0	0	63	36	0.95
11325459--11325493	16	2.1	18	89	10	56	42	0	0	57	0.99
11328449--11328502	15	3.6	15	82	0	63	57	5	0	37	1.22
11328664--11328692	10	3.0	10	95	5	51	31	0	41	27	1.56
11331906--11332001	40	2.4	41	79	10	108	33	7	14	44	1.73
11331906--11331992	20	4.3	20	73	14	72	31	8	16	44	1.76
11332464--11332538	37	2.0	37	97	0	141	48	17	8	26	1.75
11350862--11350908	21	2.2	21	88	7	69	25	14	25	34	1.94
11357643--11357681	20	2.0	20	84	0	51	33	15	10	41	1.81
11386394--11386426	13	2.4	14	95	5	59	6	30	3	60	1.36
11398163--11398366	43	4.7	43	88	2	275	38	10	15	35	1.82
11399031--11399069	17	2.3	17	86	0	51	10	5	28	56	1.54
11408421--11408601	81	2.2	81	81	3	213	31	27	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11414122--11414152	15	2.0	16	93	6	55	64	0	35	0	0.94
11418801--11418903	53	1.9	53	98	0	197	32	7	25	34	1.84
11419274--11419377	37	2.8	37	79	1	118	30	30	16	22	1.95
11432825--11433118	36	8.1	36	85	4	360	31	9	22	36	1.86
11432825--11433115	108	2.7	108	88	1	422	31	9	22	36	1.87
11432831--11433155	108	3.0	107	84	3	307	31	9	22	36	1.86
11441103--11441141	13	2.9	14	80	7	53	5	28	0	66	1.12
11441121--11441177	31	1.9	28	86	10	78	5	26	1	66	1.22
11441152--11441200	20	2.4	20	82	3	62	6	22	0	71	1.08
11443220--11443263	21	2.1	21	88	12	65	22	13	4	59	1.53
11447398--11447988	292	2.0	292	94	0	1022	28	16	21	32	1.95
11450103--11450239	66	2.1	66	86	5	188	19	13	27	39	1.89
11450316--11450590	23	12.0	23	91	1	426	32	4	15	47	1.65
11456467--11457282	45	18.2	45	83	5	947	35	6	15	43	1.72
11456797--11456873	36	2.1	36	83	4	102	35	7	14	42	1.74
11456478--11457282	355	2.2	357	84	6	1045	35	6	15	43	1.72
11461804--11462075	145	1.9	145	88	0	418	30	12	23	33	1.92
11471992--11472034	22	2.0	22	85	0	59	41	2	2	53	1.26
11471995--11472062	17	4.2	16	81	11	77	38	1	1	58	1.16
11471995--11472063	11	6.0	11	71	15	50	37	1	1	59	1.15
11471977--11472062	17	5.3	16	74	14	70	37	2	3	56	1.29
11473833--11474147	58	5.4	58	85	5	422	31	31	4	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11473868--11474138	29	9.2	30	66	23	148	30	31	3	34	1.75
11486317--11487163	205	4.2	203	87	3	1084	35	20	22	21	1.96
11486360--11487163	411	2.0	404	85	2	1081	35	20	22	21	1.96
11487512--11487600	17	5.2	17	83	0	106	38	1	4	56	1.27
11487522--11487600	6	13.8	6	74	10	67	39	1	3	55	1.26
11487522--11487600	23	3.5	24	79	10	85	39	1	3	55	1.26
11487543--11487601	28	2.1	28	84	6	75	38	0	5	55	1.22
11487561--11487618	28	2.1	28	83	6	73	41	0	6	51	1.28
11489427--11489520	29	3.2	28	71	20	84	34	30	3	31	1.74
11489397--11489536	59	2.4	59	88	1	199	32	31	3	32	1.75
11492461--11492496	11	3.4	11	88	3	56	72	2	0	25	0.98
11493380--11493615	30	8.0	29	79	6	213	41	23	3	32	1.71
11493370--11493615	59	4.1	59	78	7	219	39	24	3	32	1.73
11493380--11493573	89	2.2	89	83	3	239	43	23	1	31	1.63
11493645--11493677	2	16.5	2	100	0	66	48	0	0	51	1.00
11510998--11511026	14	2.1	14	93	6	51	65	0	20	13	1.26
11514286--11514651	123	3.0	123	92	2	594	35	11	7	44	1.70
11520643--11520667	12	2.1	12	100	0	50	40	16	8	36	1.77
11528089--11528345	123	2.1	124	88	2	385	45	6	10	37	1.63
11528239--11528456	108	2.0	108	86	1	303	45	5	9	39	1.58
11528115--11528563	231	1.9	233	87	1	652	44	6	10	38	1.64
11530312--11530341	10	3.0	10	90	0	51	86	0	3	10	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11531049--11531109	20	2.9	20	75	7	59	52	1	1	44	1.20
11531954--11532000	24	2.0	23	84	12	60	46	8	4	40	1.54
11533280--11533313	16	2.2	16	89	5	52	47	8	2	41	1.50
11533950--11533998	25	2.1	24	85	14	68	40	10	4	44	1.57
11534074--11534203	59	2.2	61	83	5	158	26	10	13	49	1.74
11534408--11534482	31	2.5	31	86	2	107	45	9	14	30	1.77
11539816--11539849	3	11.7	3	93	6	61	32	0	0	67	0.91
11541672--11541757	42	2.0	42	100	0	172	25	18	6	48	1.73
11550900--11550990	42	2.2	42	89	0	137	21	20	28	28	1.99
11550911--11550998	42	2.1	42	91	0	140	22	17	30	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120