genome.fa.s5.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  77  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22485846--22486052	103	2.0	103	99	0	405	35	27	20	17	1.95
22496830--22496886	30	1.9	30	96	0	105	35	10	7	47	1.65
22496829--22496892	30	2.2	30	88	2	103	31	10	6	51	1.62
22498652--22498777	19	6.4	20	71	14	77	56	0	4	38	1.26
22498731--22498768	17	2.3	17	86	4	51	60	2	2	34	1.24
22500321--22500353	17	2.0	17	88	5	50	54	0	3	42	1.15
22500596--22500636	11	3.9	11	75	12	50	39	0	2	58	1.11
22500585--22500637	20	2.6	20	87	3	70	39	1	3	54	1.29
22500681--22500736	19	2.9	19	74	12	60	37	0	1	60	1.07
22500659--22500736	39	2.0	39	82	7	95	37	1	1	60	1.13
22500727--22500769	18	2.4	19	76	11	54	23	4	2	69	1.18
22503546--22503576	2	15.5	2	100	0	62	48	0	0	51	1.00
22504742--22504959	109	2.0	109	96	0	400	36	12	14	35	1.85
22515218--22515261	21	2.1	21	83	4	54	45	4	2	47	1.35
22516506--22516551	22	2.1	22	95	0	83	17	36	17	28	1.92
22518960--22519026	29	2.3	29	81	0	80	49	0	5	44	1.27
22518998--22519041	17	2.6	17	81	0	52	47	2	4	45	1.35
22519076--22519185	30	3.6	30	74	15	100	56	0	9	33	1.37
22528375--22528443	35	2.0	35	91	5	113	36	2	4	56	1.34
22528375--22528440	17	3.8	17	86	4	96	34	1	4	59	1.27
22534018--22534101	22	3.8	22	80	14	93	77	0	22	0	0.77
22534030--22534103	8	9.1	8	75	18	55	78	0	21	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22534034--22534084	14	3.9	14	77	15	63	78	0	21	0	0.75
22534028--22534103	18	4.1	18	77	12	73	77	0	22	0	0.77
22534050--22534103	21	2.6	21	91	2	92	79	0	20	0	0.73
22534997--22535075	7	11.3	7	79	15	76	81	1	17	0	0.77
22534997--22535075	6	12.5	6	81	9	79	81	1	17	0	0.77
22536015--22536813	206	3.9	206	94	0	1350	36	21	21	20	1.96
22537126--22537218	35	2.7	34	88	6	125	38	1	5	54	1.30
22537154--22537218	6	11.0	6	74	14	55	40	1	4	53	1.31
22537126--22537234	52	2.1	52	86	3	148	40	0	4	54	1.27
22537161--22537216	11	4.9	11	80	10	60	37	1	3	57	1.27
22537126--22537234	17	6.3	17	82	7	130	40	0	4	54	1.27
22537126--22537234	35	3.2	33	83	7	121	40	0	4	54	1.27
22543865--22543901	17	2.3	17	86	9	51	35	8	5	51	1.55
22570431--22570477	24	2.0	24	86	0	67	53	4	12	29	1.58
22572410--22572443	17	1.9	18	94	5	61	47	11	0	41	1.40
22573636--22573679	19	2.3	19	96	4	79	52	0	9	38	1.33
22574603--22574700	3	32.0	3	74	10	74	58	1	3	37	1.21
22575795--22575873	30	2.6	30	80	7	88	37	25	3	32	1.74
22575855--22576118	29	9.1	29	69	18	104	29	24	5	40	1.78
22575889--22576077	29	6.6	28	70	17	120	29	25	4	40	1.76
22575805--22576118	115	2.7	117	80	6	325	29	25	5	39	1.78
22575883--22576118	58	4.1	57	83	4	285	28	25	5	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22576034--22576138	28	3.7	27	75	18	81	29	24	7	38	1.83
22575922--22576138	29	7.6	27	70	15	109	29	26	6	37	1.81
22581491--22581521	7	4.4	7	100	0	62	29	0	58	12	1.35
22582613--22582645	15	2.2	15	94	0	57	48	0	21	30	1.50
22586269--22586455	52	3.6	52	83	2	234	25	16	23	34	1.95
22588406--22588452	22	2.2	21	88	3	67	74	2	6	17	1.12
22589267--22589309	19	2.3	19	84	8	52	58	4	0	37	1.19
22589907--22590098	104	1.8	103	81	6	235	27	24	11	35	1.91
22590744--22590798	4	13.5	4	77	11	58	78	0	3	18	0.90
22594825--22594864	21	1.9	21	89	0	62	30	17	10	42	1.82
22594832--22594875	21	2.1	21	82	0	52	31	15	11	40	1.83
22596413--22596473	22	2.8	22	85	7	72	72	3	11	13	1.24
22596439--22596468	15	1.9	16	93	6	53	70	3	13	13	1.30
22596486--22596520	14	2.5	14	100	0	70	68	5	5	20	1.31
22597272--22597314	19	2.3	19	84	8	52	58	4	0	37	1.19
22598927--22598990	2	32.0	2	100	0	128	50	0	0	50	1.00
22602036--22602090	14	4.0	14	79	13	69	36	38	7	18	1.78
22602009--22602092	27	3.1	27	83	6	107	38	33	5	22	1.79
22604717--22604804	27	3.4	25	76	17	90	65	1	0	32	1.00
22604716--22604798	28	3.1	27	72	18	82	63	1	0	34	1.02
22604741--22604781	17	2.4	17	88	8	57	60	0	0	39	0.96
22605048--22605081	5	6.8	5	100	0	68	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22605191--22605259	31	2.3	30	78	9	77	43	7	8	40	1.63
22605208--22605276	31	2.2	31	89	0	102	37	7	8	46	1.63
22609517--22609578	30	2.1	30	96	0	115	25	14	17	41	1.88
22617245--22617363	60	2.0	60	100	0	238	35	7	18	38	1.79
22617863--22617898	13	2.6	14	86	13	56	8	13	0	77	0.98
22620720--22621010	158	1.8	158	88	1	440	31	23	21	23	1.99
22639415--22639461	22	2.1	22	100	0	94	48	0	8	42	1.33
22640769--22640818	21	2.4	21	86	0	64	26	14	28	32	1.94
22645180--22645238	29	2.0	30	86	3	84	49	15	6	28	1.70
22647131--22647175	19	2.2	20	84	7	56	73	2	0	24	0.95
22650881--22650934	22	2.4	23	84	3	65	50	0	0	50	1.00
22650873--22650924	23	2.3	24	80	12	65	53	0	0	46	1.00
22650875--22651028	81	1.9	79	86	2	218	44	1	9	45	1.43
22650953--22651004	23	2.3	23	75	18	56	46	0	9	44	1.36
22651705--22651772	30	2.2	31	82	7	77	47	20	8	23	1.78
22651697--22652031	174	1.9	174	85	0	463	35	20	16	26	1.94
22672428--22672489	31	2.0	31	100	0	124	12	45	0	41	1.42
22675830--22675871	21	2.0	20	86	4	57	2	21	23	52	1.59
22681539--22681569	14	2.1	15	94	5	55	77	3	6	12	1.08
22684372--22684409	18	2.1	19	85	5	51	0	36	7	55	1.29
22686511--22686540	16	1.9	16	93	6	53	60	10	16	13	1.59
22686535--22686564	16	1.9	16	93	6	53	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22686535--22686564	11	2.8	11	95	5	53	80	0	0	20	0.72
22686535--22686564	5	5.8	5	92	7	51	80	0	0	20	0.72
22694677--22694723	23	2.0	23	91	0	76	46	14	21	17	1.83
22701268--22701320	27	2.0	25	82	13	63	9	35	5	49	1.59
22718229--22718405	88	2.0	88	100	0	354	28	4	25	41	1.75
22718842--22718908	23	3.0	22	81	10	75	68	7	19	4	1.31
22719034--22719082	24	2.0	24	88	7	73	44	2	42	10	1.49
22725084--22725140	26	2.2	26	81	3	71	33	19	21	26	1.97
22734226--22734267	21	2.0	22	85	4	59	64	2	19	14	1.39
22753516--22753558	21	2.0	21	95	0	77	25	32	23	18	1.97
22766028--22766183	3	53.7	3	70	18	64	68	4	5	21	1.29
22766145--22766183	17	2.3	17	86	8	53	69	2	2	25	1.14
22772612--22772688	6	12.0	6	72	21	50	18	6	0	75	1.01
22772621--22772652	14	2.2	15	94	5	57	12	6	0	81	0.87
22772594--22772688	46	2.1	47	82	6	122	23	7	0	69	1.13
22772617--22772697	40	2.0	41	92	2	137	19	9	0	70	1.15
22777871--22777943	29	2.4	29	80	11	76	31	16	17	34	1.93
22785022--22785067	23	2.0	23	83	8	58	10	19	2	67	1.31
22785022--22785067	21	2.0	23	84	12	60	10	19	2	67	1.31
22789608--22789664	29	2.0	29	92	0	96	50	14	15	19	1.77
22789598--22789680	25	3.2	25	77	12	85	48	13	15	22	1.80
22790607--22790896	89	3.2	89	80	3	314	42	2	19	35	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22790603--22790887	30	9.6	29	79	7	216	41	2	19	35	1.66
22790603--22790896	59	4.9	59	71	9	179	41	2	19	35	1.66
22792358--22792383	11	2.4	11	100	0	52	11	0	23	65	1.25
22792975--22793555	39	14.9	38	71	5	311	25	20	30	23	1.99
22792923--22793323	194	2.1	195	81	4	470	24	20	31	23	1.98
22793061--22793554	78	6.4	77	82	4	517	25	20	30	23	1.99
22805251--22805472	30	7.5	30	77	9	208	39	2	22	36	1.66
22831106--22831149	22	2.0	23	86	4	63	43	9	15	31	1.79
22843750--22843845	31	3.2	29	63	11	75	36	1	21	40	1.61
22843730--22843856	62	2.0	62	100	0	254	37	1	21	39	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120