genome.fa.s5.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  6  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1532837--1532886	14	3.5	15	82	15	61	46	0	2	52	1.12
1533557--1533591	18	1.9	18	88	0	52	40	0	5	54	1.24
1536041--1536078	20	1.9	19	89	5	58	47	0	0	52	1.00
1536056--1536122	35	1.9	35	84	0	89	46	2	7	43	1.47
1540053--1540090	18	2.1	19	85	5	51	65	0	2	31	1.06
1549351--1549394	20	2.1	20	83	8	52	45	2	9	43	1.48
1554498--1554542	21	2.1	22	83	4	56	66	15	2	15	1.35
1555565--1555599	18	1.9	18	94	0	61	37	42	14	5	1.69
1559312--1559357	20	2.3	20	96	0	83	17	13	15	54	1.71
1559291--1559385	49	1.9	49	97	0	181	21	12	15	50	1.77
1561140--1561187	20	2.3	20	89	10	71	68	0	29	2	1.01
1562942--1562990	4	12.2	4	100	0	98	24	0	24	51	1.49
1564620--1564652	4	8.2	4	100	0	66	51	24	0	24	1.48
1564642--1564676	18	1.9	18	88	0	52	48	14	2	34	1.58
1571910--1571949	21	1.9	21	84	0	53	45	2	0	52	1.14
1578298--1578379	9	9.1	9	70	26	50	39	2	3	54	1.31
1579681--1579747	31	2.3	29	80	12	75	40	13	11	34	1.81
1582049--1582078	14	2.1	14	93	0	51	83	0	0	16	0.65
1598474--1598506	15	2.2	15	89	10	50	75	6	0	18	1.00
1599042--1599072	16	1.9	16	93	0	53	48	6	6	38	1.55
1612346--1612396	26	2.0	26	92	0	84	37	35	3	23	1.74
1634843--1635018	60	2.9	60	79	3	219	22	17	13	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1639334--1639393	29	2.1	29	84	9	79	60	3	1	35	1.23
1639564--1639588	12	2.1	12	100	0	50	16	24	8	52	1.70
1649892--1649959	21	3.1	21	77	8	66	11	23	10	54	1.67
1650371--1650426	28	2.0	28	82	6	69	37	3	16	42	1.65
1652420--1652448	6	4.8	6	100	0	58	31	0	17	51	1.45
1652919--1652952	17	2.0	17	94	0	59	20	5	5	67	1.33
1659319--1659365	18	2.5	19	82	6	60	31	19	6	42	1.76
1663991--1664048	24	2.4	25	83	16	79	29	1	1	67	1.11
1666247--1666283	17	2.2	17	90	0	56	45	2	2	48	1.30
1666352--1666412	28	2.1	29	81	3	70	32	0	3	63	1.10
1667947--1667990	16	2.5	19	78	17	58	31	4	0	63	1.14
1668359--1668411	3	17.3	3	88	3	79	32	0	1	66	1.03
1671837--1671887	6	8.3	6	79	12	59	45	3	0	50	1.20
1672566--1672619	21	2.6	22	88	8	78	46	1	3	48	1.30
1673854--1673967	29	3.9	29	73	20	94	30	32	5	31	1.80
1681367--1681426	6	10.0	6	96	0	111	15	66	16	1	1.33
1683616--1683655	18	2.2	18	100	0	80	62	5	12	20	1.48
1690033--1690170	24	5.8	24	87	1	179	23	24	23	28	2.00
1690168--1690277	27	4.1	27	84	0	130	36	24	11	27	1.90
1698483--1698530	23	2.3	20	78	21	62	31	16	6	45	1.72
1698489--1698533	23	2.0	23	100	0	90	31	13	6	48	1.68
1698547--1698607	14	4.6	14	71	24	60	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1699860--1699884	13	1.9	13	100	0	50	28	8	8	56	1.57
1700332--1700433	21	4.7	22	76	12	88	40	0	0	58	1.04
1700348--1700411	9	6.8	9	76	16	51	39	1	0	59	1.07
1700340--1700402	20	3.2	20	84	8	85	36	1	0	61	1.05
1700335--1700415	21	3.8	20	79	12	90	38	1	0	60	1.05
1700331--1700433	30	3.4	31	74	18	101	39	0	0	59	1.04
1700438--1700475	15	2.5	15	95	0	67	73	5	0	21	1.02
1700588--1700626	21	1.9	21	94	5	71	30	25	10	33	1.89
1704570--1704620	13	3.8	13	84	2	66	11	23	25	39	1.89
1705494--1705629	66	2.1	66	100	0	272	25	11	20	43	1.84
1706403--1706463	31	2.0	31	87	6	88	42	4	6	45	1.51
1707760--1707810	27	1.9	26	84	4	66	33	1	1	62	1.17
1731715--1732141	49	8.7	48	69	13	228	38	18	25	17	1.93
1731715--1732151	98	4.5	98	87	0	595	38	18	25	17	1.93
1732626--1732654	12	2.3	13	94	5	51	82	0	0	17	0.66
1732999--1733044	24	2.0	23	87	12	67	56	19	23	0	1.42
1745208--1745257	18	2.8	18	80	11	50	44	6	2	48	1.39
1746765--1746882	30	4.0	30	80	11	127	37	21	1	39	1.63
1746766--1747090	30	11.0	29	69	10	126	34	24	3	38	1.71
1746776--1747090	59	5.3	59	76	8	252	33	24	2	39	1.70
1757931--1757960	5	6.0	5	100	0	60	0	0	60	40	0.97
1762607--1762743	72	1.9	69	85	10	188	45	11	13	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1767672--1767741	11	6.1	11	81	8	77	70	25	1	2	1.10
1767672--1767741	34	2.0	35	91	2	115	70	25	1	2	1.10
1768488--1768536	22	2.2	23	88	3	73	65	20	8	6	1.41
1768974--1769193	43	5.1	42	90	3	318	20	30	21	28	1.98
1769479--1769552	21	3.5	21	94	0	112	0	44	21	33	1.53
1769493--1769551	11	5.5	11	72	22	54	0	44	23	32	1.54
1769547--1769695	66	2.3	66	92	0	253	16	24	16	42	1.88
1771015--1771108	8	11.8	8	72	21	65	52	3	1	43	1.24
1771015--1771094	30	2.6	29	83	13	99	52	3	1	42	1.27
1771013--1771059	22	2.2	20	85	7	67	55	0	0	44	0.99
1771159--1771284	18	7.7	17	67	20	81	46	4	0	49	1.23
1771158--1771307	48	3.1	49	90	6	225	46	5	0	48	1.25
1771357--1771403	18	2.6	18	79	0	67	48	0	2	48	1.13
1771358--1771416	26	2.2	27	80	11	68	45	1	1	50	1.21
1771654--1771683	14	2.1	14	100	0	60	36	23	0	40	1.55
1772444--1772481	12	3.2	12	100	0	76	60	0	23	15	1.35
1773557--1773816	41	6.3	41	81	4	290	25	24	26	23	2.00
1773557--1773879	82	3.9	82	81	7	327	24	24	25	25	2.00
1773557--1773879	124	2.6	122	81	5	330	24	24	25	25	2.00
1774611--1774662	19	2.8	19	88	2	70	48	7	0	44	1.31
1774665--1774734	30	2.4	30	79	11	74	57	1	4	37	1.27
1786010--1786113	37	2.8	37	98	0	199	25	7	27	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1791208--1791237	12	2.6	12	94	5	53	60	6	0	33	1.23
1791311--1791362	17	3.1	17	71	0	59	50	0	0	50	1.00
1791312--1791380	35	2.0	35	91	2	113	47	0	0	52	1.00
1794616--1794690	28	2.7	26	76	17	71	34	1	25	38	1.64
1794620--1794779	87	1.8	88	85	6	227	33	1	26	39	1.64
1794570--1794789	58	3.8	57	78	9	191	32	1	26	39	1.67
1794571--1794788	29	7.5	29	72	13	146	32	1	26	39	1.67
1796149--1796183	17	2.1	17	88	0	52	51	0	2	45	1.16
1796158--1796224	34	2.0	34	85	5	91	53	8	4	32	1.52
1796149--1796218	17	4.1	16	67	10	50	51	5	4	38	1.45
1805854--1805899	18	2.6	17	86	10	65	0	15	2	82	0.76
1807257--1807291	17	2.1	17	88	0	52	51	2	0	45	1.16
1807274--1807325	26	2.0	26	84	3	68	51	1	3	42	1.31
1816814--1816864	23	2.2	24	89	3	77	27	23	17	31	1.97
1816867--1816922	23	2.4	23	90	0	85	32	14	23	30	1.94
1827827--1827890	24	2.7	24	78	9	76	26	23	23	26	2.00
1837396--1837457	28	2.2	28	80	11	74	27	11	27	33	1.91
1837443--1837807	59	6.2	58	81	9	361	35	2	28	32	1.71
1837532--1837847	29	10.8	29	71	18	183	33	2	29	33	1.72
1837468--1837807	177	1.9	177	88	2	513	35	2	29	32	1.72
1837443--1837807	118	3.1	117	84	5	461	35	2	28	32	1.71
1837530--1837847	59	5.4	56	81	10	282	33	2	29	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1839821--1839904	17	4.8	17	76	4	87	52	5	2	39	1.39
1840551--1840719	91	1.9	91	89	2	268	31	19	15	33	1.93
1840647--1841718	76	14.1	76	95	1	1788	32	17	15	34	1.91
1842107--1842233	51	2.5	51	87	1	175	11	24	24	40	1.87
1842063--1842480	101	4.2	98	80	6	385	14	24	22	38	1.91
1842273--1842437	51	3.3	51	73	11	158	13	25	19	41	1.88
1842063--1842480	50	8.3	50	70	6	177	14	24	22	38	1.91
1854432--1854826	59	6.8	59	80	9	467	35	2	27	34	1.71
1854473--1854567	30	3.2	30	65	19	72	32	5	27	34	1.79
1854531--1854628	51	1.9	51	93	0	169	34	5	23	36	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120