genome.fa.s5.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  39  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10284125--10284159	17	2.0	18	88	5	54	31	8	11	48	1.69
10289028--10289062	18	1.9	18	94	0	61	20	8	22	48	1.76
10293860--10293920	32	1.9	32	89	0	95	36	14	16	32	1.89
10297476--10297510	18	1.9	18	88	0	52	48	20	8	22	1.76
10298750--10298906	79	2.0	78	93	1	269	35	21	21	22	1.96
10304090--10304128	19	2.1	19	90	0	60	76	0	5	17	0.96
10314382--10314418	19	1.9	19	88	0	56	54	5	0	40	1.24
10318023--10318169	43	3.4	43	84	2	188	40	8	22	28	1.84
10325373--10325438	25	2.8	24	86	6	89	48	19	19	12	1.80
10325347--10325446	23	4.3	23	81	8	123	46	20	24	10	1.81
10330970--10331044	23	3.3	23	92	1	125	42	21	29	6	1.78
10345524--10345675	43	3.5	43	80	4	173	38	11	21	28	1.88
10376757--10376788	12	2.7	12	100	0	64	65	0	34	0	0.93
10384395--10384442	18	2.8	17	81	9	53	12	14	12	60	1.59
10386617--10386671	24	2.2	24	90	3	83	27	16	10	45	1.80
10389350--10389497	23	6.4	23	86	0	197	35	5	12	46	1.64
10391959--10392210	42	6.0	42	84	5	183	28	27	9	33	1.89
10392023--10392238	42	5.1	42	89	0	297	29	28	9	32	1.89
10397132--10397652	42	12.4	42	92	2	832	27	28	11	32	1.91
10400624--10400675	18	2.9	18	76	0	59	42	26	13	17	1.86
10421672--10421744	21	3.5	20	79	7	67	34	27	10	27	1.90
10422275--10422409	52	2.6	52	89	0	207	37	25	12	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10434972--10435025	21	2.6	21	85	5	65	29	11	27	31	1.91
10465632--10465807	42	4.2	42	93	0	289	27	26	9	36	1.87
10469540--10469613	21	3.5	21	69	10	53	31	21	13	33	1.92
10470277--10470462	42	4.4	42	90	0	291	26	26	8	38	1.84
10475468--10475691	51	4.4	52	70	13	146	44	8	2	44	1.49
10475555--10475808	137	1.8	137	84	7	343	44	10	2	42	1.53
10476220--10476291	3	24.0	3	80	5	65	58	0	9	31	1.31
10476664--10477230	42	13.5	42	86	1	751	35	24	18	21	1.95
10477633--10477683	17	3.0	16	80	13	50	5	11	1	80	0.97
10493359--10493414	21	2.7	21	83	8	78	30	26	10	32	1.90
10494124--10494294	52	3.3	52	85	2	218	39	21	11	28	1.87
10513508--10513609	22	4.6	22	82	4	125	38	15	12	33	1.86
10518467--10518499	16	2.0	17	88	5	50	33	12	3	51	1.54
10519554--10519599	15	2.9	15	81	18	58	0	34	0	65	0.93
10519546--10519607	17	3.3	19	72	25	51	0	35	0	64	0.94
10525523--10525559	18	2.1	18	94	0	65	21	10	24	43	1.84
10529704--10530548	422	2.0	421	86	3	1182	24	24	15	35	1.94
10543754--10544056	150	2.0	151	98	0	590	30	28	19	22	1.98
10545798--10545878	22	3.7	21	74	12	83	39	16	11	33	1.83
10547635--10547673	18	2.1	19	85	9	53	43	15	0	41	1.46
10555191--10555221	6	5.2	6	100	0	62	83	0	0	16	0.64
10555584--10555613	6	5.0	6	100	0	60	33	33	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10568112--10568151	20	2.0	20	85	9	55	40	0	15	45	1.46
10569805--10569833	3	9.7	3	100	0	58	34	65	0	0	0.93
10570800--10570877	30	2.6	30	81	2	86	35	21	6	35	1.79
10570828--10570920	30	3.1	30	78	3	107	38	19	4	37	1.71
10570825--10570966	60	2.4	60	80	4	153	38	20	4	36	1.74
10589344--10589525	101	1.8	101	82	0	238	34	19	20	25	1.96
10589871--10589896	4	6.5	4	100	0	52	23	0	0	76	0.78
10591155--10591334	29	6.2	29	75	8	134	37	21	3	37	1.70
10591155--10591424	30	9.2	30	80	7	205	35	21	4	37	1.75
10591155--10591394	59	4.1	60	81	6	246	36	21	4	37	1.74
10608449--10608480	2	16.0	2	100	0	64	50	0	0	50	1.00
10615827--10615851	10	2.5	10	100	0	50	20	0	0	80	0.72
10615850--10615874	10	2.5	10	100	0	50	72	0	0	28	0.86
10617217--10617444	30	7.7	29	74	10	140	39	19	4	35	1.73
10617217--10617439	60	3.7	60	84	4	256	39	19	4	36	1.72
10617217--10617439	61	3.7	60	82	4	238	39	19	4	36	1.72
10628995--10629123	39	3.3	39	77	8	154	30	27	17	24	1.97
10631225--10631582	30	12.1	30	77	11	276	35	26	3	34	1.74
10631234--10631605	58	6.3	59	80	5	284	36	25	3	35	1.73
10631386--10631634	29	8.6	29	76	11	163	37	26	2	32	1.71
10631395--10631634	58	4.1	58	82	5	236	35	27	2	33	1.72
10631355--10631654	29	10.3	30	71	15	89	36	27	4	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10632987--10633013	14	1.9	14	100	0	54	74	3	0	22	0.98
10633558--10633600	16	2.7	16	81	0	59	30	4	0	65	1.13
10633560--10633615	21	2.6	21	81	15	62	28	3	0	67	1.07
10634377--10634558	30	6.1	29	72	7	123	36	21	5	36	1.77
10634371--10634515	60	2.4	60	75	7	150	37	22	4	35	1.73
10634377--10634556	90	2.0	91	82	5	222	37	20	5	36	1.76
10635449--10635643	19	10.3	19	82	2	221	32	20	25	22	1.98
10643229--10643362	36	3.7	36	91	0	214	33	17	24	24	1.96
10648685--10648858	87	2.0	87	91	0	285	29	10	27	31	1.91
10650626--10650711	34	2.5	34	90	3	136	27	19	24	27	1.99
10654113--10654362	53	4.7	53	87	0	349	28	16	22	33	1.95
10662768--10663016	53	4.7	53	85	0	338	26	16	22	34	1.95
10664271--10664362	46	2.0	46	100	0	184	45	13	8	32	1.73
10665458--10665487	15	2.0	15	93	0	51	76	6	16	0	0.99
10666634--10666687	23	2.3	23	81	6	65	31	12	20	35	1.90
10666815--10666871	19	2.8	20	75	17	55	52	1	0	45	1.11
10666831--10666897	34	2.0	34	82	5	82	52	2	1	43	1.25
10668172--10668221	16	3.2	16	75	10	50	54	0	0	46	1.00
10669438--10669520	21	3.4	26	63	27	65	53	0	14	32	1.42
10669442--10669514	23	3.3	23	70	14	80	52	0	15	32	1.43
10669444--10669538	44	2.2	44	94	3	165	52	0	14	32	1.42
10669452--10669525	23	3.3	22	73	7	78	51	0	14	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10669463--10669542	22	3.6	22	71	6	72	55	0	13	31	1.39
10676699--10676756	30	1.9	31	89	3	91	46	1	5	46	1.35
10680847--10680880	10	3.3	10	87	4	50	20	0	5	73	1.04
10681222--10681262	13	2.9	15	79	20	52	58	0	0	41	0.98
10681295--10681346	15	3.2	15	73	19	50	53	0	0	46	1.00
10681297--10681333	19	1.9	19	88	0	56	48	0	0	51	1.00
10684822--10684856	17	2.0	18	88	5	54	0	37	0	62	0.95
10684886--10684922	14	2.4	16	82	13	51	2	16	2	78	0.98
10684950--10684984	14	2.5	14	85	0	52	62	2	0	34	1.10
10684963--10685018	13	4.5	12	76	14	51	51	1	0	46	1.11
10686218--10686251	16	2.1	17	88	5	52	8	2	11	76	1.12
10688541--10688743	51	4.0	51	83	3	248	25	19	27	28	1.98
10688545--10688743	25	7.8	25	69	15	104	24	19	27	28	1.99
10688581--10688718	26	5.4	26	71	16	99	25	19	28	26	1.99
10688541--10688743	102	2.0	102	88	1	300	25	19	27	28	1.98
10699542--10699584	5	8.6	5	100	0	86	79	0	0	20	0.74
10701680--10701706	14	1.9	14	100	0	54	85	0	14	0	0.61
10713373--10713597	122	1.8	122	84	1	308	22	22	15	39	1.91
10713488--10713671	75	2.4	74	86	3	242	23	21	15	39	1.91
10713627--10713719	48	1.9	48	86	0	132	21	21	15	41	1.89
10723366--10723398	5	6.6	5	86	13	50	78	0	0	21	0.75
10727762--10727824	33	1.9	33	100	0	126	26	9	17	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10730513--10730555	18	2.4	18	80	3	52	53	13	11	20	1.71
10732770--10732814	15	3.0	14	81	15	54	73	0	13	13	1.10
10736901--10736940	17	2.4	17	87	8	55	17	12	15	55	1.70
10752643--10752681	21	1.9	21	89	5	62	12	12	7	66	1.43
10759366--10759404	13	2.8	13	88	7	51	48	10	2	38	1.51
10761572--10761607	18	2.0	18	94	0	63	19	33	22	25	1.97
10767464--10767488	13	1.9	13	100	0	50	56	8	0	36	1.29
10770409--10770446	17	2.2	17	90	0	58	28	2	2	65	1.19
10772941--10772971	14	2.3	13	94	5	53	0	6	3	90	0.55
10775547--10775610	31	2.1	31	85	5	85	12	17	12	57	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120