genome.fa.s5.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  69  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20384496--20384610	58	2.0	58	91	3	187	33	0	20	44	1.58
20384749--20384786	9	4.2	9	89	0	58	31	10	10	47	1.72
20386358--20386409	27	1.9	27	96	0	95	25	13	21	40	1.89
20386662--20387941	200	6.4	200	91	0	2060	20	22	21	36	1.96
20386662--20390494	600	6.3	600	71	15	2157	20	22	20	35	1.96
20387809--20388055	114	2.2	114	93	0	422	20	20	22	36	1.95
20387605--20388255	314	2.1	314	92	0	1068	20	21	21	36	1.95
20387919--20388942	200	5.1	200	92	0	1658	20	22	20	35	1.96
20387405--20388455	514	2.0	514	91	0	1672	20	21	21	36	1.95
20387205--20389406	714	3.0	713	84	4	2602	20	22	20	35	1.96
20387919--20388942	399	2.6	400	92	0	1683	20	22	20	35	1.96
20388765--20389094	152	2.2	152	90	1	527	21	21	22	34	1.97
20388927--20390494	200	7.8	200	91	0	2413	21	22	20	35	1.96
20390318--20390646	152	2.2	152	93	1	552	19	22	22	35	1.96
20389927--20391046	552	2.0	552	91	0	1828	20	22	20	36	1.96
20390118--20390846	352	2.1	352	92	0	1208	20	22	21	36	1.95
20390470--20391846	200	6.9	200	92	0	2177	20	22	20	36	1.96
20389718--20391246	752	2.0	752	92	0	2515	21	22	20	35	1.96
20389518--20391446	952	2.0	952	91	0	3092	21	22	20	35	1.96
20391670--20391998	152	2.2	152	92	1	543	19	22	22	36	1.95
20391279--20392398	552	2.0	552	91	0	1790	20	22	21	35	1.96
20391470--20392198	352	2.1	352	92	0	1199	20	22	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20391822--20392929	200	5.5	200	87	0	1574	21	21	20	37	1.95
20391079--20392598	752	2.0	752	91	0	2430	21	21	20	36	1.96
20390870--20392795	952	2.0	952	90	0	3028	21	21	20	36	1.95
20401825--20401987	58	2.8	58	79	13	169	37	3	26	32	1.72
20401882--20401977	30	3.3	29	69	16	81	36	3	27	33	1.73
20401879--20402013	58	2.3	59	82	2	157	34	4	28	32	1.77
20401980--20402047	30	2.3	30	86	0	100	41	7	20	30	1.80
20401980--20402073	30	3.2	29	80	7	91	38	8	20	32	1.83
20403945--20403989	17	2.6	17	89	0	63	40	0	2	57	1.11
20403941--20403989	23	2.2	22	88	3	71	38	0	2	59	1.09
20413109--20413165	24	2.4	23	88	8	87	40	0	0	59	0.97
20413183--20413223	18	2.4	16	80	11	55	39	2	0	58	1.11
20422477--20422553	36	2.1	36	85	0	100	36	28	7	27	1.85
20422639--20422747	23	4.7	23	84	0	155	47	11	4	36	1.59
20425466--20425835	79	4.7	79	86	3	487	22	18	27	31	1.97
20425466--20425840	156	2.4	156	86	4	506	22	18	27	31	1.97
20427857--20427886	11	2.7	11	94	0	51	60	6	6	26	1.47
20431287--20431393	20	5.2	20	73	7	74	34	6	10	48	1.63
20431410--20431460	26	2.0	26	100	0	102	45	0	7	47	1.32
20433206--20433312	53	2.0	53	98	0	205	56	12	15	15	1.68
20433320--20433496	88	2.0	88	100	0	354	24	18	24	32	1.97
20434630--20434693	31	2.0	32	82	8	78	32	10	10	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20434641--20434701	32	1.9	31	83	3	77	32	8	9	49	1.66
20435368--20435694	98	3.3	99	90	3	498	29	18	11	39	1.86
20450053--20450177	30	4.2	29	75	14	121	39	20	4	36	1.73
20450223--20450413	28	6.4	28	71	19	104	25	2	10	61	1.42
20450277--20450336	18	3.5	17	71	13	52	25	0	8	66	1.19
20450221--20450337	27	4.3	26	72	20	89	25	0	10	63	1.32
20450322--20450464	35	4.4	35	66	22	94	25	5	10	58	1.53
20450364--20450438	27	2.8	27	78	11	75	24	1	10	64	1.33
20450261--20450549	95	3.1	95	97	0	544	25	4	10	59	1.50
20464594--20464634	6	6.0	7	83	11	50	78	0	21	0	0.76
20464594--20464633	20	2.0	19	90	9	62	80	0	20	0	0.72
20464602--20464631	6	4.8	6	95	4	51	83	0	16	0	0.65
20464592--20464625	14	2.4	14	85	0	50	79	0	20	0	0.73
20465516--20465727	49	4.3	49	75	1	192	34	15	29	21	1.93
20465516--20465746	98	2.4	98	82	2	268	33	15	29	21	1.94
20466031--20466238	40	5.2	40	75	8	174	33	21	17	27	1.96
20466027--20466222	79	2.5	80	76	9	202	33	21	17	27	1.96
20466238--20466657	40	10.6	40	72	6	266	32	25	16	24	1.96
20466139--20466322	100	1.8	99	85	5	255	34	20	17	28	1.95
20466238--20466657	79	5.3	79	85	0	536	32	25	16	24	1.96
20469044--20469260	30	7.3	30	85	2	258	38	20	3	37	1.71
20469044--20469262	90	2.4	89	87	3	305	38	20	3	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20469302--20469360	24	2.3	26	80	13	70	25	0	8	66	1.20
20473335--20473377	14	3.1	14	79	0	50	23	25	20	30	1.99
20473338--20473377	21	1.9	21	94	0	71	22	22	22	32	1.98
20475524--20475577	24	2.2	24	96	0	99	40	1	33	24	1.66
20480286--20480343	17	3.6	17	77	6	50	20	34	18	25	1.96
20486811--20486848	19	2.0	19	94	0	67	44	21	7	26	1.79
20488521--20488599	16	4.9	16	73	10	63	22	21	0	55	1.43
20488551--20488611	16	3.9	15	81	10	77	19	24	0	55	1.43
20488517--20488612	32	3.0	32	89	4	131	20	21	0	57	1.41
20490008--20490117	52	2.2	49	80	9	123	54	4	3	37	1.38
20490034--20490199	50	3.2	50	79	10	158	50	7	3	39	1.48
20491603--20491766	41	4.0	41	83	2	186	34	18	28	18	1.95
20491603--20491781	82	2.2	82	81	2	207	34	18	29	18	1.95
20493469--20493512	22	2.0	22	86	4	61	13	11	11	63	1.52
20495809--20496120	43	7.3	43	86	1	378	25	19	25	29	1.99
20498816--20498919	48	2.2	48	87	1	147	28	16	25	29	1.97
20498841--20498954	48	2.4	48	83	5	133	30	11	25	32	1.91
20500570--20500612	18	2.4	19	80	11	54	55	0	0	44	0.99
20501530--20501560	15	2.0	16	93	6	55	51	22	6	19	1.69
20502296--20502908	306	2.0	306	100	0	1226	38	16	22	22	1.93
20503518--20503594	29	2.6	30	82	15	106	38	18	1	41	1.58
20503551--20503774	59	3.8	60	77	9	221	35	22	6	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20503605--20503817	29	7.2	29	67	14	114	36	25	6	32	1.81
20503581--20503817	118	2.0	118	85	1	323	35	24	6	32	1.81
20503581--20503817	59	4.0	59	80	4	246	35	24	6	32	1.81
20507535--20507574	15	2.6	16	85	14	50	80	0	17	2	0.83
20508413--20508501	16	5.7	15	78	11	90	82	1	15	1	0.80
20508413--20508501	7	12.6	7	83	9	110	82	1	15	1	0.80
20508411--20508496	26	3.2	26	86	8	111	82	1	15	1	0.79
20508398--20508501	35	3.0	33	87	7	136	81	0	14	2	0.85
20509455--20511569	49	43.2	49	71	8	1442	38	19	24	17	1.92
20509453--20511570	98	21.6	98	90	0	3304	38	19	24	17	1.92
20509453--20511863	196	12.2	196	89	2	3604	38	19	24	17	1.92
20511552--20511589	19	2.0	19	100	0	76	52	10	36	0	1.36
20511458--20511687	117	2.0	117	93	0	397	40	19	26	14	1.90
20511356--20511785	215	2.0	215	92	0	707	40	19	25	15	1.90
20511571--20511863	98	3.0	99	92	2	484	38	19	24	17	1.92
20511583--20511849	49	5.4	50	73	13	232	38	20	24	16	1.93
20512085--20512352	39	6.9	39	75	1	250	23	30	20	25	1.99
20512074--20512352	78	3.6	78	87	0	398	24	30	20	24	1.99
20514775--20514863	30	3.0	31	78	6	103	38	24	2	34	1.68
20514851--20515064	30	7.2	29	73	16	111	35	26	4	33	1.77
20514835--20515093	59	4.4	59	80	4	256	35	25	5	32	1.79
20514771--20515060	118	2.5	117	78	7	297	36	25	3	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20514864--20515146	29	9.7	29	72	16	149	35	25	5	33	1.80
20514864--20515132	59	4.6	59	77	8	163	36	25	5	32	1.80
20518441--20518466	6	4.3	6	100	0	52	0	0	15	84	0.62
20535312--20535336	10	2.5	10	100	0	50	36	0	0	64	0.94
20540589--20540618	5	5.8	5	92	7	51	83	0	16	0	0.65
20541061--20541117	27	2.1	27	83	6	71	31	1	1	64	1.13
20545458--20545493	18	1.9	19	94	5	65	50	16	0	33	1.46
20550623--20550720	51	1.9	51	97	0	187	45	13	10	30	1.76
20552419--20552470	25	2.1	25	82	7	61	30	0	3	65	1.10
20552445--20552475	13	2.3	14	94	5	55	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120