genome.fa.s5.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  119  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36584986--36585028	14	2.8	16	79	13	54	53	0	0	46	1.00
36586822--36586855	6	5.7	6	100	0	68	67	14	17	0	1.23
36595411--36595442	16	2.0	16	93	0	55	50	0	3	46	1.17
36598583--36598835	59	4.3	59	88	2	375	32	3	31	32	1.76
36598582--36598835	117	2.2	118	88	3	379	33	3	31	31	1.76
36598583--36598835	29	8.7	29	69	18	143	32	3	31	32	1.76
36599950--36599996	21	2.2	20	79	17	51	46	4	0	48	1.21
36600691--36600718	13	2.2	13	100	0	56	28	7	21	42	1.79
36600756--36600799	17	2.6	17	92	0	70	56	2	2	38	1.24
36612290--36612343	20	2.7	20	76	0	63	12	27	22	37	1.91
36617246--36617277	3	10.7	3	100	0	64	68	0	0	31	0.90
36619810--36620192	191	2.0	191	95	0	685	20	24	26	28	1.99
36622100--36622163	29	2.2	29	97	0	119	56	17	9	17	1.66
36627707--36627786	39	2.1	39	81	6	92	47	5	3	43	1.43
36636741--36636786	23	2.0	24	91	4	76	63	2	0	34	1.07
36639354--36639421	2	34.0	2	100	0	136	0	50	0	50	1.00
36645829--36645877	16	3.1	16	81	0	62	20	6	20	53	1.67
36651004--36651156	77	2.0	77	97	0	288	37	13	3	44	1.63
36653825--36653851	4	6.8	4	100	0	54	22	0	0	77	0.76
36655148--36655461	119	2.6	119	96	0	574	28	15	7	48	1.71
36662046--36662183	43	3.3	43	84	2	190	28	27	18	25	1.98
36664333--36664419	40	2.2	40	81	6	95	22	21	13	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36667171--36667197	13	2.1	13	100	0	54	62	0	7	29	1.22
36674141--36674190	25	2.0	25	84	0	64	60	10	0	30	1.30
36702832--36702870	15	2.5	16	83	8	53	33	2	0	64	1.08
36703006--36703052	17	2.6	19	83	10	62	55	6	0	38	1.26
36703013--36703052	19	2.2	17	86	8	53	52	7	0	40	1.30
36705283--36705455	86	2.0	86	95	0	310	38	12	11	36	1.80
36711892--36712213	85	3.9	83	81	10	340	33	9	20	36	1.86
36712022--36712170	76	2.0	76	88	5	221	32	8	20	38	1.83
36715720--36715798	40	2.0	40	97	0	149	44	12	18	24	1.85
36727397--36727468	6	12.0	6	83	0	63	48	16	1	33	1.55
36733773--36733802	3	10.0	3	100	0	60	66	0	33	0	0.92
36734942--36734999	19	3.1	18	80	14	55	56	3	0	39	1.16
36734942--36735000	18	3.2	20	77	13	56	55	3	0	40	1.16
36738662--36738705	13	3.0	15	77	16	56	27	0	9	63	1.24
36740753--36741058	126	2.4	125	82	3	355	23	10	16	49	1.76
36751891--36751938	21	2.3	21	80	13	55	60	4	6	29	1.40
36755101--36755169	31	2.4	29	81	13	88	52	13	0	34	1.40
36759417--36759445	12	2.4	12	100	0	58	62	0	0	37	0.96
36767017--36767073	20	2.9	20	72	12	55	35	5	5	54	1.46
36767825--36767888	33	1.9	33	90	0	101	37	15	12	34	1.85
36768252--36768287	3	12.0	3	90	0	54	33	36	2	27	1.72
36775552--36775590	2	19.5	2	100	0	78	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36776660--36776695	12	2.9	12	87	4	54	77	0	16	5	0.94
36777903--36777965	31	2.1	28	83	13	74	25	19	15	39	1.91
36778082--36778269	60	3.2	59	72	6	184	40	17	15	26	1.89
36781790--36781843	26	2.1	26	100	0	108	55	0	7	37	1.28
36783123--36783213	39	2.3	39	96	0	173	20	10	20	47	1.80
36793267--36793320	27	2.0	26	86	10	74	11	9	7	72	1.29
36801420--36801483	29	2.2	30	88	2	94	39	17	7	35	1.78
36803005--36803057	14	3.4	15	76	12	54	67	3	0	28	1.07
36806226--36806281	22	2.5	23	82	8	62	32	12	3	51	1.56
36806226--36806282	23	2.5	23	80	11	64	31	12	3	52	1.55
36815415--36815539	28	4.4	28	78	9	83	36	4	24	34	1.77
36815442--36815830	58	6.7	56	75	14	267	33	2	28	36	1.69
36815429--36815898	28	16.1	28	72	14	251	34	1	26	36	1.68
36815430--36815818	86	4.4	87	75	12	323	33	1	28	35	1.68
36815746--36815855	31	3.7	30	82	2	123	35	0	23	40	1.61
36815433--36815895	29	15.9	29	72	11	191	35	1	25	37	1.68
36817751--36817816	17	3.9	17	89	0	105	59	4	0	36	1.18
36818017--36818061	23	1.9	24	86	4	65	66	6	4	22	1.33
36821568--36821621	24	2.2	24	83	0	63	55	14	0	29	1.40
36823397--36823423	2	13.5	2	100	0	54	48	0	0	51	1.00
36830238--36830288	21	2.5	21	75	6	52	58	3	0	37	1.16
36830401--36830467	29	2.3	27	78	14	71	49	1	5	43	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36837207--36837495	147	2.0	145	81	6	343	42	8	23	24	1.83
36841607--36841677	32	2.2	32	87	2	108	29	18	19	32	1.96
36859606--36859717	45	2.4	48	88	4	158	9	11	51	26	1.69
36859606--36859722	48	2.5	45	87	4	153	10	11	52	26	1.69
36859646--36859722	24	3.2	24	65	7	66	11	9	51	27	1.68
36859643--36859761	48	2.5	48	82	5	125	15	10	51	21	1.75
36862607--36862646	2	20.0	2	100	0	80	50	0	0	50	1.00
36874134--36874182	17	2.9	17	85	11	57	32	0	2	65	1.04
36874113--36874162	21	2.2	24	82	10	61	28	0	2	70	0.99
36877123--36877179	3	19.0	3	100	0	114	66	0	0	33	0.92
36877178--36877209	3	10.7	3	100	0	64	34	0	0	65	0.93
36879701--36879790	44	2.0	44	100	0	180	36	17	13	32	1.89
36885841--36885874	17	1.9	18	88	5	52	32	0	17	50	1.47
36887378--36887419	13	3.0	15	80	16	54	47	9	0	42	1.36
36890868--36890922	29	1.9	29	82	10	69	41	7	5	45	1.55
36896749--36897484	149	4.9	149	93	0	1204	27	20	17	34	1.95
36906806--36906875	17	4.1	17	77	3	77	44	1	1	52	1.18
36908490--36908835	162	2.1	162	88	4	527	25	17	12	43	1.85
36908905--36909337	29	14.7	28	66	20	172	29	28	6	35	1.81
36908937--36909416	118	4.1	119	83	2	578	29	29	5	35	1.80
36908954--36909426	177	2.7	178	82	4	595	29	30	5	35	1.79
36908937--36909416	59	8.2	59	83	6	521	29	29	5	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36914451--36914495	15	3.1	15	83	6	56	66	4	2	26	1.22
36915294--36915327	16	2.1	16	88	0	50	44	2	0	52	1.16
36915436--36915461	3	8.7	3	100	0	52	30	0	0	69	0.89
36919557--36919584	6	4.7	6	100	0	56	0	85	0	14	0.59
36931673--36931709	2	18.5	2	100	0	74	51	0	0	48	1.00
36931709--36931779	2	35.5	2	100	0	142	50	0	49	0	1.00
36932119--36932146	2	14.0	2	100	0	56	50	0	0	50	1.00
36936811--36936879	29	2.3	30	80	9	79	53	10	11	24	1.68
36942186--36942274	32	2.9	30	72	21	85	46	5	13	34	1.67
36942414--36942453	18	2.2	19	86	13	57	22	0	15	62	1.32
36955039--36955449	114	3.6	114	96	0	759	36	21	13	28	1.91
36956332--36956714	132	2.9	133	81	4	420	29	27	20	22	1.99
36963714--36963848	59	2.2	60	76	2	146	49	12	16	21	1.78
36964658--36964698	3	13.7	3	100	0	82	34	0	0	65	0.93
36969558--36969592	8	4.4	8	100	0	70	54	0	0	45	0.99
36972433--36972494	30	2.1	30	84	0	79	25	4	12	56	1.56
36972596--36972635	19	2.0	20	85	4	55	57	0	0	42	0.98
36973208--36973255	25	1.9	25	83	8	62	20	16	4	58	1.55
36979913--36979959	21	2.2	21	88	0	67	12	72	0	14	1.13
36979911--36979959	15	3.5	14	83	8	57	12	71	0	16	1.14
36979911--36979975	6	11.3	6	74	9	55	13	67	1	16	1.30
36980012--36980154	30	5.2	29	68	19	117	20	58	2	17	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36980043--36980085	15	2.9	15	85	0	59	23	67	0	9	1.19
36980040--36980130	21	4.8	21	66	18	56	21	61	1	15	1.40
36980097--36980139	15	2.9	15	85	0	59	23	67	0	9	1.19
36979991--36980140	18	8.3	19	66	10	82	21	60	2	15	1.47
36979929--36980179	54	4.6	54	90	3	335	19	59	3	17	1.52
37004068--37004099	16	2.0	16	100	0	64	68	6	0	25	1.12
37013474--37013500	13	2.1	13	100	0	54	40	29	0	29	1.57
37024312--37024336	5	5.0	5	100	0	50	20	20	40	20	1.92
37025074--37025259	59	3.1	58	82	10	216	23	15	13	47	1.80
37025103--37025207	29	3.6	29	73	19	92	25	15	13	45	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120