genome.fa.s5.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  92  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26486158--26486210	27	2.0	27	84	0	70	32	33	5	28	1.81
26488213--26488254	21	2.1	21	87	12	63	23	4	0	71	1.05
26488193--26488255	19	3.3	19	78	10	58	28	4	1	65	1.22
26488245--26488283	19	2.0	21	90	10	64	43	0	0	56	0.99
26488279--26488345	24	2.8	23	78	14	82	38	0	1	59	1.06
26498323--26498351	14	2.1	14	100	0	58	13	17	27	41	1.87
26503140--26503186	22	2.1	23	84	4	60	40	25	19	14	1.90
26503140--26503258	23	5.2	23	80	5	111	41	21	24	12	1.88
26508383--26508437	3	18.3	3	92	7	94	0	34	0	65	0.93
26509200--26509243	17	2.5	17	88	3	61	43	4	0	52	1.22
26509180--26509267	41	2.1	41	79	10	99	43	3	2	51	1.31
26509234--26509330	18	5.7	18	77	15	107	42	2	2	53	1.24
26509235--26509330	33	2.9	34	89	9	144	42	2	2	53	1.24
26509174--26509309	11	12.0	11	69	12	62	41	2	2	53	1.28
26509199--26509314	6	20.2	6	69	14	75	41	3	1	53	1.28
26511206--26511351	30	4.9	28	80	10	157	37	28	1	32	1.66
26511206--26511422	59	3.7	60	86	4	264	35	29	2	32	1.72
26511210--26511419	29	7.1	29	80	6	199	36	28	2	32	1.72
26511483--26511582	28	3.5	29	71	15	82	36	23	5	36	1.76
26511404--26511560	57	2.7	58	79	10	171	33	25	5	35	1.80
26511404--26511582	57	3.1	58	75	10	170	34	24	6	35	1.80
26511540--26511600	28	2.2	28	85	5	79	36	29	8	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26515305--26515331	9	3.0	9	100	0	54	44	11	44	0	1.39
26518671--26518718	17	2.7	18	90	6	71	10	8	0	81	0.88
26519724--26519762	19	2.1	19	95	0	69	38	17	10	33	1.84
26527389--26527646	58	4.3	60	84	2	254	28	20	16	34	1.94
26527489--26527646	60	2.6	61	88	3	230	27	22	17	32	1.96
26528610--26528679	30	2.3	30	82	4	79	61	4	7	27	1.41
26528642--26528707	30	2.2	30	86	10	91	60	4	3	31	1.32
26529824--26529848	13	1.9	13	100	0	50	56	0	8	36	1.29
26530234--26530443	106	2.0	106	96	0	384	26	25	19	29	1.98
26531052--26531105	22	2.5	20	82	11	63	22	5	37	35	1.77
26531204--26531653	86	5.3	86	88	5	653	52	3	4	38	1.41
26531204--26531653	175	2.6	174	88	4	648	52	3	4	38	1.41
26531669--26531702	11	3.0	11	91	4	50	50	0	5	44	1.26
26531785--26531832	12	3.7	12	77	20	51	41	10	0	47	1.37
26531795--26531829	17	2.1	16	89	5	52	48	8	0	42	1.33
26531785--26531842	28	2.1	28	83	0	71	43	12	0	44	1.41
26535587--26535784	59	3.4	57	74	8	200	34	4	31	29	1.78
26535757--26536022	30	8.9	30	88	3	358	34	3	25	36	1.73
26535757--26536022	60	4.4	60	90	3	394	34	3	25	36	1.73
26537923--26537983	17	3.7	16	80	6	68	54	4	0	40	1.22
26537973--26538006	17	2.0	17	88	0	50	52	11	0	35	1.38
26538121--26538180	31	1.9	31	86	6	86	43	21	11	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26538341--26538783	59	7.6	59	71	14	274	37	18	18	25	1.93
26538360--26538824	120	4.0	117	86	7	542	37	18	17	26	1.93
26538433--26538824	57	6.7	57	75	12	310	36	18	17	27	1.93
26539712--26539754	16	2.7	15	82	10	50	41	0	2	55	1.12
26541312--26541363	24	2.2	26	86	13	76	53	3	3	38	1.37
26541382--26541439	18	3.2	19	75	4	57	56	1	1	39	1.19
26541783--26541843	31	2.1	30	82	14	74	21	6	11	60	1.53
26554293--26554341	1	49.0	1	91	0	80	2	95	0	2	0.29
26564842--26564894	16	3.2	16	76	10	54	41	1	24	32	1.66
26564838--26564885	16	2.9	16	78	6	60	41	4	25	29	1.74
26565099--26565179	38	2.2	37	81	14	98	45	3	1	49	1.27
26565126--26565201	39	2.0	38	82	7	91	50	3	2	43	1.34
26572438--26572479	22	1.9	22	85	9	59	35	2	0	61	1.09
26585910--26585950	21	1.9	22	85	5	57	68	4	14	12	1.36
26603673--26604067	53	7.3	52	83	4	403	20	15	35	28	1.93
26603676--26604046	165	2.3	162	82	6	430	19	15	36	28	1.92
26604583--26604633	12	4.3	12	75	5	50	41	1	3	52	1.31
26604602--26604665	6	11.0	6	74	12	62	43	1	1	53	1.19
26604572--26604653	35	2.3	35	87	0	119	39	1	3	56	1.25
26604590--26604646	12	4.8	12	80	8	64	40	1	1	56	1.20
26604572--26604665	17	5.4	17	78	13	93	40	2	3	54	1.28
26604590--26604665	35	2.2	35	88	4	109	42	2	1	53	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26605051--26605109	6	9.8	6	73	14	50	38	5	1	54	1.33
26605067--26605093	14	1.9	14	100	0	54	37	11	0	51	1.37
26605166--26605232	24	2.6	24	90	9	98	46	32	8	11	1.72
26606158--26606346	29	6.4	29	70	19	135	31	31	3	33	1.75
26606127--26606386	59	4.4	59	87	3	339	32	30	4	32	1.78
26606127--26606386	117	2.2	117	86	5	348	32	30	4	32	1.78
26607612--26607704	17	5.4	17	71	11	73	46	1	3	49	1.25
26614307--26614903	92	6.5	92	94	0	991	36	19	16	26	1.93
26614307--26614903	275	2.2	276	92	0	991	36	19	16	26	1.93
26615227--26615295	11	6.0	11	76	15	59	37	4	0	57	1.18
26615228--26615302	6	12.8	6	73	16	59	38	4	1	56	1.27
26615260--26615286	14	1.9	14	100	0	54	37	11	0	51	1.37
26615244--26615301	31	1.9	31	89	3	91	37	5	1	55	1.33
26615361--26615416	28	2.1	27	84	12	73	42	30	10	16	1.82
26617951--26618044	17	5.4	17	71	8	73	46	1	2	50	1.20
26624148--26624929	92	8.5	92	94	0	1334	36	20	16	26	1.93
26624632--26624776	40	3.3	40	66	23	112	36	18	19	25	1.94
26625252--26625321	11	6.0	11	76	15	61	37	4	0	58	1.18
26625253--26625328	6	12.8	6	74	13	59	38	3	1	56	1.26
26625253--26625327	17	4.6	17	78	9	84	37	4	1	57	1.26
26625269--26625327	31	1.9	31	89	0	91	37	5	1	55	1.32
26627349--26627510	29	5.5	30	72	19	128	32	30	3	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26627389--26627538	29	5.1	28	71	19	119	29	32	4	34	1.76
26627318--26627576	59	4.4	59	88	3	323	32	29	5	32	1.79
26628800--26628894	18	5.4	17	76	9	93	45	1	3	50	1.24
26628819--26628861	6	7.3	6	78	5	52	48	0	0	51	1.00
26630561--26630587	5	5.4	5	100	0	54	18	0	0	81	0.69
26635204--26635238	8	4.5	8	92	7	54	82	5	0	11	0.82
26635204--26635238	15	2.2	16	90	5	54	82	5	0	11	0.82
26637263--26637820	49	11.4	49	70	10	356	37	18	25	18	1.93
26637263--26637820	98	5.7	97	84	4	586	37	18	25	18	1.93
26637235--26637820	196	3.0	198	81	4	686	37	17	25	18	1.93
26638281--26638391	17	6.4	17	82	7	134	41	1	2	54	1.25
26638299--26638391	6	16.0	6	72	14	79	43	2	1	53	1.19
26638281--26638391	35	3.2	35	83	6	129	41	1	2	54	1.25
26641313--26641450	29	4.8	29	81	0	114	21	18	16	44	1.87
26641325--26641450	58	2.2	58	83	0	153	22	17	15	44	1.86
26643581--26643611	12	2.6	12	89	0	53	22	32	0	45	1.53
26645287--26645358	30	2.4	31	83	2	92	38	15	15	30	1.88
26645287--26645366	31	2.6	30	82	2	106	40	15	16	28	1.88
26645997--26646061	26	2.4	27	85	10	80	20	3	6	70	1.22
26646015--26646072	17	3.3	17	84	13	73	20	0	6	72	1.07
26646043--26646072	8	3.6	8	95	4	51	20	0	10	70	1.16
26646022--26646074	9	5.9	9	79	16	65	20	0	9	69	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26646015--26646056	19	2.2	20	88	12	63	19	0	4	76	0.96
26646694--26646732	16	2.3	17	86	8	53	69	7	5	17	1.32
26650842--26650891	18	2.8	18	81	6	57	50	0	0	50	1.00
26650906--26650942	16	2.3	17	81	13	51	59	0	2	37	1.12
26653273--26653311	20	2.0	20	100	0	78	38	5	10	46	1.60
26653318--26653491	89	2.0	89	80	8	203	28	16	10	44	1.80
26653685--26653826	58	2.4	59	84	1	187	46	14	16	23	1.83
26654442--26654503	14	4.4	14	74	10	54	53	17	4	24	1.63
26655619--26655675	27	2.1	28	80	9	64	43	7	7	42	1.58
26657300--26657335	12	3.0	12	83	0	54	19	16	19	44	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120