genome.fa.s5.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  108  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31634124--31634213	32	2.8	32	81	13	96	53	6	12	27	1.63
31636221--31636268	22	2.1	24	88	11	75	41	2	2	54	1.24
31640474--31640498	13	1.9	13	100	0	50	16	0	4	80	0.87
31640479--31640515	15	2.2	17	86	13	51	18	0	5	75	0.99
31640558--31640619	31	2.0	31	93	0	106	41	0	24	33	1.55
31640784--31640829	23	2.0	23	83	8	58	30	4	2	63	1.26
31651805--31651851	24	2.1	23	85	14	64	61	0	2	36	1.08
31651802--31651858	22	2.5	24	81	16	75	59	0	3	36	1.14
31671318--31671422	15	7.0	15	85	0	129	24	53	13	8	1.67
31671318--31671426	45	2.4	45	89	0	164	24	53	12	9	1.68
31676632--31676676	23	2.0	23	86	0	63	31	13	20	35	1.91
31680161--31680231	29	2.4	29	83	6	81	49	1	0	49	1.09
31680172--31680247	30	2.6	29	77	12	73	55	1	0	43	1.08
31680835--31681016	88	2.1	88	81	6	208	45	11	13	29	1.79
31684032--31684075	23	1.9	23	86	9	63	31	4	4	59	1.38
31687631--31687668	2	19.0	2	94	0	67	47	0	2	50	1.15
31689373--31689403	4	8.0	4	92	7	55	25	0	25	48	1.52
31692204--31692509	59	5.2	58	89	2	441	25	16	9	48	1.76
31692204--31692509	117	2.6	117	93	1	506	25	16	9	48	1.76
31692778--31692827	25	2.0	24	88	3	73	62	8	2	28	1.35
31692787--31692837	25	2.0	25	85	7	68	60	9	1	27	1.39
31694595--31694666	30	2.4	30	83	6	83	50	16	12	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31695889--31695952	29	2.1	31	88	5	96	26	9	21	42	1.83
31705382--31705416	18	1.9	19	88	11	56	57	20	11	11	1.64
31707482--31707531	26	1.9	25	84	8	64	36	0	0	64	0.94
31717442--31717596	54	2.9	54	80	0	175	29	16	23	30	1.96
31717512--31717616	54	1.9	54	80	3	122	35	18	18	28	1.94
31722475--31722595	23	5.2	23	82	11	156	11	25	23	39	1.88
31722475--31722595	48	2.6	46	87	7	172	11	25	23	39	1.88
31722560--31722634	39	1.9	39	91	0	123	12	22	21	44	1.85
31722594--31722687	23	4.0	23	75	16	86	11	25	19	43	1.84
31724248--31724296	20	2.5	20	83	3	73	69	6	4	20	1.27
31730547--31730624	26	3.0	25	78	10	68	64	0	0	35	0.94
31731203--31731259	28	2.0	29	86	3	80	33	8	7	50	1.60
31740973--31741050	38	2.1	38	92	0	129	42	6	14	37	1.71
31741523--31741578	27	2.1	27	90	6	87	17	10	14	57	1.65
31742132--31742182	17	3.1	17	81	13	61	56	0	0	43	0.99
31742865--31742901	2	18.5	2	100	0	74	51	0	0	48	1.00
31758604--31758636	6	5.5	6	96	0	57	36	33	12	18	1.88
31761093--31761137	17	2.5	18	85	7	56	37	11	0	51	1.38
31764219--31764244	13	2.0	13	100	0	52	38	30	7	23	1.83
31766907--31767006	48	2.1	48	98	0	191	41	7	10	42	1.65
31771607--31771632	2	13.0	2	100	0	52	50	0	0	50	1.00
31776437--31776486	14	3.4	14	78	10	55	38	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31776437--31776490	15	3.6	15	77	7	56	37	0	0	62	0.95
31777639--31777722	33	2.5	35	75	18	88	65	1	2	30	1.13
31790178--31790212	11	3.2	11	100	0	70	45	8	8	37	1.65
31793383--31793408	4	6.5	4	100	0	52	76	23	0	0	0.78
31794989--31795072	42	2.0	42	90	0	132	48	20	0	30	1.50
31799391--31799431	22	1.9	21	85	14	57	36	14	0	48	1.44
31800742--31800818	29	2.7	27	73	16	66	48	3	6	41	1.47
31800704--31800806	30	3.5	30	77	9	79	49	2	11	35	1.54
31803545--31803578	17	1.9	17	88	5	50	61	0	5	32	1.20
31816165--31816213	21	2.2	23	89	7	75	42	0	0	57	0.99
31816173--31816224	21	2.4	21	81	12	61	48	1	1	48	1.24
31816785--31816830	18	2.3	20	85	10	60	34	2	10	52	1.49
31816832--31816884	19	2.9	18	72	8	54	18	1	15	64	1.38
31820419--31820480	31	2.0	31	93	0	106	40	8	4	46	1.55
31821402--31821515	54	2.1	55	81	4	142	34	15	15	34	1.90
31821466--31821595	60	2.2	60	87	2	181	24	15	17	42	1.88
31822832--31822874	6	7.2	6	89	0	59	23	30	0	46	1.52
31822832--31822877	18	2.6	18	85	0	65	23	28	0	47	1.52
31824644--31824733	44	2.0	45	91	6	148	28	14	11	45	1.79
31824689--31824965	60	4.6	59	77	11	271	29	18	12	39	1.88
31824694--31824955	120	2.2	121	82	7	327	29	18	13	38	1.89
31825627--31825727	30	3.4	30	84	2	132	61	3	7	26	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31826864--31826888	13	1.9	13	100	0	50	56	0	12	32	1.36
31827243--31827555	60	5.2	58	80	9	292	38	16	17	26	1.91
31827243--31827551	119	2.6	119	79	8	324	38	16	17	26	1.92
31828457--31828507	15	3.5	14	80	19	52	47	1	3	47	1.32
31837168--31837210	21	2.0	21	86	8	61	25	9	2	62	1.37
31843771--31843814	2	22.0	2	90	0	52	40	50	9	0	1.34
31845255--31845583	164	2.0	164	95	1	597	34	19	13	32	1.91
31856334--31856378	15	3.0	15	76	0	54	6	15	53	24	1.66
31856619--31856660	19	2.3	18	80	15	50	33	0	11	54	1.37
31857054--31857084	6	5.2	6	100	0	62	16	51	16	16	1.77
31864885--31864923	14	2.7	15	84	8	53	28	0	10	61	1.28
31866254--31866297	21	2.1	21	82	0	52	38	15	20	25	1.92
31869624--31869652	15	2.0	15	93	6	51	68	0	3	27	1.05
31871123--31871193	31	2.3	31	79	11	76	25	12	16	45	1.83
31871928--31871965	20	1.9	19	89	5	58	76	5	2	15	1.08
31876779--31876810	3	10.7	3	100	0	64	65	0	0	34	0.93
31879014--31879072	21	2.7	22	79	10	68	38	3	0	57	1.15
31881605--31881630	3	8.7	3	100	0	52	65	0	34	0	0.93
31881640--31881695	29	1.9	29	100	0	112	28	8	37	25	1.86
31881664--31881818	75	2.1	75	100	0	310	20	16	31	32	1.94
31883143--31883186	21	2.1	22	87	8	65	25	9	11	54	1.65
31887676--31887727	26	2.0	25	81	3	59	42	7	9	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31889530--31889566	3	12.3	3	88	11	58	2	32	0	64	1.07
31896048--31896088	21	1.9	22	85	14	59	29	19	4	46	1.71
31902677--31902739	32	2.1	31	85	11	87	55	3	4	36	1.37
31904950--31905077	63	2.1	63	81	8	156	54	2	4	38	1.34
31904973--31905108	60	2.2	65	87	8	196	52	3	5	38	1.41
31905167--31905214	19	2.6	19	83	3	53	31	4	0	64	1.12
31905324--31905353	5	6.2	5	92	7	53	83	0	0	16	0.65
31910839--31910863	1	25.0	1	100	0	50	0	100	0	0	0.00
31913511--31913576	35	1.9	35	90	3	107	36	1	3	59	1.22
31919601--31919632	15	2.1	16	94	5	57	78	0	0	21	0.76
31934805--31934861	26	2.2	25	78	3	60	54	14	5	26	1.61
31942730--31942895	91	1.8	91	85	3	237	41	18	15	24	1.89
31942721--31942966	90	2.7	90	79	6	266	42	17	15	24	1.88
31951119--31951178	29	2.1	29	82	17	81	40	0	1	58	1.08
31951116--31951178	27	2.2	28	86	5	83	39	0	1	58	1.07
31956823--31956848	7	3.7	7	100	0	52	88	0	0	11	0.52
31959103--31959134	17	1.9	16	93	6	55	28	3	0	68	1.04
31960409--31960462	13	4.1	14	81	9	60	40	3	18	37	1.69
31960402--31960464	26	2.4	25	80	12	65	36	3	20	39	1.69
31965718--31965768	21	2.4	22	80	6	61	33	0	1	64	1.05
31965895--31965927	16	2.1	16	94	0	57	66	0	0	33	0.92
31966252--31966309	9	6.1	9	75	18	55	39	0	3	56	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31966251--31966310	20	3.1	19	90	9	86	41	0	3	55	1.16
31966632--31966849	110	2.0	110	84	3	287	26	14	25	33	1.94
31967642--31967668	2	13.5	2	100	0	54	48	0	0	51	1.00
31969578--31969618	3	13.7	3	86	0	55	24	36	2	36	1.69
31975323--31975377	22	2.5	22	76	5	58	30	25	21	21	1.98
31979062--31979141	18	4.4	18	73	14	67	48	1	1	48	1.17
31979062--31979103	17	2.4	18	88	4	59	45	2	0	52	1.13
31979091--31979146	15	4.0	13	72	22	51	57	0	1	41	1.09
31981126--31981274	29	5.1	28	71	19	126	30	32	3	33	1.74
31981113--31981311	59	3.4	59	88	6	298	31	33	4	31	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120