genome.fa.s5.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  14  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3902243--3902319	29	2.6	29	83	6	93	55	2	0	41	1.13
3912238--3912296	29	2.0	29	90	0	91	42	3	6	47	1.46
3912633--3912660	3	9.3	3	100	0	56	32	0	0	67	0.91
3913477--3913515	15	2.5	15	87	4	51	33	2	0	64	1.08
3913477--3913507	16	1.9	16	93	0	53	35	3	0	61	1.12
3913549--3913589	21	1.9	22	85	5	57	34	7	21	36	1.82
3913863--3913913	27	1.9	26	84	4	66	25	5	0	68	1.12
3914543--3914621	31	2.6	29	78	6	77	35	11	12	40	1.79
3915276--3915320	14	3.3	13	84	9	63	26	6	0	66	1.16
3916869--3916946	34	2.3	33	86	6	111	28	5	14	52	1.62
3916880--3916947	34	2.0	35	94	2	120	26	4	14	54	1.59
3922198--3922247	19	2.7	18	87	12	66	4	12	18	66	1.39
3924039--3924106	29	2.3	29	85	5	84	35	17	7	39	1.78
3925207--3925268	2	31.0	2	100	0	124	50	0	50	0	1.00
3928698--3928741	14	2.8	16	80	16	56	52	0	0	47	1.00
3929070--3929100	14	2.2	14	94	0	53	51	0	0	48	1.00
3939446--3939502	26	2.2	26	77	0	60	40	1	19	38	1.62
3941993--3942038	25	1.9	25	86	8	69	34	4	6	54	1.46
3947392--3947454	24	2.6	24	87	0	90	25	14	9	50	1.72
3963674--3963700	7	3.9	7	100	0	54	29	0	0	70	0.88
3963712--3963754	22	2.1	21	87	12	63	55	0	0	44	0.99
3963681--3963751	29	2.5	29	79	4	92	49	0	1	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3963710--3963760	20	2.7	18	77	19	50	49	1	0	49	1.12
3966900--3966952	22	2.4	21	81	12	70	37	7	11	43	1.69
3982694--3982790	48	2.0	48	100	0	194	21	24	12	41	1.88
3986488--3986548	22	2.6	24	76	10	72	24	13	9	52	1.70
3988465--3988515	24	2.1	24	85	0	66	21	9	7	60	1.53
3989459--3989635	97	1.8	97	91	2	293	40	15	18	26	1.90
3989894--3989954	29	2.1	29	82	8	72	39	1	24	34	1.65
3989922--3990050	29	4.4	29	76	13	115	35	3	24	36	1.72
3989943--3990372	29	14.9	28	75	13	216	35	2	25	35	1.70
3990097--3990362	86	3.1	87	85	5	335	38	1	24	34	1.67
3991970--3992010	11	3.7	11	90	9	66	60	0	0	39	0.96
3992302--3992893	209	2.8	209	87	2	841	21	22	18	37	1.94
3992822--3992941	48	2.5	48	93	0	204	20	23	18	37	1.94
3992614--3993149	257	2.1	257	89	1	817	20	22	19	37	1.94
3992871--3993430	208	2.7	207	88	2	806	20	21	19	37	1.94
3993268--3993594	158	2.0	161	84	2	426	22	21	20	36	1.96
4005330--4005421	45	2.0	45	97	0	175	47	10	18	22	1.79
4005617--4005684	30	2.3	29	82	12	77	36	2	25	35	1.71
4005617--4005951	29	11.5	29	69	11	105	36	4	24	34	1.75
4005790--4005883	30	3.2	29	68	8	73	39	3	18	39	1.66
4005779--4005912	59	2.3	59	86	3	189	40	2	20	35	1.68
4005694--4005950	59	4.4	58	74	6	187	36	3	24	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4005667--4005943	29	9.5	29	69	14	106	36	4	24	34	1.76
4006892--4006928	7	5.1	7	87	6	56	67	0	0	32	0.91
4006892--4006928	15	2.6	14	86	4	56	67	0	0	32	0.91
4007581--4007618	17	2.3	16	95	4	67	52	2	0	44	1.14
4012896--4012958	18	3.3	19	71	15	58	47	0	9	42	1.36
4014033--4014071	6	6.3	6	82	5	51	43	0	0	56	0.99
4013991--4014060	18	3.9	18	78	9	81	37	0	2	60	1.12
4015774--4016101	60	5.6	58	78	8	263	35	27	2	33	1.72
4015773--4016087	30	10.7	29	76	7	228	35	27	2	34	1.70
4016038--4016128	29	3.2	28	75	7	85	38	30	3	27	1.73
4030436--4031545	210	5.3	210	87	1	1532	22	21	17	38	1.93
4030436--4031545	417	2.7	418	86	3	1518	22	21	17	38	1.93
4031479--4031598	49	2.4	49	97	0	222	23	26	10	40	1.86
4031267--4031810	259	2.1	259	86	1	759	24	22	15	37	1.92
4031528--4031969	210	2.1	208	88	2	636	23	22	16	38	1.93
4031935--4032008	37	2.0	37	92	5	123	22	18	21	36	1.95
4031785--4032144	159	2.3	159	85	2	447	22	21	18	37	1.94
4031946--4032337	209	1.9	207	86	3	563	22	21	18	37	1.94
4031577--4032702	368	3.0	367	89	2	1641	22	20	18	38	1.93
4032314--4033334	210	4.9	210	86	1	1361	23	20	17	38	1.93
4031947--4033753	787	2.3	778	82	7	2070	23	20	17	38	1.93
4033150--4033494	161	2.2	160	89	1	530	24	20	17	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4033311--4033754	209	2.1	208	88	2	667	22	21	17	38	1.93
4033604--4033879	124	2.2	123	87	2	390	22	20	18	39	1.93
4034688--4035363	209	3.2	207	86	2	913	36	16	22	24	1.94
4035806--4035851	17	2.8	16	80	9	56	41	0	2	56	1.11
4035813--4035891	17	4.7	16	71	20	63	34	0	8	56	1.30
4037509--4037771	30	8.9	30	78	10	231	38	26	0	34	1.62
4037509--4037805	30	10.1	29	77	10	205	36	27	1	34	1.67
4037509--4037772	90	3.0	89	81	6	270	38	26	0	34	1.62
4037757--4037835	29	2.8	30	80	5	76	31	32	6	29	1.82
4037769--4037835	29	2.3	29	84	2	82	26	35	7	29	1.84
4053654--4053695	14	2.9	15	85	7	68	11	2	30	54	1.49
4058980--4059054	24	3.1	24	92	0	123	54	6	12	26	1.61
4058968--4059054	24	3.6	24	89	3	122	51	6	13	27	1.66
4060910--4060992	24	3.5	24	86	0	85	49	9	12	28	1.71
4060925--4060996	24	3.0	24	91	0	108	54	8	11	26	1.64
4063898--4064214	157	2.0	157	89	3	487	28	15	22	34	1.94
4064517--4064579	24	2.6	24	87	0	90	26	14	7	50	1.70
4065693--4065804	41	2.8	40	82	2	134	24	15	27	33	1.95
4068066--4068107	14	2.9	15	85	7	68	11	2	30	54	1.49
4072827--4072865	20	1.9	21	84	5	53	46	0	12	41	1.42
4083560--4083603	16	2.8	16	92	0	70	18	13	31	36	1.90
4086627--4086668	14	2.9	15	78	7	50	14	4	28	52	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4096893--4096964	21	3.5	21	66	11	58	27	18	23	30	1.97
4096848--4096957	40	2.7	40	90	1	166	24	14	28	32	1.94
4118948--4119192	89	2.7	89	81	9	275	37	2	24	34	1.71
4118948--4119192	30	8.2	30	80	4	219	37	2	24	34	1.71
4118948--4119192	59	4.1	59	75	11	194	37	2	24	34	1.71
4119116--4119201	30	3.0	29	76	6	86	40	5	18	34	1.75
4120233--4120273	11	3.7	11	83	0	55	29	2	4	63	1.28
4128358--4128397	20	2.0	20	95	0	71	25	22	5	47	1.71
4129692--4129749	16	3.5	17	73	21	52	43	22	5	29	1.75
4129700--4129749	16	3.1	16	78	16	59	44	22	6	28	1.76
4130589--4130632	16	2.7	16	82	3	52	29	2	20	47	1.62
4141768--4141892	41	3.0	41	94	0	205	28	4	29	36	1.78
4141956--4141988	17	1.9	17	100	0	66	42	0	9	48	1.35
4146235--4146268	17	2.1	16	88	5	50	38	0	8	52	1.33
4147834--4147896	25	2.5	25	97	0	117	34	0	3	61	1.12
4147854--4147903	8	6.4	8	79	6	50	34	0	2	64	1.05
4148112--4148153	20	2.1	20	95	0	75	14	16	11	57	1.66
4149129--4149166	18	2.1	18	95	0	67	28	10	26	34	1.90
4149089--4149221	68	2.0	68	100	0	266	31	8	19	40	1.81
4154647--4154680	17	2.1	16	88	5	50	52	0	0	47	1.00
4155002--4155030	13	2.2	13	100	0	58	72	6	0	20	1.07
4155108--4155138	3	10.3	3	100	0	62	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4155473--4155513	21	2.0	21	85	9	57	58	0	7	34	1.26
4155473--4155513	22	1.9	21	85	5	55	58	0	7	34	1.26
4156197--4156246	22	2.3	22	86	3	66	8	8	18	66	1.42
4156232--4156266	17	2.1	17	94	0	61	14	5	8	71	1.29
4156218--4156330	51	2.3	49	81	9	131	9	5	19	65	1.41
4156210--4156274	22	3.2	21	72	20	66	9	6	15	69	1.35
4156299--4156409	12	9.6	11	73	17	84	9	3	18	69	1.30
4156259--4156409	24	6.4	23	73	15	105	9	3	18	68	1.33
4156192--4156409	72	3.1	70	79	11	196	9	5	17	67	1.37
4156319--4156423	44	2.4	44	82	3	113	9	3	17	69	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120