genome.fa.s5.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  107  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31151620--31151671	21	2.6	21	82	11	56	23	1	3	71	1.13
31155978--31156219	15	14.9	15	71	10	88	29	22	22	26	1.99
31156050--31156184	18	7.8	18	73	6	102	28	20	22	27	1.99
31156039--31156214	48	3.5	48	80	6	172	27	22	23	27	1.99
31157535--31157573	20	2.0	20	90	10	62	2	15	17	64	1.41
31163104--31163158	20	2.7	20	94	2	92	50	20	5	23	1.68
31166095--31166164	24	3.0	24	81	6	81	40	2	2	54	1.30
31166133--31166213	31	2.6	30	84	1	108	38	2	4	54	1.35
31166627--31166651	2	12.5	2	100	0	50	48	0	0	52	1.00
31168938--31168965	3	9.3	3	100	0	56	0	0	64	35	0.94
31170578--31170975	188	2.1	188	84	3	514	41	13	8	36	1.76
31176380--31176421	20	2.1	20	100	0	84	50	26	4	19	1.67
31178451--31178516	31	2.1	31	88	5	98	33	13	9	43	1.76
31181835--31181872	20	1.9	19	94	5	67	36	0	2	60	1.11
31183267--31183357	37	2.4	37	82	15	107	42	1	4	51	1.29
31183893--31183947	27	2.0	29	82	13	71	38	0	5	56	1.23
31195082--31195135	16	3.2	16	76	7	54	27	3	5	62	1.34
31206699--31206741	16	2.5	18	82	17	56	32	0	4	62	1.15
31208133--31208194	2	31.0	2	96	0	115	48	0	1	50	1.10
31225859--31225900	20	2.1	20	100	0	84	26	14	23	35	1.93
31230166--31230295	31	4.3	31	75	9	115	45	10	18	26	1.81
31230104--31230275	90	1.9	91	80	5	206	49	11	16	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31230220--31230273	28	2.0	27	85	3	72	55	7	12	24	1.63
31230104--31230295	90	2.1	91	79	4	201	48	11	16	23	1.78
31230695--31230782	28	3.0	28	73	17	72	57	4	5	31	1.42
31230695--31230769	28	2.7	27	76	19	73	57	4	6	32	1.43
31230915--31230981	15	4.4	15	76	1	71	5	25	0	68	1.12
31230924--31230981	5	11.4	5	77	1	53	5	24	0	70	1.07
31235166--31235214	21	2.3	21	80	19	66	59	18	16	6	1.57
31248933--31248961	5	5.8	5	100	0	58	41	58	0	0	0.98
31254292--31254421	69	1.9	68	81	9	158	20	32	8	39	1.82
31258596--31258629	2	17.0	2	100	0	68	50	0	0	50	1.00
31264223--31264272	23	2.2	23	85	7	66	26	12	8	54	1.64
31264647--31264698	18	3.1	17	77	5	52	34	0	1	63	1.06
31272616--31272646	6	5.3	6	92	7	55	16	67	16	0	1.23
31273945--31273979	18	2.0	18	94	5	63	42	0	0	57	0.99
31274445--31274482	18	2.1	18	95	0	67	5	21	0	73	1.02
31274448--31274507	25	2.4	25	88	8	86	1	20	1	76	0.96
31277186--31277227	21	2.0	21	85	0	57	40	19	40	0	1.51
31277549--31277721	43	4.0	43	82	0	202	24	18	28	28	1.98
31277549--31277721	86	2.0	86	85	0	229	24	18	28	28	1.98
31287650--31287677	12	2.3	12	100	0	56	28	21	42	7	1.79
31301695--31301784	33	2.8	32	76	18	98	42	0	0	57	0.98
31304690--31304716	1	27.0	1	100	0	54	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31307442--31307485	14	3.0	14	78	12	52	29	9	2	59	1.41
31307452--31307489	16	2.4	16	82	4	51	26	7	2	63	1.35
31308119--31308160	17	2.4	17	88	4	66	40	9	11	38	1.75
31321926--31321973	6	8.0	6	79	6	53	45	0	4	50	1.21
31323933--31324024	19	5.2	18	73	17	68	40	1	2	56	1.18
31323995--31324037	20	2.2	20	86	0	59	37	2	2	58	1.24
31323976--31324042	19	3.4	19	77	8	64	38	1	4	55	1.29
31328309--31328385	31	2.4	30	81	12	75	57	0	1	41	1.07
31328324--31328385	31	1.9	32	83	9	81	54	0	1	43	1.09
31329588--31329711	30	4.2	30	88	3	162	34	1	25	37	1.66
31330844--31330915	36	2.0	37	83	2	92	29	4	11	55	1.53
31331535--31331617	17	4.9	16	85	5	85	53	2	0	44	1.13
31331548--31331610	6	11.0	6	76	10	69	52	3	0	44	1.17
31331549--31331603	11	4.9	11	80	12	67	54	3	0	41	1.18
31331535--31331621	34	2.5	33	83	7	102	54	3	0	42	1.17
31342468--31342500	16	2.1	16	88	5	50	84	3	9	3	0.82
31348087--31348359	43	6.3	43	72	13	150	22	15	20	41	1.90
31356032--31356072	16	2.7	15	85	7	55	39	2	2	56	1.26
31360206--31360231	2	13.0	2	100	0	52	50	0	0	50	1.00
31363986--31364024	17	2.3	17	90	0	60	15	12	25	46	1.81
31372364--31372415	15	3.3	15	75	15	59	34	28	36	0	1.58
31372367--31372451	9	9.8	9	82	7	95	30	31	37	0	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31372362--31372433	33	2.2	33	97	0	135	34	29	36	0	1.58
31372460--31372502	18	2.4	18	76	0	50	25	44	27	2	1.66
31377559--31377596	19	2.1	19	90	5	60	23	21	15	39	1.92
31379158--31379945	162	4.9	160	82	7	890	32	10	14	42	1.80
31379158--31379945	161	4.9	162	83	6	914	32	10	14	42	1.80
31379509--31379945	155	2.8	152	84	7	511	32	10	14	43	1.79
31379154--31379945	317	2.5	316	83	5	967	32	10	14	42	1.80
31387898--31387937	21	1.9	21	84	0	53	2	17	12	67	1.33
31414137--31414407	60	4.5	60	87	2	375	32	13	10	43	1.77
31414167--31414375	29	7.0	29	65	11	102	35	13	9	42	1.76
31418433--31418457	4	6.2	4	100	0	50	52	24	0	24	1.48
31419544--31419586	17	2.5	16	85	11	50	20	18	2	58	1.50
31424899--31424938	17	2.3	17	86	4	53	25	20	2	52	1.59
31425008--31425032	13	1.9	13	100	0	50	60	0	16	24	1.36
31426635--31426800	29	5.7	28	68	24	103	34	1	29	34	1.66
31426637--31426808	59	3.0	56	87	6	229	32	1	31	34	1.66
31428770--31428808	18	2.1	19	85	4	53	58	2	2	35	1.25
31429066--31429107	21	2.1	21	86	8	61	69	2	4	23	1.20
31441594--31441674	30	2.6	31	84	9	105	28	12	20	38	1.89
31465775--31465826	15	3.1	15	76	23	59	57	5	0	36	1.23
31474222--31474258	7	5.3	7	100	0	74	27	45	0	27	1.54
31477346--31477396	25	2.0	25	92	0	84	35	9	5	49	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31491076--31491201	63	2.0	63	84	3	164	26	14	14	45	1.83
31493408--31493434	14	1.9	14	100	0	54	37	3	7	51	1.48
31496388--31496619	127	1.8	127	95	0	419	31	14	14	39	1.86
31495760--31497442	916	1.8	907	92	1	2405	34	14	14	36	1.87
31517192--31517234	18	2.4	18	84	3	52	62	0	0	37	0.95
31519573--31519606	11	2.9	12	86	8	52	55	0	0	44	0.99
31519560--31519602	17	2.5	17	88	11	61	46	0	0	53	1.00
31521306--31521383	30	2.6	30	84	10	88	41	17	6	34	1.76
31521380--31521450	29	2.5	30	80	13	78	32	26	4	36	1.76
31523657--31523690	18	1.9	17	88	5	50	47	20	20	11	1.81
31526772--31526805	18	1.9	18	88	5	52	38	8	2	50	1.49
31529599--31529640	19	2.3	18	88	12	59	28	0	4	66	1.12
31530945--31531001	22	2.6	21	76	13	53	31	26	15	26	1.96
31538560--31538657	47	2.0	49	82	3	119	51	3	2	43	1.29
31558910--31558956	23	2.0	23	100	0	94	51	8	4	36	1.52
31559102--31559142	21	2.0	21	85	0	55	39	9	14	36	1.79
31562332--31562391	31	1.9	31	93	0	102	28	23	10	38	1.87
31565410--31565478	31	2.2	32	82	7	79	39	13	14	33	1.85
31567185--31567232	24	2.0	24	84	8	62	58	0	0	41	0.98
31577779--31577807	3	9.7	3	100	0	58	34	0	31	34	1.58
31578204--31578269	35	1.9	34	87	3	96	60	1	0	37	1.06
31584851--31584923	13	5.7	13	76	17	64	71	0	28	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31584857--31584925	19	3.8	18	73	21	54	72	0	27	0	0.85
31587156--31587192	19	1.9	19	94	0	65	43	5	13	37	1.67
31606684--31606730	22	2.1	22	84	7	60	70	4	0	25	1.05
31612977--31613011	17	1.9	19	88	11	56	25	17	5	51	1.67
31618549--31618621	38	1.9	37	83	10	94	39	6	17	35	1.77
31622204--31622261	29	2.0	29	82	0	71	36	6	5	51	1.51
31622605--31622642	19	2.1	18	85	14	51	55	5	0	39	1.23
31622647--31622694	9	5.0	9	85	10	51	72	6	0	20	1.05
31622645--31622710	30	2.3	29	76	10	73	68	4	0	27	1.09
31634050--31634161	60	1.9	59	83	5	145	50	8	13	26	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120