genome.fa.s5.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  62  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18405287--18405373	30	2.9	30	89	3	131	25	28	18	27	1.98
18407573--18407873	82	3.7	79	76	9	239	42	11	12	33	1.80
18408000--18408119	51	2.4	50	83	10	140	53	5	1	39	1.35
18409078--18409111	2	17.0	2	100	0	68	50	0	0	50	1.00
18413975--18414065	38	2.4	39	77	14	100	58	3	4	34	1.34
18414726--18414815	38	2.4	37	78	14	94	33	2	5	58	1.33
18414796--18414860	9	7.4	9	72	11	55	29	0	7	63	1.22
18414833--18414872	19	2.1	19	85	4	53	30	2	7	60	1.38
18415667--18415730	19	3.4	19	74	8	67	31	29	20	18	1.96
18415649--18415728	38	2.1	38	83	0	97	35	26	20	18	1.95
18419484--18419515	13	2.4	14	89	10	57	56	6	0	37	1.25
18422531--18422564	17	2.0	17	100	0	68	29	11	41	17	1.85
18425588--18425778	23	8.5	23	71	16	132	42	21	24	11	1.86
18425681--18425778	23	4.2	23	83	10	135	40	23	24	11	1.87
18432003--18432193	23	8.5	23	71	16	123	41	21	25	11	1.86
18432057--18432134	39	2.0	39	87	0	111	41	23	23	12	1.88
18432096--18432193	23	4.2	23	82	12	128	39	23	25	11	1.88
18446111--18446185	37	2.0	36	82	5	87	32	26	6	34	1.82
18449031--18449093	33	1.9	33	84	9	85	38	6	17	38	1.75
18452853--18452914	14	4.3	14	80	8	79	53	0	9	37	1.34
18452824--18452914	30	3.0	30	77	9	85	50	0	10	38	1.38
18453140--18453164	13	1.9	13	100	0	50	16	0	64	20	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18463149--18463191	16	2.6	16	81	3	50	41	0	4	53	1.21
18469785--18469813	1	29.0	1	100	0	58	0	100	0	0	0.00
18470728--18470781	21	2.6	21	82	11	67	27	27	14	29	1.95
18471204--18471256	27	2.0	27	100	0	106	45	22	18	13	1.84
18474310--18474372	21	3.2	20	78	10	67	57	6	4	31	1.45
18476115--18476143	3	9.7	3	100	0	58	31	0	0	68	0.89
18476734--18476776	4	10.8	4	85	9	61	76	0	23	0	0.78
18477180--18477222	21	2.1	21	86	4	61	27	0	11	60	1.31
18477769--18477817	16	3.3	15	73	26	50	59	6	0	34	1.22
18479113--18479197	43	2.0	43	81	9	102	29	10	11	48	1.73
18484419--18484483	4	16.2	4	85	6	87	0	32	0	67	0.91
18485453--18485526	31	2.4	31	93	2	123	45	1	0	52	1.09
18485486--18485529	23	2.0	23	90	4	72	52	0	0	47	1.00
18486234--18486309	40	1.9	40	94	0	134	23	26	19	30	1.98
18487274--18487335	16	3.9	16	80	0	52	40	4	22	32	1.75
18487517--18487661	56	2.6	56	80	9	172	53	2	0	43	1.17
18491508--18491566	24	2.3	25	83	13	68	55	1	37	5	1.32
18492592--18492640	4	12.8	4	79	16	50	79	0	20	0	0.73
18492588--18492640	15	3.9	14	84	15	67	81	0	18	0	0.70
18496398--18496444	22	2.1	22	84	7	60	57	0	2	40	1.11
18497030--18497058	15	2.0	15	93	6	51	55	20	0	24	1.44
18512948--18513010	27	2.5	25	80	12	74	22	9	1	66	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18517876--18518320	192	2.3	192	80	3	498	27	25	17	29	1.98
18526924--18526970	23	2.0	23	100	0	94	48	12	12	25	1.77
18539377--18539523	53	2.8	52	83	6	188	29	12	25	33	1.92
18539370--18539542	52	3.3	52	81	4	195	27	11	24	35	1.90
18545723--18546003	141	2.0	141	97	0	526	32	13	20	33	1.92
18546428--18546619	61	3.1	61	81	5	192	37	14	11	36	1.82
18546602--18546666	34	1.9	34	84	6	87	32	4	7	55	1.49
18547600--18547646	19	2.5	19	76	10	53	74	0	10	14	1.07
18548050--18548168	58	2.0	59	82	7	145	25	10	22	42	1.85
18551239--18551286	24	2.0	24	83	0	60	47	2	31	18	1.60
18551326--18551420	47	2.0	47	97	0	181	44	10	10	34	1.73
18555722--18555947	59	3.9	58	89	6	311	35	3	28	32	1.73
18555721--18555951	29	7.9	29	69	25	132	35	3	29	32	1.74
18556552--18556588	19	2.0	19	89	5	58	2	18	0	78	0.87
18556940--18556973	10	3.4	10	87	0	50	41	0	0	58	0.98
18557742--18557804	17	3.8	17	77	6	67	57	4	0	38	1.20
18557733--18557805	33	2.2	33	82	0	83	53	4	1	41	1.28
18557726--18557799	27	2.7	27	78	0	76	52	4	1	41	1.28
18558129--18558674	199	2.7	200	90	1	866	18	22	22	36	1.95
18570418--18570815	59	6.8	59	89	3	540	35	2	28	34	1.69
18570418--18570815	117	3.4	117	84	4	538	35	2	28	34	1.69
18570709--18570811	30	3.5	29	72	17	86	36	2	25	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18571868--18571901	10	3.4	10	87	0	50	41	0	0	58	0.98
18572669--18572731	17	3.8	17	77	6	67	57	4	0	38	1.20
18572660--18572732	33	2.2	33	82	0	83	53	4	1	41	1.28
18572653--18572726	27	2.7	27	78	0	76	52	4	1	41	1.28
18573807--18573848	17	2.4	17	88	4	57	50	0	26	23	1.50
18575989--18576053	30	2.2	30	91	0	103	23	6	13	56	1.59
18577425--18577548	46	2.7	47	81	5	144	43	17	13	25	1.86
18577425--18577538	47	2.4	47	83	2	140	43	18	13	24	1.85
18578654--18578688	14	2.5	14	90	0	61	48	5	0	45	1.26
18579465--18579665	30	6.7	30	70	9	117	38	24	3	33	1.74
18579465--18579662	89	2.2	89	78	5	220	38	24	4	33	1.74
18579903--18579953	22	2.2	24	80	16	63	27	11	0	60	1.31
18579911--18579953	23	2.0	23	86	9	63	23	13	0	62	1.31
18582413--18582635	26	8.8	26	77	8	201	30	25	13	30	1.94
18585628--18585671	14	2.8	16	80	16	56	52	0	0	47	1.00
18594869--18594893	10	2.5	10	100	0	50	32	24	8	36	1.84
18594881--18595224	172	2.0	172	97	2	647	28	19	14	37	1.91
18596558--18596600	21	2.0	21	82	8	52	44	9	9	37	1.69
18597197--18597236	13	3.0	13	85	3	53	52	10	2	35	1.48
18597197--18597231	13	2.6	14	90	4	54	48	11	2	37	1.54
18597386--18597425	21	1.9	21	85	10	55	30	5	15	50	1.65
18597456--18597494	16	2.5	15	87	8	51	48	0	10	41	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18599325--18599370	21	2.2	20	84	3	56	56	6	2	34	1.37
18599312--18599421	45	2.5	45	77	16	115	57	5	2	34	1.36
18601867--18601942	31	2.5	31	86	4	109	30	13	9	47	1.73
18601821--18601993	90	1.9	90	83	6	226	23	12	12	51	1.73
18601897--18602008	59	1.9	59	85	3	154	23	13	12	50	1.75
18602151--18602339	60	3.2	57	78	8	191	50	11	12	25	1.73
18603138--18603210	17	4.1	17	70	16	58	43	20	4	31	1.70
18603153--18603240	37	2.4	37	84	0	104	44	20	5	29	1.74
18604732--18604800	33	2.1	32	86	7	95	37	2	18	40	1.66
18605637--18605685	18	2.7	19	75	6	57	30	16	24	28	1.96
18609009--18609042	15	2.3	15	89	0	50	58	5	17	17	1.57
18610088--18610438	175	2.0	175	98	0	684	33	19	14	31	1.92
18611408--18611444	13	3.0	13	80	15	51	0	29	0	70	0.88
18618776--18620115	23	58.3	23	86	1	1623	46	13	5	34	1.66
18622338--18622363	6	4.3	6	100	0	52	69	0	15	15	1.20
18626535--18626569	13	2.7	13	86	0	52	48	0	31	20	1.50
18627830--18627866	10	3.8	10	85	7	58	37	0	8	54	1.30
18629189--18629266	36	2.1	37	86	6	106	37	0	8	53	1.32
18629326--18629369	14	3.0	14	81	12	52	59	2	0	38	1.10
18631251--18631404	58	2.6	58	81	9	179	32	18	14	33	1.92
18631405--18631658	60	4.2	60	77	6	203	28	19	15	36	1.92
18631472--18631606	61	2.2	60	86	2	180	28	23	14	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18632468--18632522	17	3.5	17	71	19	64	60	3	12	23	1.49
18632460--18632565	30	3.5	30	89	1	122	62	3	7	26	1.39
18634670--18634714	18	2.5	19	85	10	67	22	0	17	60	1.37
18637560--18637602	21	2.0	21	86	0	59	41	2	16	39	1.61
18637802--18638073	36	7.6	36	81	1	258	23	16	25	34	1.95
18637802--18638051	108	2.3	108	89	0	383	23	15	26	34	1.95
18639448--18639571	44	2.8	44	81	4	133	36	16	9	37	1.82
18639779--18640028	41	6.1	40	91	3	376	30	22	31	16	1.95
18639783--18640281	123	4.0	124	82	9	582	30	22	29	17	1.96
18640014--18640039	13	2.0	13	100	0	52	38	15	30	15	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120